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MG251388.1__ATW62295.1__Psp6_00042__00042

Bact-Vir

MG251388.1__ATW62295.1__Psp6_00042__00042

Identity

Accession:
MG251388 ↗
Kingdom:
phage

Quality

84.9 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 8-60
PDB
Domain cluster: representative
CATH (46)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1df0A02 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.79 65.0 5.36e-01 100.0% 52.2%
2rajA02 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.72 55.0 4.16e-01 83.0% 67.5%
2lt1A00 2.40.10.170 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.70 60.0 5.43e-01 100.0% 76.0%
1txqA00 2.30.30.190 Mainly Beta › Roll › SH3 type barrels. › CAP Gly-rich-like domain 0.70 60.0 5.45e-01 100.0% 89.2%
2lqkA00 2.40.10.170 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.69 59.0 5.47e-01 100.0% 77.1%
4b6mB00 2.30.30.190 Mainly Beta › Roll › SH3 type barrels. › CAP Gly-rich-like domain 0.68 58.0 5.18e-01 100.0% 84.8%
2k2jA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.68 55.0 4.35e-01 94.3% 67.5%
1dz1A00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.66 51.0 4.74e-01 92.5% 65.7%
3oyyA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.65 56.0 5.26e-01 100.0% 83.3%
4jbmB01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.64 48.0 4.14e-01 88.7% 80.2%
1xteA00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.63 48.0 3.81e-01 84.9% 74.1%
6s8zA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.63 55.0 5.21e-01 100.0% 83.9%
1uebA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.62 54.0 5.14e-01 100.0% 82.5%
1asuA00 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.62 46.0 3.35e-01 83.0% 51.9%
1whqA01 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.61 48.0 4.41e-01 88.7% 81.7%
4iupA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.61 53.0 4.83e-01 100.0% 80.6%
2vbuA01 2.40.30.30 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Riboflavin kinase-like 0.60 47.0 3.57e-01 86.8% 40.8%
3pvlA04 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.60 53.0 4.32e-01 100.0% 73.7%
2kvoA01 2.40.30.220 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Photosystem II Psb28 0.59 47.0 3.91e-01 94.3% 94.2%
2ltrA00 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.59 47.0 3.77e-01 88.7% 52.4%
7oufB01 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.58 42.0 3.17e-01 81.1% 55.7%
4kcaA03 2.40.128.10 Mainly Beta › Beta Barrel › Lipocalin › 0.58 42.0 3.58e-01 83.0% 44.3%
3ro6C01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.58 42.0 3.48e-01 81.1% 51.9%
1khiA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.58 48.0 4.43e-01 100.0% 77.3%
2kqfA00 2.30.42.10 Mainly Beta › Roll › Pdz3 Domain › PDZ domain 0.58 46.0 3.88e-01 92.5% 78.1%
1iz6A01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.57 49.0 4.55e-01 100.0% 78.3%
3k6qA02 3.30.160.620 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.57 44.0 3.76e-01 84.9% 96.6%
4fvaC00 3.60.10.10 Alpha Beta › 4-Layer Sandwich › Deoxyribonuclease I; Chain A › Endonuclease/exonuclease/phosphatase 0.57 42.0 2.70e-01 79.2% 39.0%
2k75A01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.57 43.0 3.64e-01 90.6% 89.3%
3mj6A01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.57 42.0 3.37e-01 81.1% 81.2%
1krlA00 6.20.50.130 Special › Other non-globular › N-terminal domain of TfIIb › 0.56 36.0 3.86e-01 79.2% 79.5%
1lkeA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.55 44.0 3.35e-01 100.0% 62.4%
1t4lB00 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.54 43.0 3.65e-01 88.7% 68.9%
5fgoA00 3.10.450.700 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.54 45.0 4.33e-01 96.2% 82.3%
1qu6A02 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.54 41.0 3.80e-01 92.5% 75.0%
3lxrF00 1.10.4120.20 Mainly Alpha › Orthogonal Bundle › SopE-like GEF fold › 0.53 38.0 2.76e-01 81.1% 80.7%
6qm7A00 3.60.20.10 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain 0.53 43.0 2.84e-01 94.3% 83.2%
3cqyB01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.52 38.0 2.75e-01 83.0% 48.4%
1fr3A00 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.52 40.0 3.77e-01 86.8% 80.6%
