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MG214783.2__ATS92168.1__HMSP1_30__00029
Bact-VirMG214783.2__ATS92168.1__HMSP1_30__00029
Identity
- Accession:
- MG214783 ↗
- Kingdom:
- phage
Quality
87.6
mean pLDDT
Taxonomy
TaxID: 2049306
Cluster
View cluster (116 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 23-90
Domain cluster:
rep: OP172633.1__WAX05116.1__AB434P2_00043__00038__D17-94
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF22758.3 best | Phage_cement | 37.3 | 3.90e-09 | 100.0% | 47.3% |
CATH (24)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1c5eA00 | 2.40.300.10 | Mainly Beta › Beta Barrel › Virus Head Decoration Protein; Chain: A, › Head decoration protein D | 0.77 | 63.0 | 5.65e-01 | 100.0% | 64.2% |
| 3gqhA01 | 2.40.300.10 | Mainly Beta › Beta Barrel › Virus Head Decoration Protein; Chain: A, › Head decoration protein D | 0.66 | 60.0 | 4.82e-01 | 98.5% | 56.9% |
| 1v5vA03 | 2.40.30.110 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Aminomethyltransferase beta-barrel domains | 0.65 | 45.0 | 4.41e-01 | 100.0% | 66.7% |
| 1wu2A04 | 2.40.340.10 | Mainly Beta › Beta Barrel › Beta-clip › MoeA, C-terminal, domain IV | 0.65 | 58.0 | 5.55e-01 | 100.0% | 94.8% |
| 1wosA04 | 2.40.30.110 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Aminomethyltransferase beta-barrel domains | 0.61 | 43.0 | 4.01e-01 | 100.0% | 59.3% |
| 3girA04 | 2.40.30.110 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Aminomethyltransferase beta-barrel domains | 0.58 | 41.0 | 3.95e-01 | 100.0% | 65.4% |
| 1vloA04 | 2.40.30.110 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Aminomethyltransferase beta-barrel domains | 0.58 | 43.0 | 3.91e-01 | 100.0% | 59.3% |
| 2rceA02 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.58 | 44.0 | 3.77e-01 | 100.0% | 51.9% |
| 3htrA00 | 2.30.30.240 | Mainly Beta › Roll › SH3 type barrels. › PRC-barrel domain | 0.58 | 35.0 | 3.12e-01 | 80.9% | 42.9% |
| 6tdyD01 | 2.40.10.170 | Mainly Beta › Beta Barrel › Thrombin, subunit H › | 0.57 | 39.0 | 3.79e-01 | 97.1% | 64.0% |
| 3p26A03 | 2.40.30.10 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors | 0.56 | 48.0 | 4.17e-01 | 98.5% | 63.6% |
| 1f60A03 | 2.40.30.10 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors | 0.56 | 49.0 | 4.20e-01 | 98.5% | 65.7% |
| 4indA01 | 2.60.120.1320 | Mainly Beta › Sandwich › Jelly Rolls › | 0.54 | 33.0 | 2.60e-01 | 100.0% | 28.8% |
| 1v9kA00 | 3.30.2350.10 | Alpha Beta › 2-Layer Sandwich › Pseudouridine synthase › Pseudouridine synthase | 0.54 | 41.0 | 2.88e-01 | 98.5% | 25.1% |
| 1zunB03 | 2.40.30.10 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors | 0.53 | 46.0 | 4.00e-01 | 100.0% | 63.2% |
| 2eaqA00 | 2.30.42.10 | Mainly Beta › Roll › Pdz3 Domain › PDZ domain | 0.53 | 45.0 | 4.17e-01 | 100.0% | 98.9% |
| 2dmzA01 | 2.30.42.10 | Mainly Beta › Roll › Pdz3 Domain › PDZ domain | 0.52 | 44.0 | 4.05e-01 | 100.0% | 98.9% |
| 3zzoA00 | 3.30.70.2800 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.52 | 29.0 | 2.68e-01 | 100.0% | 35.5% |
| 1vx4404 | 2.40.30.10 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors | 0.52 | 45.0 | 3.61e-01 | 100.0% | 49.3% |
| 4wksC02 | 2.30.120.10 | Mainly Beta › Roll › Penicillin G acylase, beta-roll domain › Aminohydrolase, N-terminal nucleophile (Ntn) domain, beta-sheet knob region | 0.51 | 44.0 | 4.28e-01 | 98.5% | 100.0% |
| 2pmzB07 | 2.40.50.150 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II, Rpb2 subunit, wall domain | 0.51 | 44.0 | 3.70e-01 | 100.0% | 85.5% |
| 4oq8A00 | 2.60.120.220 | Mainly Beta › Sandwich › Jelly Rolls › Satellite virus coat domain | 0.51 | 42.0 | 3.40e-01 | 97.1% | 88.9% |
| 1a8dA02 | 2.80.10.50 | Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › | 0.50 | 40.0 | 2.91e-01 | 89.7% | 45.6% |
