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MG450654.1__ATW62696.1__SCBWM1_gp12__00013

Bact-Vir

MG450654.1__ATW62696.1__SCBWM1_gp12__00013

Identity

Accession:
MG450654 ↗
Kingdom:
phage

Quality

90.3 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-66
PDB
Domain cluster: representative
CATH (65)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5iqaA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.78 66.0 5.86e-01 92.3% 74.4%
4gyiA02 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.77 70.0 6.01e-01 98.5% 90.8%
2x6hA02 3.30.1010.10 Alpha Beta › 2-Layer Sandwich › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 4 › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 4 0.76 65.0 4.93e-01 96.9% 47.8%
2nooA01 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.75 66.0 4.36e-01 100.0% 31.7%
6zxfz01 1.10.510.10 Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 0.74 66.0 5.34e-01 100.0% 81.3%
5yhgA01 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.74 64.0 4.23e-01 100.0% 30.2%
1zu0A02 3.90.76.10 Alpha Beta › Alpha-Beta Complex › Dipeptide-binding Protein; domain 1 › Dipeptide-binding Protein; Domain 1 0.73 65.0 5.53e-01 100.0% 79.4%
1e7uA04 3.30.1010.10 Alpha Beta › 2-Layer Sandwich › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 4 › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 4 0.72 61.0 4.64e-01 96.9% 50.0%
3akjA01 3.30.200.120 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › 0.70 59.0 5.64e-01 92.3% 83.8%
3havA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.69 59.0 5.33e-01 96.9% 71.9%
3dxqA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.68 58.0 5.34e-01 96.9% 73.5%
2vd5B01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.66 58.0 4.19e-01 100.0% 41.2%
4lrjA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.63 54.0 5.22e-01 93.8% 87.7%
3va7A05 3.30.1360.40 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › 0.61 53.0 4.65e-01 100.0% 78.0%
2gmlA02 3.30.70.1560 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Alpha-L RNA-binding motif 0.61 45.0 4.36e-01 83.1% 70.3%
2xhcA01 3.30.70.940 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › NusG, N-terminal domain 0.61 44.0 4.00e-01 83.1% 54.7%
3pgvA02 3.30.1240.10 Alpha Beta › 2-Layer Sandwich › Hypothetical Protein, Haloacid Dehalogenase-like Hydrolase; Chain: A; domain 2 › 0.59 50.0 4.32e-01 93.8% 86.1%
2phcB01 3.30.1360.40 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › 0.59 48.0 4.47e-01 92.3% 77.1%
2amyA02 3.30.1240.20 Alpha Beta › 2-Layer Sandwich › Hypothetical Protein, Haloacid Dehalogenase-like Hydrolase; Chain: A; domain 2 › Eukaryotic phosphomannomutase, cap domain 0.59 49.0 4.22e-01 92.3% 79.4%
2hf2B02 3.30.1240.10 Alpha Beta › 2-Layer Sandwich › Hypothetical Protein, Haloacid Dehalogenase-like Hydrolase; Chain: A; domain 2 › 0.59 49.0 4.15e-01 92.3% 85.0%
1zodA01 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.58 50.0 3.99e-01 100.0% 55.3%
2hw6A01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.58 48.0 4.42e-01 96.9% 79.5%
2wb6A00 3.90.1150.90 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › 0.58 53.0 4.33e-01 100.0% 62.3%
6liuC02 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.58 50.0 4.21e-01 100.0% 62.1%
4j27A02 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.58 50.0 4.58e-01 98.5% 87.6%
5g4iB01 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.58 48.0 3.78e-01 100.0% 48.1%
