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MG250486.1__AUE23424.1__Ro1_00219__00198

Bact-Vir

MG250486.1__AUE23424.1__Ro1_00219__00198

Identity

Accession:
MG250486 ↗
Kingdom:
phage

Quality

86.7 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Mydovirus› Raoultella_phage_Ro1

TaxID: 2053702

Cluster

View cluster (77 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 29-87_147-188_205-257
PDB
Domain cluster: representative
CATH (7)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4ccdA03 2.60.120.560 Mainly Beta › Sandwich › Jelly Rolls › Exo-inulinase; domain 1 0.65 52.0 4.72e-01 83.8% 96.5%
4bpzA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.64 51.0 4.33e-01 83.8% 96.0%
4azzA00 2.60.120.560 Mainly Beta › Sandwich › Jelly Rolls › Exo-inulinase; domain 1 0.64 49.0 4.86e-01 81.2% 99.4%
3zxkA02 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.61 48.0 4.26e-01 81.8% 98.1%
2waaA01 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.58 41.0 4.51e-01 83.8% 90.2%
4k7jA02 2.60.120.1360 Mainly Beta › Sandwich › Jelly Rolls › 0.57 43.0 4.77e-01 85.1% 97.6%
4dohB02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 29.0 3.53e-01 95.5% 92.0%
ECOD (11)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5012885 10.1.1.35 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_3 0.77 69.0 6.06e-01 94.2% 92.7%
3703874 10.1.1.56 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › TS_C 0.71 65.0 5.46e-01 98.1% 82.4%
4939145 10.1.1.64 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › DUF2341 0.67 56.0 5.06e-01 87.7% 86.3%
3832214 10.1.1.63 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Methyltransf_FA 0.63 43.0 4.25e-01 70.1% 97.6%
3246507 10.1.1.49 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Glyco_hydro_59_C 0.62 50.0 4.47e-01 84.4% 91.6%
4027070 10.1.1.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.59 50.0 4.56e-01 90.9% 94.6%
2503457 10.1.1.38 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › GH32_BT1760-like_C 0.59 43.0 4.22e-01 76.6% 91.2%
5003406 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.54 39.0 4.07e-01 87.0% 81.4%
4983953 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.53 42.0 4.17e-01 83.8% 95.2%
3260805 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.52 41.0 3.81e-01 83.1% 98.5%
3883323 10.1.1.17 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_2 0.52 47.0 4.39e-01 96.1% 97.8%
D2 medium residues 88-146_189-204
PDB
Domain cluster: representative
CATH (12)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4o4oA00 2.40.128.590 Mainly Beta › Beta Barrel › Lipocalin › CpcT/CpeT domain 0.56 40.0 3.06e-01 76.0% 96.4%
3qvnA02 3.55.40.20 Alpha Beta › 3-Layer(bab) Sandwich › minor pseudopilin epsh fold › Iron/manganese superoxide dismutase, C-terminal domain 0.54 42.0 3.64e-01 84.0% 91.5%
1uebA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.54 32.0 3.46e-01 73.3% 69.8%
2uvaG07 3.30.1120.100 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › 0.54 40.0 3.33e-01 80.0% 47.8%
1ltlA03 2.20.28.10 Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › 0.54 32.0 3.91e-01 84.0% 91.8%
4r7kA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.53 39.0 3.05e-01 78.7% 39.3%
6u5vB07 3.30.1120.100 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › 0.53 39.0 3.30e-01 78.7% 69.8%
2vbuA01 2.40.30.30 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Riboflavin kinase-like 0.53 44.0 3.69e-01 92.0% 83.1%
5fbhA02 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.52 44.0 3.38e-01 96.0% 96.8%
6v04A01 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.52 35.0 3.00e-01 81.3% 41.7%
2b5lB01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.51 40.0 2.68e-01 90.7% 88.5%
2xc8A00 2.60.40.2980 Mainly Beta › Sandwich › Immunoglobulin-like › 0.50 43.0 3.74e-01 98.7% 81.0%
ECOD (8)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4025985 3529.1.1.0 ↗ beta sandwiches › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain 0.61 30.0 3.95e-01 80.0% 87.5%
5059852 375.1.2.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Desulforedoxin 0.60 33.0 4.10e-01 88.0% 100.0%
3904288 9.13.1.7 ↗ beta barrels › Lipocalins/Streptavidin › AOC barrel-like › AOC barrel-like › Pep_M12B_propep 0.57 37.0 3.23e-01 76.0% 43.5%
4198892 1.1.7.14 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › CTP-dep_RFKase 0.56 47.0 3.90e-01 92.0% 84.6%
3394297 198.1.1.4 ↗ alpha arrays › Saposin-like › Saposin-like › Saposin-like › DUF3456 0.56 41.0 3.43e-01 78.7% 61.5%
129 1.1.7.14 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › CTP-dep_RFKase 0.53 44.0 3.69e-01 92.0% 82.4%
4952059 809.2.1.0 ↗ a+b two layers › BLIP-like › BT0923-like › BT0923-like 0.52 34.0 3.37e-01 73.3% 62.5%
3517402 243.3.1.0 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.52 35.0 3.15e-01 74.7% 48.2%