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MG250484.1__AUE22960.1__Cf1_00087__00087
Bact-VirMG250484.1__AUE22960.1__Cf1_00087__00087
Identity
- Accession:
- MG250484 ↗
- Kingdom:
- phage
Quality
75.5
mean pLDDT
Taxonomy
Heunggongvirae›
Uroviricota›
Caudoviricetes›
Pantevenvirales›
Straboviridae›
Moonvirus›
Citrobacter_phage_CF1_ERZ-2017
TaxID: 2267236
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 42-94
Domain cluster:
rep: OX241576.1__CAH9016554.1__VP193E371_P0053__00053__DFULL
CATH (59)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3po3S02 | 2.20.25.10 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › | 0.78 | 54.0 | 4.81e-01 | 73.6% | 59.5% |
| 1twfI02 | 2.20.25.10 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › | 0.72 | 54.0 | 4.71e-01 | 79.2% | 59.2% |
| 4c26A00 | 3.30.920.30 | Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Hypothetical protein. | 0.71 | 44.0 | 4.11e-01 | 71.7% | 50.0% |
| 3iwaA01 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.71 | 52.0 | 3.61e-01 | 77.4% | 40.8% |
| 2qkdA01 | 2.20.25.420 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › ZPR1, zinc finger domain | 0.71 | 49.0 | 5.17e-01 | 73.6% | 93.8% |
| 3cgbA01 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.70 | 51.0 | 3.52e-01 | 77.4% | 44.6% |
| 5i4eA01 | 2.30.30.360 | Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal | 0.70 | 47.0 | 4.96e-01 | 73.6% | 80.4% |
| 2xkoC01 | 2.30.30.660 | Mainly Beta › Roll › SH3 type barrels. › Protein of unknown function (DUF3539) | 0.69 | 45.0 | 4.70e-01 | 73.6% | 75.0% |
| 4fw1A02 | 2.30.30.10 | Mainly Beta › Roll › SH3 type barrels. › Integrase, C-terminal domain superfamily, retroviral | 0.68 | 47.0 | 4.69e-01 | 73.6% | 70.4% |
| 1twfI01 | 2.20.25.10 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › | 0.68 | 47.0 | 4.96e-01 | 77.4% | 84.8% |
| 1iz6A01 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.67 | 48.0 | 4.42e-01 | 77.4% | 76.8% |
| 6bogA01 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.66 | 50.0 | 5.05e-01 | 83.0% | 82.7% |
| 7cfdA01 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.66 | 48.0 | 4.39e-01 | 79.2% | 61.6% |
| 3cpfA01 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.66 | 47.0 | 4.45e-01 | 77.4% | 75.4% |
| 4m4zA01 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.65 | 46.0 | 4.81e-01 | 73.6% | 87.2% |
| 3kxtA00 | 2.30.30.610 | Mainly Beta › Roll › SH3 type barrels. › Chromatin protein Cren7 | 0.65 | 48.0 | 4.74e-01 | 81.1% | 87.5% |
| 3f8dA02 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.65 | 55.0 | 4.19e-01 | 94.3% | 86.2% |
| 3m2oA01 | 3.30.720.120 | Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › | 0.64 | 44.0 | 4.48e-01 | 77.4% | 73.6% |
| 3rm5B01 | 3.40.1190.20 | Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase | 0.64 | 43.0 | 2.68e-01 | 100.0% | 12.5% |
| 2zbwA02 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.64 | 54.0 | 4.11e-01 | 94.3% | 87.8% |
| 1b7tA02 | 2.30.30.360 | Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal | 0.64 | 45.0 | 4.60e-01 | 79.2% | 76.9% |
| 3dghA02 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.63 | 53.0 | 4.03e-01 | 92.5% | 87.0% |
| 3goxA01 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.63 | 47.0 | 4.81e-01 | 81.1% | 86.3% |
| 2cudA00 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.63 | 46.0 | 4.06e-01 | 79.2% | 62.0% |
| 1lckA01 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.62 | 43.0 | 4.22e-01 | 73.6% | 79.7% |
| 2e3nA00 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.62 | 52.0 | 3.48e-01 | 100.0% | 81.4% |
| 1mhnA00 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.62 | 47.0 | 4.64e-01 | 84.9% | 81.4% |
| 4c5eC02 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.62 | 49.0 | 4.07e-01 | 88.7% | 50.0% |
| 6l6jA02 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.62 | 52.0 | 3.87e-01 | 94.3% | 79.4% |
| 3lzwA02 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.61 | 51.0 | 3.97e-01 | 94.3% | 87.4% |
| 1uebA01 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.61 | 47.0 | 4.49e-01 | 84.9% | 79.4% |
