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MG387042.1__ATW62657.1__X__00136
Bact-VirMG387042.1__ATW62657.1__X__00136
Identity
- Accession:
- MG387042 ↗
- Kingdom:
- phage
Quality
84.6
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 15-57
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF21430.5 best | DTP-pb9_B-dom | 78.9 | 3.30e-22 | 100.0% | 50.6% |
CATH (24)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 6f2mA02 | 2.40.30.290 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › | 0.94 | 86.0 | 6.66e-01 | 100.0% | 49.4% |
| 3kewA01 | 2.40.30.130 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › | 0.74 | 56.0 | 4.51e-01 | 83.7% | 48.8% |
| 2f1lA01 | 2.40.30.60 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › RimM | 0.73 | 63.0 | 5.02e-01 | 100.0% | 53.9% |
| 2rf4E02 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.73 | 49.0 | 3.99e-01 | 72.1% | 100.0% |
| 2dyiA01 | 2.40.30.60 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › RimM | 0.72 | 61.0 | 4.96e-01 | 100.0% | 53.6% |
| 1y14D02 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.71 | 52.0 | 4.12e-01 | 76.7% | 97.7% |
| 2ynaA02 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.71 | 52.0 | 4.25e-01 | 83.7% | 44.3% |
| 4ac9C04 | 2.40.10.190 | Mainly Beta › Beta Barrel › Thrombin, subunit H › translation elongation factor selb, chain A, domain 4 | 0.69 | 52.0 | 4.46e-01 | 100.0% | 48.8% |
| 2cqoA01 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.69 | 47.0 | 3.70e-01 | 72.1% | 78.3% |
| 2qggA01 | 2.40.30.60 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › RimM | 0.69 | 57.0 | 4.56e-01 | 100.0% | 51.6% |
| 2zzeA03 | 2.40.30.130 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › | 0.68 | 53.0 | 4.25e-01 | 100.0% | 40.8% |
| 2zu2A01 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.68 | 50.0 | 3.88e-01 | 83.7% | 35.7% |
| 3wdhA01 | 2.60.40.2320 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.65 | 53.0 | 4.11e-01 | 90.7% | 54.2% |
| 2ra1A04 | 2.60.40.1220 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.65 | 55.0 | 4.36e-01 | 100.0% | 46.4% |
| 5j39A01 | 2.40.50.90 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.65 | 45.0 | 3.28e-01 | 74.4% | 84.1% |
| 3c12A01 | 2.30.30.910 | Mainly Beta › Roll › SH3 type barrels. › | 0.62 | 48.0 | 4.64e-01 | 100.0% | 74.5% |
| 1txqA00 | 2.30.30.190 | Mainly Beta › Roll › SH3 type barrels. › CAP Gly-rich-like domain | 0.61 | 51.0 | 4.37e-01 | 100.0% | 87.8% |
| 2f5kA01 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.60 | 51.0 | 4.95e-01 | 100.0% | 100.0% |
| 2apoA03 | 3.30.70.3190 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.58 | 45.0 | 3.80e-01 | 100.0% | 54.3% |
| 2l3rA02 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.57 | 47.0 | 4.07e-01 | 100.0% | 82.2% |
| 4j27A02 | 2.60.40.1180 | Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II | 0.55 | 40.0 | 3.37e-01 | 100.0% | 42.7% |
| 2e8yA01 | 2.60.40.2320 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.55 | 46.0 | 3.68e-01 | 100.0% | 45.5% |
| 4ympA00 | 2.60.40.1850 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.54 | 39.0 | 3.28e-01 | 100.0% | 90.2% |
| 3o0hB02 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.53 | 38.0 | 2.92e-01 | 81.4% | 65.8% |
ECOD (33)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3786245 | 1.1.8.5 ↗ | beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › tRNA_Me_trans_C | 0.80 | 69.0 | 5.58e-01 | 100.0% | 51.8% |
| 4381495 | 1.1.7.11 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM | 0.80 | 70.0 | 5.49e-01 | 100.0% | 53.3% |
