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MG428990.1__AUG87847.1__CPT_Menlow_146__00141

Bact-Vir

MG428990.1__AUG87847.1__CPT_Menlow_146__00141

Identity

Accession:
MG428990 ↗
Kingdom:
phage

Quality

69.8 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-57
PDB
Domain cluster: representative
CATH (46)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1jmtA00 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.78 63.0 5.14e-01 87.3% 99.0%
3to8A01 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.77 62.0 5.00e-01 87.3% 71.8%
3hi9D00 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.77 64.0 5.54e-01 90.9% 97.6%
2mgzA00 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.76 61.0 5.05e-01 87.3% 80.9%
1whwA01 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.76 61.0 5.05e-01 87.3% 83.0%
1whxA00 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.75 61.0 4.85e-01 89.1% 65.8%
2rvjA01 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.73 59.0 4.86e-01 89.1% 82.7%
4kyzA00 3.30.70.600 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 0.73 57.0 4.11e-01 89.1% 47.3%
2mzsA00 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.69 55.0 4.56e-01 89.1% 78.8%
3vtiA01 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.68 54.0 4.54e-01 89.1% 78.1%
1sjqA00 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.67 54.0 4.68e-01 89.1% 87.5%
4gi3C00 3.30.60.30 Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › 0.66 41.0 4.08e-01 87.3% 59.6%
1g6gB00 2.60.200.20 Mainly Beta › Sandwich › Tumour Suppressor Smad4 › 0.66 52.0 4.12e-01 90.9% 97.6%
5vmzA03 3.30.160.60 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger 0.65 42.0 4.86e-01 87.3% 92.5%
1vkzA02 3.30.1490.20 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › ATP-grasp fold, A domain 0.63 49.0 4.54e-01 87.3% 67.1%
6s2wA01 3.30.2260.10 Alpha Beta › 2-Layer Sandwich › ERH-like fold › Enhancer of rudimentary 0.63 54.0 4.84e-01 100.0% 93.9%
7ejoB01 3.30.2260.10 Alpha Beta › 2-Layer Sandwich › ERH-like fold › Enhancer of rudimentary 0.62 53.0 4.71e-01 100.0% 98.8%
4llgM00 3.10.20.510 Alpha Beta › Roll › Ubiquitin-like (UB roll) › RNA polymerase inhibitor 0.62 45.0 4.65e-01 89.1% 88.0%
2f4pA00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.62 43.0 3.24e-01 92.7% 29.9%
6gszA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.62 50.0 4.11e-01 90.9% 52.0%
1qysA00 3.30.1710.10 Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein 0.61 50.0 4.38e-01 100.0% 71.7%
4r3dA03 2.60.120.1680 Mainly Beta › Sandwich › Jelly Rolls › 0.60 51.0 3.81e-01 94.5% 45.3%
3au4A02 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.60 43.0 3.68e-01 87.3% 45.7%
3uv0B00 2.60.200.20 Mainly Beta › Sandwich › Tumour Suppressor Smad4 › 0.60 45.0 3.81e-01 85.5% 99.0%
4m0wA03 2.60.120.1680 Mainly Beta › Sandwich › Jelly Rolls › 0.60 51.0 3.89e-01 98.2% 55.5%
3nd1A02 3.30.950.10 Alpha Beta › 2-Layer Sandwich › Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 › Tetrapyrrole methylase, C-terminal domain 0.59 44.0 3.66e-01 89.1% 42.7%
2w9xB01 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.59 42.0 3.46e-01 94.5% 42.0%
2h5eA03 3.30.70.3280 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Peptide chain release factor 3, domain III 0.59 45.0 3.47e-01 87.3% 47.4%
2npnA02 3.30.950.10 Alpha Beta › 2-Layer Sandwich › Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 › Tetrapyrrole methylase, C-terminal domain 0.58 43.0 3.61e-01 89.1% 43.1%
4dzdA02 3.30.70.1210 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Crispr-associated protein; domain 2 0.58 45.0 3.58e-01 89.1% 94.3%
2k2eA01 3.40.1230.10 Alpha Beta › 3-Layer(aba) Sandwich › Hypothetical Protein Mth938; Chain: A, › MTH938-like 0.58 48.0 3.58e-01 90.9% 71.3%
4cgxA00 3.40.91.90 Alpha Beta › 3-Layer(aba) Sandwich › Restriction Endonuclease › Influenza RNA-dependent RNA polymerase subunit PA, endonuclease domain 0.57 40.0 2.85e-01 72.7% 27.3%