| 3k30A03 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.61 | 51.0 | 3.83e-01 | 94.3% | 92.5% |
| 1fl2A02 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.61 | 52.0 | 3.96e-01 | 96.2% | 83.1% |
| 5ic7A00 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.60 | 49.0 | 3.12e-01 | 100.0% | 48.2% |
| 1xipA00 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.60 | 51.0 | 3.12e-01 | 100.0% | 29.4% |
| 4huzA02 | 3.10.180.10 | Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 | 0.59 | 42.0 | 3.08e-01 | 77.4% | 27.8% |
| 4tm3A00 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.59 | 50.0 | 2.98e-01 | 96.2% | 38.9% |
| 1zuuA00 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.58 | 40.0 | 4.00e-01 | 73.6% | 87.5% |
| 2pn2A00 | 3.30.300.20 | Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › K homology (KH) domain | 0.58 | 49.0 | 3.76e-01 | 100.0% | 51.1% |
| 5wbyC01 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.58 | 49.0 | 3.10e-01 | 100.0% | 47.0% |
| 3eucA01 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.58 | 49.0 | 3.65e-01 | 96.2% | 58.4% |
| 1nj1A02 | 3.40.50.800 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Anticodon-binding domain | 0.58 | 48.0 | 3.93e-01 | 96.2% | 70.2% |
| 8hmcA01 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.58 | 49.0 | 3.09e-01 | 100.0% | 45.3% |
| 3ossC00 | 2.30.30.830 | Mainly Beta › Roll › SH3 type barrels. › | 0.56 | 46.0 | 4.35e-01 | 90.6% | 80.0% |
| 5agvA01 | 3.10.150.10 | Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 | 0.56 | 44.0 | 3.48e-01 | 90.6% | 88.7% |
| 5w7zA01 | 3.10.150.10 | Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 | 0.56 | 42.0 | 3.37e-01 | 83.0% | 50.4% |
| 5ff5A01 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.55 | 48.0 | 3.11e-01 | 100.0% | 85.1% |
| 5cw7B00 | 3.30.2310.20 | Alpha Beta › 2-Layer Sandwich › YaeB-like fold › RelE-like | 0.55 | 43.0 | 3.58e-01 | 84.9% | 52.1% |
| 1sjiA03 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.54 | 46.0 | 3.50e-01 | 94.3% | 73.4% |
| 7u32F02 | 2.30.30.10 | Mainly Beta › Roll › SH3 type barrels. › Integrase, C-terminal domain superfamily, retroviral | 0.54 | 40.0 | 4.05e-01 | 81.1% | 86.3% |
| 1wq8A00 | 2.10.90.10 | Mainly Beta › Ribbon › Cystine Knot Cytokines, subunit B › Cystine-knot cytokines | 0.54 | 47.0 | 3.86e-01 | 100.0% | 71.7% |
| 2kr0A01 | 2.30.29.70 | Mainly Beta › Roll › PH-domain like › Proteasomal ubiquitin receptor Rpn13/ADRM1 | 0.54 | 38.0 | 3.07e-01 | 77.4% | 73.5% |
| 1f1sA03 | 2.60.220.10 | Mainly Beta › Sandwich › Chondroitinase Ac; Chain A, domain 3 › Polysaccharide lyase family 8-like, C-terminal | 0.54 | 45.0 | 4.02e-01 | 100.0% | 91.5% |
| 5agvA02 | 3.10.150.10 | Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 | 0.53 | 43.0 | 3.35e-01 | 96.2% | 93.9% |
| 3pweA01 | 3.10.150.10 | Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 | 0.53 | 43.0 | 3.34e-01 | 92.5% | 58.5% |
| 6ptrB01 | 3.10.150.10 | Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 | 0.53 | 39.0 | 3.24e-01 | 86.8% | 50.4% |
| 3qr8A02 | 6.20.150.10 | Special › Other non-globular › Chondroitinase Ac; Chain A, domain 3 › | 0.52 | 32.0 | 3.02e-01 | 77.4% | 45.2% |
| 4trtA01 | 3.10.150.10 | Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 | 0.51 | 41.0 | 3.21e-01 | 92.5% | 57.4% |
| 3rauA00 | 1.25.40.280 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › alix/aip1 like domains | 0.51 | 40.0 | 2.45e-01 | 86.8% | 22.9% |
ECOD (36)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4966194 | 375.1.1.130 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Zn_Tnp_IS1 | 0.80 | 55.0 | 5.89e-01 | 71.7% | 84.4% |
| 4934260 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.79 | 55.0 | 5.48e-01 | 71.7% | 70.4% |
| 5017134 | 208.1.1.1 ↗ | beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes › Hexapep | 0.79 | 53.0 | 3.52e-01 | 71.7% | 19.0% |
| None | — | 0.76 | 51.0 | 3.14e-01 | 71.7% | 12.1% | |
| 5065152 | 4333.1.1.0 ↗ | a+b complex topology › DNA methylase specificity domain › DNA methylase specificity domain › DNA methylase specificity domain | 0.76 | 45.0 | 2.74e-01 | 71.7% | 10.3% |