1vw4502 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.52 38.0 3.36e-01 86.8% 65.2%
6u10A00 3.60.15.10 Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like 0.52 37.0 2.46e-01 77.4% 75.1%
1srqA01 3.30.1120.160 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › 0.51 40.0 3.21e-01 100.0% 47.8%
4e5xG00 2.60.40.3530 Mainly Beta › Sandwich › Immunoglobulin-like › 0.51 38.0 3.18e-01 83.0% 52.5%
2ebmA00 3.10.110.10 Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme 0.51 39.0 3.18e-01 96.2% 57.8%
1q7eA02 3.30.1540.10 Alpha Beta › 2-Layer Sandwich › formyl-coa transferase, domain 3 › formyl-coa transferase, domain 3 0.50 37.0 3.19e-01 84.9% 97.9%
3fbxA00 3.60.60.30 Alpha Beta › 4-Layer Sandwich › Penicillin V Acylase; Chain A › 0.50 40.0 2.41e-01 100.0% 41.2%
ECOD (63)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5017214 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.87 67.0 6.70e-01 100.0% 80.0%
3821751 4.1.1.32 beta barrels › SH3 › SH3 › SH3 › CarD_TRCF_RID 0.76 67.0 5.85e-01 100.0% 66.3%
4051081 4.1.1.32 beta barrels › SH3 › SH3 › SH3 › CarD_TRCF_RID 0.76 67.0 6.48e-01 100.0% 90.0%
4851967 4.1.1.32 beta barrels › SH3 › SH3 › SH3 › CarD_TRCF_RID 0.72 62.0 5.93e-01 100.0% 87.1%
5032977 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.72 63.0 5.52e-01 100.0% 76.2%
5014317 243.3.1.0 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.72 55.0 4.70e-01 83.0% 53.8%
3618716 4.8.1.2 beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Chromo_shadow 0.72 55.0 5.35e-01 86.8% 75.0%
1112010 4.1.1.32 beta barrels › SH3 › SH3 › SH3 › CarD_TRCF_RID 0.70 60.0 5.43e-01 100.0% 76.0%
3549474 4.1.1.406 beta barrels › SH3 › SH3 › SH3 › SH3-A_UBE2O 0.69 57.0 4.02e-01 100.0% 29.2%
3894798 4.1.1.243 beta barrels › SH3 › SH3 › SH3 › SH3_Myosin-XVIIIa 0.68 52.0 5.55e-01 92.5% 100.0%
5041400 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.67 48.0 5.11e-01 77.4% 100.0%
3733718 4292.2.1.0 a+b two layers › FlaG-like › MAGUK binding stalk (MBS) domain › MAGUK binding stalk (MBS) domain 0.65 56.0 4.86e-01 100.0% 67.1%
4946882 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.65 48.0 4.80e-01 81.1% 81.8%
3402542 4.8.1.2 beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Chromo_shadow 0.64 51.0 4.60e-01 92.5% 62.7%
3500542 4.1.1.9 beta barrels › SH3 › SH3 › SH3 › TUDOR 0.63 51.0 4.36e-01 100.0% 54.4%
3544618 4292.2.1.0 a+b two layers › FlaG-like › MAGUK binding stalk (MBS) domain › MAGUK binding stalk (MBS) domain 0.63 55.0 4.71e-01 100.0% 67.1%
4931409 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.63 51.0 3.89e-01 92.5% 76.9%
3586665 295.1.1.0 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.61 50.0 4.98e-01 98.1% 85.5%
5019817 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.61 46.0 3.82e-01 88.7% 71.8%
5009756 4972.1.1.1 beta barrels › barrel domain in CV3147-like proteins › barrel domain in CV3147-like proteins › barrel domain in CV3147-like proteins › DUF917_C 0.61 48.0 3.76e-01 90.6% 53.6%
3607520 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.61 52.0 4.03e-01 94.3% 82.6%
3701501 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.61 49.0 4.64e-01 90.6% 83.1%
4043415 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.61 47.0 2.81e-01 88.7% 12.6%
5001821 2.1.1.111 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ssb-like_OB 0.61 46.0 3.85e-01 88.7% 75.2%
3924385 1.1.15.0 beta barrels › cradle loop barrel › RIFT-related › PK beta-barrel domain-like 0.61 51.0 3.26e-01 100.0% 52.8%
5059673 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.60 46.0 3.84e-01 86.8% 46.0%
3515433 330.1.1.1 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.60 47.0 4.41e-01 86.8% 83.1%
3978756 3197.1.1.1 a+b two layers › N-terminal domain of effector protein PipB2 › N-terminal domain of effector protein PipB2 › N-terminal domain of effector protein PipB2 › PipB2_N 0.59 46.0 3.68e-01 90.6% 79.2%
4985567 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.59 47.0 3.96e-01 86.8% 82.1%
3364812 5.1.3.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.59 47.0 3.22e-01 100.0% 22.2%
4011393 6.1.1.0 beta duplicates or obligate multimers › beta-Trefoil › beta-Trefoil › beta-Trefoil 0.58 45.0 3.33e-01 92.5% 95.2%