| 3lkyA00 | 2.100.10.30 | Mainly Beta › Aligned Prism › Vitelline Membrane Outer Layer Protein I, subunit A › Jacalin-like lectin domain | 0.50 | 42.0 | 3.59e-01 | 100.0% | 98.4% |
ECOD (25)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2559744 | 70.4.1.2 ↗ | beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) › Phage_head_fibr | 0.86 | 64.0 | 6.82e-01 | 97.1% | 89.8% |
| 5002644 | 70.4.1.0 ↗ | beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) | 0.84 | 76.0 | 7.30e-01 | 95.6% | 96.0% |
| 3981037 | 70.4.1.9 ↗ | beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) › Phage_cement_2 | 0.80 | 61.0 | 6.64e-01 | 95.6% | 100.0% |
| 5083816 | 70.4.1.0 ↗ | beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) | 0.79 | 73.0 | 7.25e-01 | 98.5% | 95.7% |
| 2640772 | 70.4.1.1 ↗ | beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) › HDPD | 0.79 | 69.0 | 5.95e-01 | 100.0% | 63.0% |
| 5002645 | 70.4.1.0 ↗ | beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) | 0.78 | 62.0 | 6.57e-01 | 95.6% | 98.3% |
| 5016125 | 70.4.1.0 ↗ | beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) | 0.77 | 59.0 | 6.41e-01 | 97.1% | 100.0% |
| 2808420 | 70.4.1.1 ↗ | beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) › HDPD | 0.75 | 61.0 | 5.23e-01 | 100.0% | 56.0% |
| 5022524 | 70.4.1.0 ↗ | beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) | 0.75 | 60.0 | 6.01e-01 | 100.0% | 84.3% |
| 4988093 | 70.4.1.0 ↗ | beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) | 0.73 | 66.0 | 5.64e-01 | 97.1% | 68.3% |
| 2526359 | 70.4.1.2 ↗ | beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) › Phage_head_fibr | 0.72 | 56.0 | 5.85e-01 | 100.0% | 96.7% |
| 5083172 | 70.4.1.9 ↗ | beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) › Phage_cement_2 | 0.71 | 52.0 | 5.69e-01 | 88.2% | 100.0% |
| 5033307 | 70.4.1.0 ↗ | beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) | 0.71 | 64.0 | 5.00e-01 | 100.0% | 96.4% |
| 5083817 | 70.4.1.0 ↗ | beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) | 0.69 | 59.0 | 6.09e-01 | 94.1% | 100.0% |
| 3513462 | 70.4.1.8 ↗ | beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) › Phage_cement | 0.68 | 55.0 | 5.78e-01 | 98.5% | 100.0% |
| 364260 | 70.4.1.3 ↗ | beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) › Peptidase_G2 | 0.66 | 60.0 | 4.41e-01 | 98.5% | 67.5% |
| 5070918 | 1.1.7.34 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › GTP_EFTU_D4 | 0.64 | 49.0 | 4.12e-01 | 98.5% | 47.5% |
| 4025330 | 1.1.8.3 ↗ | beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › GCV_T_C | 0.60 | 45.0 | 4.18e-01 | 100.0% | 63.5% |
| 4023228 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.59 | 52.0 | 4.08e-01 | 97.1% | 47.9% |
| 159 | 1.1.8.3 ↗ | beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › GCV_T_C | 0.58 | 43.0 | 3.93e-01 | 100.0% | 60.0% |
| 4308556 | 1.1.7.50 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › EF-G_D2 | 0.57 | 46.0 | 4.07e-01 | 100.0% | 60.0% |
| 4288082 | 1.1.8.11 ↗ | beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › GTP-eEF1A_C | 0.55 | 47.0 | 4.38e-01 | 98.5% | 78.9% |
| 5021743 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.54 | 44.0 | 3.93e-01 | 100.0% | 61.9% |
| 3998076 | 7.1.1.1 ↗ | beta barrels › PDZ domain › PDZ domain › PDZ domain › PDZ | 0.52 | 45.0 | 4.09e-01 | 100.0% | 90.5% |
| 4025090 | 304.102.1.1 ↗ | a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › PseudoU_synth_2 | 0.52 | 40.0 | 2.68e-01 | 98.5% | 19.8% |
D2
high
residues 92-146
Domain cluster:
rep: OM681334.1__UNJ22046.1__X__00006__D51-106
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF22758.3 best | Phage_cement | 32.2 | 1.50e-07 | 100.0% | 36.3% |
CATH (8)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 6xgqb01 | 2.40.300.10 | Mainly Beta › Beta Barrel › Virus Head Decoration Protein; Chain: A, › Head decoration protein D | 0.82 | 74.0 | 6.17e-01 | 100.0% | 63.4% |