| 5001065 | 4333.1.1.0 ↗ | a+b complex topology › DNA methylase specificity domain › DNA methylase specificity domain › DNA methylase specificity domain | 0.76 | 45.0 | 2.73e-01 | 71.7% | 10.0% |
| 4932368 | 2005.1.1.17 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1f | 0.74 | 59.0 | 3.71e-01 | 86.8% | 22.6% |
| 4963650 | 4.1.1.488 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF7346 | 0.72 | 44.0 | 4.41e-01 | 73.6% | 60.0% |
| 3247046 | 377.1.1.83 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › PF26040 | 0.72 | 49.0 | 5.39e-01 | 71.7% | 95.0% |
| 4948719 | 101.1.2.28 ↗ | alpha arrays › HTH › HTH › winged helix domain › eIF-5_eIF-2B | 0.72 | 58.0 | 4.62e-01 | 86.8% | 79.0% |
| 3258369 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.70 | 47.0 | 5.29e-01 | 71.7% | 100.0% |
| 1114686 | 4.1.1.8 ↗ | beta barrels › SH3 › SH3 › SH3 › IN_DBD_C | 0.67 | 46.0 | 4.58e-01 | 73.6% | 67.9% |
| 5009210 | 4042.1.1.3 ↗ | a+b complex topology › barrel domain in beta subunit of DNA dependent RNA-polymerase › barrel domain in beta subunit of DNA dependent RNA-polymerase › barrel domain in beta subunit of DNA dependent RNA-polymerase › RNA_pol_Rpb2_5 | 0.67 | 57.0 | 4.03e-01 | 100.0% | 53.3% |
| 4675029 | 4042.1.1.2 ↗ | a+b complex topology › barrel domain in beta subunit of DNA dependent RNA-polymerase › barrel domain in beta subunit of DNA dependent RNA-polymerase › barrel domain in beta subunit of DNA dependent RNA-polymerase › RNA_pol_Rpb2_6,RNA_pol_Rpb2_5 | 0.67 | 57.0 | 4.03e-01 | 100.0% | 53.3% |
| 3616382 | 243.3.1.0 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin | 0.66 | 55.0 | 5.28e-01 | 90.6% | 80.0% |
| 3388463 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.64 | 47.0 | 3.51e-01 | 81.1% | 33.1% |
| 4816818 | 4.1.1.33 ↗ | beta barrels › SH3 › SH3 › SH3 › Myosin_N | 0.64 | 43.0 | 4.49e-01 | 73.6% | 78.7% |
| 3909317 | 4.1.1.1 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_1 | 0.64 | 44.0 | 4.59e-01 | 73.6% | 94.0% |
| 3406803 | 4.1.1.54 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_2 | 0.63 | 44.0 | 4.01e-01 | 73.6% | 67.1% |
| 3711659 | 5.1.4.218 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_IFT80_2nd | 0.63 | 55.0 | 3.46e-01 | 100.0% | 38.3% |
| 4890270 | 4.1.1.33 ↗ | beta barrels › SH3 › SH3 › SH3 › Myosin_N | 0.63 | 44.0 | 4.40e-01 | 73.6% | 72.2% |
| 3267329 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.63 | 50.0 | 3.88e-01 | 90.6% | 44.0% |
| 5050109 | 375.1.1.31 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Elf1 | 0.62 | 45.0 | 3.93e-01 | 79.2% | 64.7% |
| 3896519 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.62 | 46.0 | 4.77e-01 | 81.1% | 98.0% |
| 3974298 | 2003.1.2.0 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain | 0.61 | 49.0 | 3.79e-01 | 90.6% | 83.2% |
| 3216746 | 4.1.1.54 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_2 | 0.61 | 42.0 | 4.24e-01 | 73.6% | 85.5% |
| 3408327 | 4.1.1.9 ↗ | beta barrels › SH3 › SH3 › SH3 › TUDOR | 0.60 | 47.0 | 4.01e-01 | 86.8% | 51.1% |
| 3620094 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.60 | 44.0 | 4.40e-01 | 81.1% | 76.4% |
| 4010184 | 2003.1.2.1 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox | 0.60 | 50.0 | 3.81e-01 | 94.3% | 90.4% |
| 3469800 | 4.1.1.1 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_1 | 0.58 | 40.0 | 3.54e-01 | 73.6% | 58.7% |
| None | — | 0.55 | 42.0 | 2.35e-01 | 86.8% | 8.1% | |
| 3243842 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.54 | 47.0 | 3.68e-01 | 96.2% | 81.8% |
| 3896520 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.52 | 38.0 | 3.75e-01 | 86.8% | 75.0% |
| 4999847 | 4333.1.1.0 ↗ | a+b complex topology › DNA methylase specificity domain › DNA methylase specificity domain › DNA methylase specificity domain | 0.51 | 40.0 | 2.56e-01 | 88.7% | 37.7% |
| 4102438 | 227.1.1.3 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta | 0.51 | 41.0 | 3.23e-01 | 92.5% | 60.0% |
| 3420734 | 331.3.1.3 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like › START | 0.50 | 44.0 | 2.86e-01 | 100.0% | 59.1% |