5d2lE01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.57 43.0 3.58e-01 87.3% 55.6%
1a31A03 3.90.15.10 Alpha Beta › Alpha-Beta Complex › Topoisomerase I; Chain A, domain 3 › Topoisomerase I; Chain A, domain 3 0.57 41.0 2.99e-01 76.4% 69.3%
2d93A00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.56 43.0 3.28e-01 94.5% 34.3%
3bn6A00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.56 44.0 3.23e-01 89.1% 55.7%
3fl7A05 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.56 42.0 3.69e-01 92.7% 53.5%
3nyiB01 3.40.50.10170 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.55 45.0 3.35e-01 96.4% 67.5%
4p4tA00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.54 46.0 2.86e-01 100.0% 17.0%
2xqyA03 2.60.40.3190 Mainly Beta › Sandwich › Immunoglobulin-like › Herpesvirus glycoprotein H, C-terminal domain 0.53 44.0 3.45e-01 100.0% 42.1%
1pqsA00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.53 34.0 3.20e-01 87.3% 48.1%
5z06B02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 42.0 3.58e-01 90.9% 57.6%
3m1cA04 2.60.40.3190 Mainly Beta › Sandwich › Immunoglobulin-like › Herpesvirus glycoprotein H, C-terminal domain 0.51 43.0 3.37e-01 100.0% 46.2%
5h4eA01 2.60.110.10 Mainly Beta › Sandwich › Thaumatin › Thaumatin 0.51 40.0 2.77e-01 94.5% 95.7%
3glkA03 3.30.1490.20 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › ATP-grasp fold, A domain 0.50 35.0 3.47e-01 87.3% 67.8%
1yhpA02 2.60.40.1720 Mainly Beta › Sandwich › Immunoglobulin-like › Calcium-dependent cell adhesion molecule-1 0.50 44.0 3.43e-01 100.0% 66.7%
ECOD (53)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3706084 304.9.1.0 a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD 0.80 66.0 5.41e-01 89.1% 83.2%
2507517 304.9.1.1 a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1 0.80 66.0 5.66e-01 89.1% 90.4%
3271485 304.9.1.1 a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1 0.79 68.0 5.88e-01 92.7% 91.3%
3382793 304.9.1.1 a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1 0.79 64.0 4.98e-01 87.3% 70.9%
3721611 304.9.1.94 a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_YTH1 0.78 65.0 4.99e-01 89.1% 65.2%
4448678 4.1.1.307 beta barrels › SH3 › SH3 › SH3 › PF26132 0.78 64.0 5.74e-01 89.1% 96.0%
3593320 304.9.1.0 a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD 0.78 63.0 5.42e-01 87.3% 88.2%
3669677 304.9.1.1 a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1 0.78 64.0 5.12e-01 89.1% 77.1%
3726962 304.9.1.94 a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_YTH1 0.78 64.0 5.15e-01 89.1% 72.8%
3484197 304.9.1.0 a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD 0.78 69.0 5.88e-01 96.4% 91.8%
3214530 304.9.1.86 a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › PF26088 0.78 63.0 5.08e-01 87.3% 72.0%
3897632 304.9.1.1 a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1 0.77 64.0 5.45e-01 89.1% 97.6%
3940164 304.9.1.1 a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1 0.77 64.0 4.81e-01 89.1% 59.2%
4027808 304.9.1.0 a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD 0.77 64.0 5.34e-01 89.1% 80.0%
3224221 304.9.1.1 a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1 0.77 62.0 5.03e-01 87.3% 75.0%
3371203 304.9.1.20 a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_8 0.77 61.0 5.00e-01 87.3% 79.0%
3615384 304.9.1.0 a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD 0.76 61.0 5.27e-01 87.3% 89.4%
4532856 304.9.1.1 a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1 0.76 63.0 4.54e-01 89.1% 51.7%
3631964 304.9.1.1 a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1 0.76 62.0 5.68e-01 87.3% 90.0%
3742299 304.9.1.1 a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1 0.75 61.0 4.92e-01 89.1% 71.4%
3371121 304.9.1.1 a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1 0.75 60.0 5.29e-01 87.3% 87.5%