| 1c5eA00 | 2.40.300.10 | Mainly Beta › Beta Barrel › Virus Head Decoration Protein; Chain: A, › Head decoration protein D | 0.77 | 69.0 | 5.72e-01 | 100.0% | 60.0% |
| 1g8lA04 | 2.40.340.10 | Mainly Beta › Beta Barrel › Beta-clip › MoeA, C-terminal, domain IV | 0.67 | 57.0 | 5.24e-01 | 98.2% | 98.6% |
| 8bveA03 | 2.40.340.10 | Mainly Beta › Beta Barrel › Beta-clip › MoeA, C-terminal, domain IV | 0.66 | 58.0 | 5.36e-01 | 100.0% | 100.0% |
| 2npiA03 | 2.40.30.330 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Pre-mRNA cleavage complex subunit Clp1, C-terminal domain | 0.55 | 49.0 | 3.98e-01 | 100.0% | 78.6% |
| 2gfaB01 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.51 | 36.0 | 3.49e-01 | 89.1% | 66.1% |
| 3va7A07 | 2.40.50.100 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain | 0.51 | 43.0 | 3.93e-01 | 98.2% | 92.1% |
| 1z6hA00 | 2.40.50.100 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain | 0.50 | 41.0 | 3.86e-01 | 98.2% | 95.8% |
ECOD (20)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2559744 | 70.4.1.2 ↗ | beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) › Phage_head_fibr | 0.83 | 71.0 | 6.92e-01 | 100.0% | 86.4% |
| 2640772 | 70.4.1.1 ↗ | beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) › HDPD | 0.82 | 74.0 | 5.99e-01 | 100.0% | 59.0% |
| 3945811 | 70.4.1.7 ↗ | beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) › XM1_gp53_minor_capsid | 0.80 | 70.0 | 6.81e-01 | 98.2% | 95.0% |
| 5083817 | 70.4.1.0 ↗ | beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) | 0.79 | 69.0 | 6.54e-01 | 98.2% | 98.5% |
| 3513462 | 70.4.1.8 ↗ | beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) › Phage_cement | 0.78 | 69.0 | 6.78e-01 | 100.0% | 95.0% |
| 5083816 | 70.4.1.0 ↗ | beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) | 0.77 | 70.0 | 6.45e-01 | 100.0% | 91.4% |
| 5022524 | 70.4.1.0 ↗ | beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) | 0.76 | 66.0 | 6.08e-01 | 100.0% | 75.7% |
| 5016125 | 70.4.1.0 ↗ | beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) | 0.75 | 65.0 | 6.58e-01 | 100.0% | 96.4% |
| 5039270 | 70.4.1.0 ↗ | beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) | 0.74 | 62.0 | 6.27e-01 | 98.2% | 92.7% |
| 2808420 | 70.4.1.1 ↗ | beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) › HDPD | 0.74 | 65.0 | 5.22e-01 | 100.0% | 52.3% |
| 5002644 | 70.4.1.0 ↗ | beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) | 0.74 | 66.0 | 5.96e-01 | 100.0% | 94.7% |
| 5083172 | 70.4.1.9 ↗ | beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) › Phage_cement_2 | 0.72 | 59.0 | 6.07e-01 | 92.7% | 100.0% |
| 3602933 | 70.4.1.0 ↗ | beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) | 0.71 | 64.0 | 6.08e-01 | 100.0% | 92.3% |
| 2526359 | 70.4.1.2 ↗ | beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) › Phage_head_fibr | 0.68 | 59.0 | 5.81e-01 | 100.0% | 95.0% |
| 2984229 | 70.1.1.1 ↗ | beta barrels › beta-clip › MoeA C-terminal domain-like › MoeA C-terminal domain-like › MoeA_C | 0.66 | 58.0 | 5.20e-01 | 100.0% | 91.0% |
| 3205316 | 70.1.1.1 ↗ | beta barrels › beta-clip › MoeA C-terminal domain-like › MoeA C-terminal domain-like › MoeA_C | 0.66 | 58.0 | 4.92e-01 | 100.0% | 92.2% |
| 3516152 | 70.1.1.1 ↗ | beta barrels › beta-clip › MoeA C-terminal domain-like › MoeA C-terminal domain-like › MoeA_C | 0.65 | 57.0 | 4.96e-01 | 100.0% | 91.8% |
| 3398750 | 70.1.1.1 ↗ | beta barrels › beta-clip › MoeA C-terminal domain-like › MoeA C-terminal domain-like › MoeA_C | 0.55 | 44.0 | 4.10e-01 | 100.0% | 96.2% |
| 4389598 | 304.102.1.4 ↗ | a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › TruB_N | 0.52 | 41.0 | 2.87e-01 | 98.2% | 70.2% |
| 3402733 | 11.1.1.550 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Cadherin_3 | 0.50 | 36.0 | 2.94e-01 | 78.2% | 61.8% |