3288253 1.1.13.55 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › DUF4873 0.58 47.0 4.08e-01 96.2% 95.6%
3510980 7525.1.1.2 a/b three-layered sandwiches › Phosphoglycerate mutase-like › Phosphoglycerate mutase-like › Phosphoglycerate mutase-like › His_Phos_2 0.58 44.0 2.81e-01 86.8% 21.0%
3394711 4026.1.1.1 a+b three layers › a+b domain in Rap/Ran-GAP (Pfam 02145) › a+b domain in Rap/Ran-GAP (Pfam 02145) › a+b domain in Rap/Ran-GAP (Pfam 02145) › Rap-GAP_dimer 0.58 45.0 3.29e-01 88.7% 62.5%
3768941 5.1.4.172 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_CAF1B_HIR1 0.58 44.0 2.52e-01 86.8% 14.6%
3922240 3755.3.1.321 alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › WHAMM-JMY_N 0.58 42.0 3.41e-01 81.1% 79.1%
3985617 295.1.1.0 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.58 49.0 4.56e-01 100.0% 75.7%
3503204 330.1.1.1 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.57 46.0 3.87e-01 90.6% 57.9%
3458138 375.1.1.131 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › DUF702 0.57 41.0 3.98e-01 83.0% 100.0%
3614906 4.26.1.8 beta barrels › SH3 › Chromatin protein Cren7 › Chromatin protein Cren7 › Saf4_Yju2 0.57 46.0 4.31e-01 96.2% 97.1%
4928794 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.57 42.0 4.38e-01 81.1% 100.0%
4416182 241.15.1.3 a+b two layers › Type III secretory system chaperone-like › FP (Fbxo7/PI31) dimerization domain › FP (Fbxo7/PI31) dimerization domain › SPC25 0.57 46.0 3.80e-01 94.3% 71.4%
3531867 4026.1.1.1 a+b three layers › a+b domain in Rap/Ran-GAP (Pfam 02145) › a+b domain in Rap/Ran-GAP (Pfam 02145) › a+b domain in Rap/Ran-GAP (Pfam 02145) › Rap-GAP_dimer 0.56 47.0 3.36e-01 100.0% 38.3%
3785991 241.15.1.3 a+b two layers › Type III secretory system chaperone-like › FP (Fbxo7/PI31) dimerization domain › FP (Fbxo7/PI31) dimerization domain › SPC25 0.56 47.0 3.84e-01 96.2% 72.1%
5033471 5084.1.1.0 beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like 0.56 47.0 3.86e-01 100.0% 97.1%
3987123 881.1.1.0 a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like 0.56 45.0 3.97e-01 98.1% 66.7%
3589823 295.1.1.0 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.56 47.0 4.47e-01 98.1% 81.5%
3837975 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.56 46.0 3.31e-01 100.0% 30.3%
3689627 206.1.1.1 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.56 48.0 2.92e-01 100.0% 28.5%
4558453 4.1.1.346 beta barrels › SH3 › SH3 › SH3 › FlgH 0.55 43.0 3.98e-01 96.2% 79.7%
4087511 2.1.1.15 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.55 43.0 3.55e-01 92.5% 84.5%
3496143 4026.1.1.0 a+b three layers › a+b domain in Rap/Ran-GAP (Pfam 02145) › a+b domain in Rap/Ran-GAP (Pfam 02145) › a+b domain in Rap/Ran-GAP (Pfam 02145) 0.55 47.0 3.52e-01 100.0% 50.3%
3423797 5.3.1.2 beta duplicates or obligate multimers › beta-propeller-like › beta-Prism II › beta-Prism II › B_lectin 0.55 46.0 3.42e-01 92.5% 92.6%
3284646 2003.1.5.151 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_23, Methyltransf_25 0.55 42.0 2.75e-01 84.9% 18.8%
3439915 5.1.3.118 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_3 0.55 48.0 2.99e-01 100.0% 35.6%
3645007 5.1.10.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 12-bladed 0.54 40.0 3.58e-01 86.8% 97.6%
4950045 7089.1.1.0 a+b two layers › Methane monooxygenase hydroxylase, MmoD › Methane monooxygenase hydroxylase, MmoD › Methane monooxygenase hydroxylase, MmoD 0.53 43.0 3.84e-01 98.1% 82.4%
3482073 295.1.1.0 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.52 43.0 4.25e-01 98.1% 88.3%
3760297 211.1.1.37 a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Teneurin_ABD 0.52 38.0 3.03e-01 81.1% 36.7%
2491389 5.1.3.19 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Hira 0.52 41.0 3.04e-01 100.0% 48.1%
4348096 3675.1.1.1 a+b complex topology › DNA gyrase subunit B insertion domain › DNA gyrase subunit B insertion domain › DNA gyrase subunit B insertion domain › GyrB_insert 0.52 42.0 3.04e-01 92.5% 37.0%
3225194 11.10.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › TRAF domain-like › TRAF domain-like 0.51 42.0 3.29e-01 98.1% 82.3%
3231216 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.50 38.0 3.95e-01 98.1% 96.0%