4feuF01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.58 46.0 4.47e-01 92.3% 87.7%
3ec6A00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.58 50.0 4.07e-01 100.0% 84.4%
5dx9A01 3.30.70.1020 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Trehalose-6-phosphate phosphatase related protein; domain 2 0.57 47.0 4.63e-01 93.8% 90.3%
4r78A01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.57 47.0 4.27e-01 98.5% 72.9%
3ezjA02 3.30.1370.120 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › 0.57 42.0 4.14e-01 83.1% 75.0%
4dezA01 3.30.70.270 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain 0.57 41.0 3.61e-01 83.1% 50.5%
1szsA01 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.57 48.0 3.71e-01 100.0% 46.1%
3ofgB00 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.57 43.0 3.98e-01 83.1% 72.4%
3dxvA01 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.57 48.0 3.77e-01 100.0% 50.7%
2x7gA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.57 46.0 4.30e-01 96.9% 79.5%
4lowA00 3.30.1360.20 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › Transcriptional coactivator/pterin dehydratase 0.57 47.0 4.38e-01 95.4% 89.3%
2ijrA01 3.30.70.1270 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Api92-like domains 0.56 41.0 3.59e-01 83.1% 51.5%
6fucA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.56 44.0 4.20e-01 95.4% 98.8%
4q5eA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.56 46.0 4.44e-01 95.4% 89.3%
1tuwA00 3.30.70.1090 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Dimeric alpha+beta barrel. 0.56 42.0 3.65e-01 83.1% 58.5%
1whvA00 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.56 39.0 3.46e-01 80.0% 49.0%
4bndA02 3.30.1240.20 Alpha Beta › 2-Layer Sandwich › Hypothetical Protein, Haloacid Dehalogenase-like Hydrolase; Chain: A; domain 2 › Eukaryotic phosphomannomutase, cap domain 0.55 46.0 4.05e-01 92.3% 84.4%
3h5xA03 3.30.70.270 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain 0.55 37.0 3.17e-01 84.6% 40.5%
1s9iB01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.54 45.0 4.16e-01 100.0% 77.4%
1uxyA03 3.30.465.10 Alpha Beta › 2-Layer Sandwich › Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 › 0.54 46.0 3.48e-01 92.3% 89.3%
3nynA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.54 44.0 3.59e-01 100.0% 51.0%
1uv7A00 3.30.1360.100 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › General secretion pathway protein M, EpsM 0.53 44.0 4.26e-01 95.4% 90.8%
3onqA02 3.30.70.2730 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.53 40.0 3.77e-01 83.1% 65.4%
3aqoA01 3.30.70.3400 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.53 40.0 3.82e-01 83.1% 71.2%
5w2fA01 3.30.780.10 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor Eif1 › SUI1-like domain 0.53 42.0 3.94e-01 90.8% 70.9%
3i5tB01 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.52 43.0 3.38e-01 100.0% 40.9%
3c1mA02 3.30.2130.10 Alpha Beta › 2-Layer Sandwich › VC0802-like › VC0802-like 0.52 44.0 3.33e-01 95.4% 90.2%
5xamA02 3.30.70.3220 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.52 39.0 2.98e-01 81.5% 85.7%
4ofzA03 3.30.70.3080 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.52 43.0 3.93e-01 93.8% 78.7%
4djmA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 39.0 3.72e-01 95.4% 67.5%
1vbkA01 3.30.70.1510 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › THUMP domain-like 0.52 38.0 3.62e-01 83.1% 75.9%