| 4391995 | 1.1.7.11 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM | 0.79 | 69.0 | 5.49e-01 | 100.0% | 56.5% |
| 4138546 | 1.1.7.11 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM | 0.77 | 68.0 | 5.31e-01 | 100.0% | 53.3% |
| 4214180 | 1.1.7.11 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM | 0.76 | 66.0 | 5.15e-01 | 100.0% | 50.5% |
| 3719677 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.76 | 66.0 | 4.53e-01 | 100.0% | 35.5% |
| 4042679 | 1.1.7.11 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM | 0.76 | 66.0 | 5.29e-01 | 100.0% | 57.6% |
| 4194151 | 1.1.7.11 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM | 0.76 | 66.0 | 5.19e-01 | 100.0% | 55.6% |
| 4070992 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.75 | 66.0 | 4.88e-01 | 100.0% | 50.0% |
| 3966626 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.75 | 65.0 | 5.17e-01 | 100.0% | 53.3% |
| 3303056 | 1.1.7.19 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › GTP_EFTU_D2 | 0.75 | 65.0 | 5.58e-01 | 100.0% | 78.6% |
| 4205951 | 1.1.7.11 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM | 0.75 | 65.0 | 5.08e-01 | 100.0% | 52.6% |
| 4682440 | 1.1.7.11 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM | 0.75 | 65.0 | 5.04e-01 | 100.0% | 50.5% |
| 4074297 | 1.1.7.9 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › tRNA-synt_2c | 0.74 | 60.0 | 4.56e-01 | 100.0% | 36.5% |
| 4469793 | 1.1.8.5 ↗ | beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › tRNA_Me_trans_C | 0.74 | 61.0 | 5.27e-01 | 100.0% | 57.3% |
| 3961791 | 1.1.7.19 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › GTP_EFTU_D2 | 0.73 | 63.0 | 5.73e-01 | 100.0% | 85.0% |
| 4322439 | 1.1.7.9 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › tRNA-synt_2c | 0.73 | 55.0 | 4.22e-01 | 100.0% | 34.5% |
| 4051652 | 1.1.7.11 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM | 0.72 | 61.0 | 4.84e-01 | 100.0% | 50.5% |
| 4945251 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.68 | 52.0 | 4.21e-01 | 100.0% | 41.0% |
| 4068826 | 1.1.7.11 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM | 0.67 | 57.0 | 4.59e-01 | 100.0% | 51.1% |
| 4974669 | 4.1.1.458 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF2098 | 0.67 | 56.0 | 4.46e-01 | 100.0% | 45.6% |
| 4936051 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.66 | 58.0 | 5.36e-01 | 100.0% | 89.1% |
| 3983246 | 1.1.7.11 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM | 0.65 | 53.0 | 4.28e-01 | 100.0% | 50.5% |
| 5035742 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.65 | 57.0 | 5.11e-01 | 100.0% | 83.3% |
| 5066224 | 4.11.1.1 ↗ | beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S24 | 0.61 | 52.0 | 4.19e-01 | 100.0% | 54.4% |
| 3510786 | 4.8.1.6 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Tudor-knot | 0.60 | 51.0 | 4.51e-01 | 100.0% | 75.4% |
| 3812766 | 4.1.1.42 ↗ | beta barrels › SH3 › SH3 › SH3 › Agenet | 0.59 | 50.0 | 4.35e-01 | 100.0% | 84.3% |
| 3511593 | 2007.2.3.1 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase | 0.58 | 49.0 | 3.17e-01 | 95.3% | 24.4% |
| 3929373 | 4.1.1.233 ↗ | beta barrels › SH3 › SH3 › SH3 › Myosin_VII_N | 0.54 | 42.0 | 3.99e-01 | 100.0% | 80.0% |
| 3256508 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.53 | 42.0 | 3.55e-01 | 100.0% | 49.4% |
| 3277860 | 4.1.1.368 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF3097_N | 0.53 | 44.0 | 3.97e-01 | 100.0% | 70.8% |
| 4318553 | 2003.1.3.1 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Nucleotide-binding domain › DAO | 0.51 | 45.0 | 2.75e-01 | 100.0% | 64.3% |
| 3595169 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.51 | 41.0 | 3.64e-01 | 100.0% | 78.6% |