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MG214783.2ATS92100.1HMSP1_55__00054

Bact-Vir

MG214783.2__ATS92100.1__HMSP1_55__00054

Identity

Accession:: MG214783 ↗
Kingdom:: phage

Quality

75.8 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Sinorhizobium_phage_HMSP1-Susan

TaxID: 2049306

Cluster

View cluster (2 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 9-56

PDB

Domain cluster: representative

CATH (10)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2da7A00	1.10.10.60	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like	0.81	54.0	4.67e-01	70.8%	46.5%
1eyvB00	1.10.940.10	Mainly Alpha › Orthogonal Bundle › N-utilizing Substance Protein B Homolog; Chain A › NusB-like	0.80	54.0	3.87e-01	72.9%	25.6%
3veaA02	1.10.1220.10	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant › Met repressor-like	0.76	51.0	5.06e-01	70.8%	65.4%
3rd8A03	1.10.40.30	Mainly Alpha › Orthogonal Bundle › Ribonucleotide Reductase Protein R1; domain 1 › Fumarase/aspartase (C-terminal domain)	0.76	46.0	4.40e-01	72.9%	53.7%
4hv0C00	1.10.1220.10	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant › Met repressor-like	0.74	62.0	4.91e-01	89.6%	75.3%
1qo0D02	1.10.10.10	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain	0.68	47.0	4.82e-01	72.9%	76.1%
4tv7D01	1.10.10.10	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain	0.62	50.0	4.18e-01	89.6%	84.7%
1ou0A00	3.40.50.10230	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Cobalamin biosynthesis CobH/CbiC, precorrin-8X methylmutase	0.58	45.0	3.13e-01	93.8%	55.8%
7d1tA01	1.20.85.10	Mainly Alpha › Up-down Bundle › Photosynthetic Reaction Center, subunit M; domain 1 › Photosystem II protein D1-like	0.57	41.0	2.80e-01	77.1%	83.5%
7ymiD01	1.20.85.10	Mainly Alpha › Up-down Bundle › Photosynthetic Reaction Center, subunit M; domain 1 › Photosystem II protein D1-like	0.55	40.0	2.72e-01	77.1%	58.3%

ECOD (26)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3953501	101.1.11.0 ↗	alpha arrays › HTH › HTH › Ribbon-helix-helix	0.92	62.0	5.38e-01	72.9%	48.6%
2081534	101.1.11.2 ↗	alpha arrays › HTH › HTH › Ribbon-helix-helix › RHH_1	0.90	61.0	5.22e-01	75.0%	48.6%
3844546	101.1.1.1 ↗	alpha arrays › HTH › HTH › Three-helical HTH › Homeodomain	0.89	59.0	5.10e-01	70.8%	47.1%
3286839	101.1.11.0 ↗	alpha arrays › HTH › HTH › Ribbon-helix-helix	0.89	62.0	5.35e-01	75.0%	50.0%
2771700	101.1.11.11 ↗	alpha arrays › HTH › HTH › Ribbon-helix-helix › DUF1778	0.88	60.0	4.80e-01	70.8%	40.2%
3952811	101.1.11.0 ↗	alpha arrays › HTH › HTH › Ribbon-helix-helix	0.88	58.0	5.07e-01	70.8%	47.1%
3303566	101.1.11.0 ↗	alpha arrays › HTH › HTH › Ribbon-helix-helix	0.88	60.0	6.82e-01	70.8%	100.0%
3284512	101.1.11.30 ↗	alpha arrays › HTH › HTH › Ribbon-helix-helix › FitA-like_RHH	0.87	59.0	5.16e-01	70.8%	48.6%
5011906	101.1.11.0 ↗	alpha arrays › HTH › HTH › Ribbon-helix-helix	0.87	59.0	5.65e-01	77.1%	61.8%
2625223	101.1.11.0 ↗	alpha arrays › HTH › HTH › Ribbon-helix-helix	0.85	65.0	6.23e-01	89.6%	70.9%
4946063	101.1.11.0 ↗	alpha arrays › HTH › HTH › Ribbon-helix-helix	0.85	59.0	5.61e-01	75.0%	63.6%
3286659	101.1.3.1 ↗	alpha arrays › HTH › HTH › tetra-helical, LuxR-like › GerE	0.84	55.0	4.82e-01	72.9%	47.1%
2455631	101.1.11.11 ↗	alpha arrays › HTH › HTH › Ribbon-helix-helix › DUF1778	0.83	56.0	4.63e-01	70.8%	42.2%
3215991	101.1.1.0 ↗	alpha arrays › HTH › HTH › Three-helical HTH	0.83	55.0	4.91e-01	70.8%	50.8%
3406012	101.1.11.0 ↗	alpha arrays › HTH › HTH › Ribbon-helix-helix	0.83	56.0	5.19e-01	70.8%	58.3%
3726114	101.1.11.0 ↗	alpha arrays › HTH › HTH › Ribbon-helix-helix	0.82	62.0	5.30e-01	81.2%	56.0%
4937892	101.1.3.32 ↗	alpha arrays › HTH › HTH › tetra-helical, LuxR-like › RHH_1	0.79	65.0	4.95e-01	87.5%	52.0%
4375217	101.1.11.0 ↗	alpha arrays › HTH › HTH › Ribbon-helix-helix	0.78	61.0	4.95e-01	85.4%	48.8%
3586991	101.1.11.0 ↗	alpha arrays › HTH › HTH › Ribbon-helix-helix	0.78	58.0	4.97e-01	79.2%	52.0%
3652032	101.1.1.0 ↗	alpha arrays › HTH › HTH › Three-helical HTH	0.72	58.0	5.04e-01	89.6%	68.0%
3399413	243.7.1.0 ↗	a+b two layers › Cystatin-like › Cytochrome b5-like heme/steroid binding domain › Cytochrome b5-like heme/steroid binding domain	0.68	49.0	3.99e-01	87.5%	41.1%
3604737	101.1.12.0 ↗	alpha arrays › HTH › HTH › HTH motif inserted in other structures	0.65	35.0	3.86e-01	87.5%	64.1%
3593566	101.1.11.145 ↗	alpha arrays › HTH › HTH › Ribbon-helix-helix › F-box	0.62	52.0	4.73e-01	93.8%	69.2%
3298596	5050.1.1.33 ↗	alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_5	0.62	41.0	3.16e-01	75.0%	27.2%
4056200	3236.1.1.1 ↗	alpha complex topology › Cation-proton antiporter › Cation-proton antiporter (CPA) › Cation-proton antiporter (CPA) › Na_H_Exchanger	0.58	46.0	2.78e-01	91.7%	12.3%
5067754	148.1.3.0 ↗	alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain	0.58	39.0	3.77e-01	70.8%	100.0%

D2 high residues 67-105

PDB

Domain cluster: representative

CATH (3)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3oouA01	1.10.10.60	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like	0.74	57.0	5.10e-01	84.6%	67.3%
6xiuA01	1.10.10.60	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like	0.66	49.0	3.76e-01	84.6%	37.6%
8b3yA01	3.20.20.80	Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases	0.51	37.0	2.20e-01	84.6%	9.5%

ECOD (1)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3204020	103.1.1.1 ↗	alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › UBA	0.69	50.0	4.77e-01	100.0%	66.7%