1fi4A02 3.30.70.890 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › GHMP kinase, C-terminal domain 0.52 43.0 3.10e-01 93.8% 92.9%
1rkqA02 3.30.1240.10 Alpha Beta › 2-Layer Sandwich › Hypothetical Protein, Haloacid Dehalogenase-like Hydrolase; Chain: A; domain 2 › 0.51 42.0 3.66e-01 93.8% 87.9%
2cdqA03 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.51 41.0 3.92e-01 95.4% 78.6%
2e9hA01 3.30.30.170 Alpha Beta › 2-Layer Sandwich › Defensin A-like › 0.51 44.0 3.76e-01 100.0% 74.3%
5axmB00 3.30.70.3000 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › tRNA(His) guanylyltransferase (Thg1) 0.51 39.0 2.69e-01 83.1% 90.4%
5iryA05 2.60.40.60 Mainly Beta › Sandwich › Immunoglobulin-like › Cadherins 0.51 43.0 3.98e-01 98.5% 72.9%
1nyrA03 3.30.930.10 Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 0.51 41.0 2.70e-01 92.3% 54.1%
3cuqA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.50 34.0 3.24e-01 72.3% 91.4%
ECOD (82)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3273018 206.1.1.11 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › APH 0.80 71.0 4.35e-01 100.0% 26.7%
4932634 206.1.1.9 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › RIO1 0.79 73.0 5.10e-01 100.0% 38.4%
5067728 206.1.1.0 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase 0.76 69.0 4.56e-01 100.0% 27.5%
5058238 206.1.1.9 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › RIO1 0.75 68.0 4.56e-01 100.0% 42.1%
4485360 206.1.1.7 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › PI3_PI4_kinase 0.72 64.0 4.02e-01 100.0% 21.2%
184277 206.1.1.11 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › APH 0.71 62.0 4.04e-01 100.0% 22.4%
3610464 206.1.1.7 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › PI3_PI4_kinase 0.70 59.0 3.68e-01 100.0% 18.8%
2103565 206.1.1.11 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › APH 0.69 60.0 3.92e-01 100.0% 23.3%
3975695 206.1.1.11 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › APH 0.68 61.0 3.97e-01 100.0% 23.7%
5012591 304.136.1.1 a+b two layers › Alpha-beta plaits › Oligo-peptide binding protein (OPPA) insertion domain › Oligo-peptide binding protein (OPPA) insertion domain › SBP_bac_5 0.68 60.0 5.16e-01 100.0% 77.1%
3037389 206.1.1.11 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › APH 0.68 59.0 3.87e-01 100.0% 23.8%
4967029 304.136.1.0 a+b two layers › Alpha-beta plaits › Oligo-peptide binding protein (OPPA) insertion domain › Oligo-peptide binding protein (OPPA) insertion domain 0.67 57.0 5.03e-01 98.5% 80.0%
3283785 306.6.1.1 a+b two layers › Glucose permease domain IIB-like › PH0987 N-terminal domain-like › PH0987 N-terminal domain-like › CT_C_D 0.66 58.0 5.25e-01 100.0% 83.3%
3386666 306.6.1.1 a+b two layers › Glucose permease domain IIB-like › PH0987 N-terminal domain-like › PH0987 N-terminal domain-like › CT_C_D 0.65 55.0 4.99e-01 95.4% 77.8%
4079590 306.6.1.1 a+b two layers › Glucose permease domain IIB-like › PH0987 N-terminal domain-like › PH0987 N-terminal domain-like › CT_C_D 0.63 55.0 4.82e-01 100.0% 77.0%
4937181 305.1.1.2 a+b two layers › DCoH-like › RBP11-like subunits of RNA polymerase › RBP11-like subunits of RNA polymerase › RNA_pol_L_2 0.62 52.0 4.86e-01 93.8% 75.0%
3987706 206.1.1.29 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › DUF4135 0.61 50.0 2.99e-01 100.0% 17.4%
5054618 101.1.2.28 alpha arrays › HTH › HTH › winged helix domain › eIF-5_eIF-2B 0.61 49.0 4.57e-01 93.8% 71.2%
