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MG450654.1ATW62692.1SCBWM1_gp8__00009

Bact-Vir

MG450654.1__ATW62692.1__SCBWM1_gp8__00009

Identity

Accession:: MG450654 ↗
Kingdom:: phage

Quality

92.0 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Aokuangvirus› Synechococcus_phage_S-CBWM1

TaxID: 2053653

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 112-241

PDB

Domain cluster: representative

CATH (11)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3rguB00	1.20.5.420	Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C	0.56	36.0	4.35e-01	79.2%	98.9%
2lm9A00	1.20.58.970	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 ›	0.54	39.0	4.45e-01	80.8%	100.0%
3a98A02	1.20.1270.350	Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Dedicator of cytokinesis N-terminal subdomain	0.54	35.0	4.23e-01	93.8%	97.7%
1qv9A02	6.10.140.120	Special › Helix non-globular › Helix Hairpins ›	0.54	39.0	4.34e-01	82.3%	95.1%
3axjB02	1.20.58.200	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Translin; domain 2	0.54	33.0	3.96e-01	87.7%	92.9%
3dcfA02	1.10.357.10	Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2	0.53	33.0	3.26e-01	82.3%	56.3%
3emlA01	1.20.1070.10	Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins	0.53	47.0	3.69e-01	100.0%	83.3%
3msyA01	3.30.390.10	Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain	0.52	28.0	3.07e-01	79.2%	59.5%
3lynB00	1.20.150.10	Mainly Alpha › Up-down Bundle › Lysin › Fertilization protein	0.52	40.0	4.16e-01	93.8%	87.1%
4hr1A00	1.20.1270.410	Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 ›	0.52	44.0	4.59e-01	93.1%	100.0%
2c2jA00	1.20.1260.10	Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle	0.51	36.0	3.30e-01	92.3%	56.4%

ECOD (8)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4263647	192.13.1.1 ↗	alpha bundles › Long alpha-hairpin › ISY1 N-terminal domain-like › ISY1 N-terminal domain-like › Isy1	0.60	37.0	3.58e-01	74.6%	55.2%
3940634	601.1.3.8 ↗	alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › A middle domain of Talin 1 › PF27524	0.59	45.0	4.42e-01	95.4%	75.0%
3785849	192.13.1.1 ↗	alpha bundles › Long alpha-hairpin › ISY1 N-terminal domain-like › ISY1 N-terminal domain-like › Isy1	0.58	37.0	3.71e-01	74.6%	62.2%
3236340	192.29.1.0 ↗	alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding)	0.57	39.0	3.60e-01	70.8%	85.3%
3910152	5001.1.1.1 ↗	alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1	0.53	47.0	3.72e-01	100.0%	77.2%
3993981	304.48.1.3 ↗	a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › DNA_pol_B	0.52	40.0	3.39e-01	81.5%	85.8%
3958444	4177.1.1.43 ↗	alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like › Hydro_N_hd	0.52	45.0	3.78e-01	91.5%	94.8%
3932021	5001.1.1.0 ↗	alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like	0.51	44.0	3.55e-01	96.2%	80.0%

D2 high residues 414-465

PDB

Domain cluster: representative

CATH (4)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2kslA00	1.10.2010.20	Mainly Alpha › Orthogonal Bundle › Crustacean CHH/MIH/GIH neurohormone ›	0.60	41.0	4.16e-01	100.0%	72.5%
1o0sA03	3.40.50.10380	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Malic enzyme, N-terminal domain	0.56	47.0	3.22e-01	100.0%	41.2%
1q8bA00	3.30.70.100	Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits ›	0.54	46.0	3.83e-01	98.1%	74.2%
3l2oB01	1.20.1280.50	Mainly Alpha › Up-down Bundle › Monooxygenase ›	0.52	36.0	3.21e-01	78.8%	65.9%

ECOD (1)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
184745	539.1.1.0 ↗	few secondary structure elements › Crustacean Hyperglycemic Hormone (CHH)-like › Crustacean Hyperglycemic Hormone (CHH)-like › Crustacean Hyperglycemic Hormone (CHH)-like	0.60	41.0	4.16e-01	100.0%	72.5%

D3 medium residues 48-58_245-363

PDB

Domain cluster: representative

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF12851.14 best	Tet_JBP	42.3	6.50e-11	87.7%	64.0%

ECOD (4)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4110857	10.12.1.47 ↗	beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Tet_JBP	0.88	83.0	6.40e-01	98.5%	71.8%
3600503	10.12.1.0 ↗	beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix	0.87	83.0	6.43e-01	98.5%	73.2%
3379087	10.12.1.0 ↗	beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix	0.56	38.0	3.71e-01	98.5%	62.5%
4460221	304.24.1.1 ↗	a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like › EFG_C	0.53	25.0	2.93e-01	83.8%	62.4%

D4 medium residues 59-111_364-413

PDB

Domain cluster: representative

CATH (1)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
5cg8A00	3.60.130.30	Alpha Beta › 4-Layer Sandwich › Double-stranded beta-helix ›	0.76	71.0	5.14e-01	100.0%	81.2%

ECOD (1)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4241750	6129.1.1.1 ↗	beta barrels › Repulsive guidance molecule (RGM) family › Repulsive guidance molecule (RGM) family › Repulsive guidance molecule (RGM) family › VWD	0.54	36.0	2.88e-01	99.0%	35.5%