3790066 304.9.1.1 a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1 0.75 61.0 4.77e-01 87.3% 71.8%
3595845 304.9.1.0 a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD 0.75 62.0 5.05e-01 90.9% 89.0%
3705856 4121.1.1.1 a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like › CorA 0.74 66.0 4.09e-01 100.0% 19.0%
3224917 304.9.1.18 a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › Tap-RNA_bind 0.73 57.0 5.05e-01 89.1% 90.6%
4001588 304.9.1.18 a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › Tap-RNA_bind 0.73 58.0 5.19e-01 89.1% 93.8%
3256557 304.9.1.0 a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD 0.72 59.0 5.06e-01 89.1% 90.6%
3935855 304.9.1.18 a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › Tap-RNA_bind 0.71 57.0 4.86e-01 89.1% 84.4%
3756842 304.9.1.0 a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD 0.69 56.0 4.77e-01 89.1% 84.4%
3553704 382.1.1.1 few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like › UPAR_LY6 0.69 55.0 4.74e-01 89.1% 56.7%
4976695 304.5.1.0 a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like 0.69 55.0 4.70e-01 89.1% 77.8%
5049794 301.1.1.2 a+b three layers › Bacillus chorismate mutase-like › L30e-like › L30e-like › eRF1_3 0.68 54.0 4.00e-01 89.1% 34.5%
4397568 821.1.1.1 a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG 0.67 48.0 4.06e-01 76.4% 81.1%
4623707 821.1.1.1 a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG 0.66 48.0 3.94e-01 76.4% 77.9%
4158495 821.1.1.1 a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG 0.66 47.0 4.00e-01 76.4% 81.1%
5001166 301.1.1.2 a+b three layers › Bacillus chorismate mutase-like › L30e-like › L30e-like › eRF1_3 0.66 49.0 3.69e-01 89.1% 32.6%
4151900 301.1.1.2 a+b three layers › Bacillus chorismate mutase-like › L30e-like › L30e-like › eRF1_3 0.65 50.0 3.80e-01 89.1% 34.0%
3315163 3125.1.1.1 alpha arrays › Asl3597 › Asl3597 › Asl3597 › CRR7 0.64 50.0 4.57e-01 87.3% 100.0%
3400735 379.1.1.3 few secondary structure elements › Kazal-type serine protease inhibitors-like › Kazal-type serine protease inhibitors › Kazal-type serine protease inhibitors › Kazal_2 0.63 41.0 4.16e-01 89.1% 67.3%
3704667 4121.1.1.0 a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like 0.63 54.0 3.34e-01 100.0% 22.4%
3607484 10.32.1.0 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.61 47.0 3.40e-01 85.5% 73.3%
4032618 3115.2.1.0 a+b two layers › GP2-like › GP2 › GP2 0.60 48.0 4.83e-01 89.1% 89.1%
3879226 382.1.1.3 few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like › Activin_recp 0.60 47.0 4.19e-01 87.3% 65.0%
4977431 3115.1.1.0 a+b two layers › GP2-like › RplX-like › RplX-like 0.58 46.0 4.40e-01 89.1% 75.4%
3942510 821.1.1.1 a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG 0.57 45.0 3.83e-01 89.1% 51.6%
3546356 221.1.1.113 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › RA_3 0.54 43.0 3.32e-01 89.1% 43.1%
3244906 221.1.1.113 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › RA_3 0.54 41.0 3.37e-01 85.5% 70.9%
3341765 10.12.1.0 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix 0.54 46.0 3.03e-01 92.7% 27.0%
3518750 221.1.1.6 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › RA 0.54 38.0 3.27e-01 89.1% 41.9%
3258059 4357.1.1.1 beta barrels › WWE domain › WWE domain › WWE domain › WWE 0.54 41.0 3.81e-01 87.3% 90.7%
3816922 4081.1.1.0 beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related 0.53 44.0 2.93e-01 100.0% 53.9%
1309233 3145.1.1.1 beta sandwiches › C-terminal domain of envelope glycoprotein H › C-terminal domain of envelope glycoprotein H › C-terminal domain of envelope glycoprotein H › Herpes_glycoH_C 0.53 45.0 3.36e-01 100.0% 37.8%
4943472 3662.1.1.0 a+b two layers › Proteasome assembling chaperone 3 (PAC3)-related › Proteasome assembling chaperone 3 (PAC3)-related › Proteasome assembling chaperone 3 (PAC3)-related 0.50 34.0 2.92e-01 72.7% 46.7%
D2 medium residues 58-115
PDB