4159307 3016.1.1.0 a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases 0.60 53.0 5.11e-01 98.5% 93.3%
3967558 306.6.1.1 a+b two layers › Glucose permease domain IIB-like › PH0987 N-terminal domain-like › PH0987 N-terminal domain-like › CT_C_D 0.60 51.0 4.66e-01 93.8% 77.6%
4596173 206.1.1.71 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase, Kdo 0.60 49.0 3.18e-01 100.0% 20.5%
5054685 4955.1.1.0 a+b two layers › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit 0.59 52.0 4.84e-01 98.5% 87.5%
4943247 4955.1.1.12 a+b two layers › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › RNA_pol_Rpb1_5 0.59 51.0 4.59e-01 98.5% 82.2%
4929638 101.1.2.28 alpha arrays › HTH › HTH › winged helix domain › eIF-5_eIF-2B 0.58 47.0 4.63e-01 95.4% 82.9%
4526772 3016.1.1.10 a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › GDC-P 0.58 52.0 5.12e-01 100.0% 100.0%
4927597 873.1.1.0 a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain 0.58 48.0 3.97e-01 95.4% 50.4%
4978015 3016.1.1.0 a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases 0.58 49.0 4.36e-01 100.0% 76.0%
1891414 3016.1.1.2 a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › Aminotran_3 0.58 49.0 4.25e-01 100.0% 71.3%
4927528 873.1.1.0 a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain 0.58 49.0 4.04e-01 96.9% 52.0%
4997336 3016.1.1.0 a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases 0.58 48.0 4.39e-01 100.0% 74.7%
4943550 101.1.2.28 alpha arrays › HTH › HTH › winged helix domain › eIF-5_eIF-2B 0.57 49.0 4.59e-01 96.9% 76.2%
4420323 3016.1.1.0 a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases 0.57 47.0 4.38e-01 98.5% 80.0%
5006953 873.1.1.12 a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain › PF27313 0.57 49.0 4.29e-01 96.9% 68.0%
3365716 304.8.1.0 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.57 48.0 4.42e-01 93.8% 80.0%
4011314 3012.1.1.0 a+b two layers › Cof C2 cap domain › Cof C2 cap domain › Cof C2 cap domain 0.57 48.0 4.49e-01 93.8% 81.2%
3450997 3012.1.1.1 a+b two layers › Cof C2 cap domain › Cof C2 cap domain › Cof C2 cap domain › Trehalose_PPase 0.57 47.0 4.15e-01 93.8% 64.0%
3815383 304.8.1.0 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.57 48.0 4.46e-01 95.4% 78.8%
4942002 304.51.1.0 a+b two layers › Alpha-beta plaits › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › CRISPR transcript (pre-crRNA) processing endoribonuclease-related 0.57 42.0 4.11e-01 83.1% 77.3%
4994703 4955.1.1.0 a+b two layers › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit 0.57 50.0 4.59e-01 98.5% 85.9%
5025944 304.165.1.0 a+b two layers › Alpha-beta plaits › Uncharacterized protein Ta1207 › Uncharacterized protein Ta1207 0.57 46.0 3.53e-01 96.9% 65.1%
3968350 3016.1.1.2 a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › Aminotran_3 0.56 48.0 4.45e-01 100.0% 85.9%
3353024 206.1.1.20 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › PK_Tyr_Ser-Thr 0.56 48.0 3.23e-01 100.0% 24.6%
3460668 3012.1.1.1 a+b two layers › Cof C2 cap domain › Cof C2 cap domain › Cof C2 cap domain › Trehalose_PPase 0.56 46.0 4.46e-01 92.3% 84.0%
1036625 3122.1.1.1 a+b complex topology › MESD › MESD › MESD › Mesd 0.56 43.0 4.06e-01 83.1% 71.8%
None 0.56 45.0 3.03e-01 90.8% 22.2%
4951829 3012.1.1.1 a+b two layers › Cof C2 cap domain › Cof C2 cap domain › Cof C2 cap domain › Trehalose_PPase 0.56 47.0 4.54e-01 93.8% 85.3%
4519566 4955.1.1.0 a+b two layers › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit 0.56 48.0 4.57e-01 98.5% 88.7%
3195389 304.9.1.43 a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › NCBP3 0.56 45.0 3.51e-01 87.7% 62.9%
5062792 3012.1.1.0 a+b two layers › Cof C2 cap domain › Cof C2 cap domain › Cof C2 cap domain 0.56 46.0 4.44e-01 93.8% 90.7%
5029856 4955.1.1.0 a+b two layers › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit 0.56 48.0 4.46e-01 98.5% 90.6%
5055828 304.28.1.0 a+b two layers › Alpha-beta plaits › Ferredoxin domains in multidrug efflux transporter › Multidrug efflux transporter AcrB pore domain 0.56 42.0 3.99e-01 83.1% 70.0%
3807514 2006.1.1.3 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › Trehalose_PPase 0.56 46.0 3.09e-01 93.8% 23.3%
4996212 2006.1.1.3 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › Trehalose_PPase 0.55 46.0 3.16e-01 93.8% 26.7%
3496951 206.1.1.0 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase 0.55 42.0 2.67e-01 86.2% 65.2%
3283852 304.48.1.10 a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › IMS 0.55 42.0 3.43e-01 83.1% 44.0%
3670277 3012.1.1.1 a+b two layers › Cof C2 cap domain › Cof C2 cap domain › Cof C2 cap domain › Trehalose_PPase 0.55 46.0 4.45e-01 93.8% 85.3%
4956034 306.3.1.6 a+b two layers › Glucose permease domain IIB-like › eIF1-like › eIF1-like › DEAD_assoc 0.55 48.0 3.57e-01 100.0% 41.7%
3471727 304.9.1.1 a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1 0.55 40.0 3.75e-01 80.0% 65.9%
3955512 305.1.1.0 a+b two layers › DCoH-like › RBP11-like subunits of RNA polymerase › RBP11-like subunits of RNA polymerase 0.55 45.0 3.78e-01 95.4% 72.5%
3817329 2006.1.1.3 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › Trehalose_PPase 0.55 45.0 2.96e-01 92.3% 22.5%
3304041 3012.1.1.1 a+b two layers › Cof C2 cap domain › Cof C2 cap domain › Cof C2 cap domain › Trehalose_PPase 0.55 44.0 4.15e-01 90.8% 78.8%
4980414 3012.1.1.0 a+b two layers › Cof C2 cap domain › Cof C2 cap domain › Cof C2 cap domain 0.55 45.0 4.24e-01 92.3% 76.2%
4180623 3012.1.1.1 a+b two layers › Cof C2 cap domain › Cof C2 cap domain › Cof C2 cap domain › Trehalose_PPase 0.54 45.0 4.25e-01 93.8% 80.0%
5079685 5104.1.1.0 a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases 0.54 46.0 3.80e-01 100.0% 80.0%
5057340 3012.1.1.0 a+b two layers › Cof C2 cap domain › Cof C2 cap domain › Cof C2 cap domain 0.54 46.0 4.20e-01 93.8% 75.3%
3594603 3012.1.1.0 a+b two layers › Cof C2 cap domain › Cof C2 cap domain › Cof C2 cap domain 0.54 44.0 3.87e-01 92.3% 81.0%
5000991 241.1.1.0 a+b two layers › Type III secretory system chaperone-like › Type III secretory system chaperone › Type III secretory system chaperone 0.54 45.0 3.73e-01 100.0% 65.4%
3249558 3012.1.1.1 a+b two layers › Cof C2 cap domain › Cof C2 cap domain › Cof C2 cap domain › Trehalose_PPase 0.53 43.0 4.07e-01 93.8% 80.0%
4072180 304.36.1.1 a+b two layers › Alpha-beta plaits › YajQ-like › YajQ-like › DUF520 0.53 45.0 3.90e-01 95.4% 75.0%
5020278 3012.1.1.19 a+b two layers › Cof C2 cap domain › Cof C2 cap domain › Cof C2 cap domain › PF27313 0.52 44.0 3.66e-01 93.8% 55.7%
5034952 2006.1.1.3 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › Trehalose_PPase 0.52 44.0 2.91e-01 93.8% 24.2%
4069390 305.2.1.1 a+b two layers › DCoH-like › Pterin-4a-carbinolamine dehydratase (PCD)/dimerization cofactor of HNF1 (DCoH) › Pterin-4a-carbinolamine dehydratase (PCD)/dimerization cofactor of HNF1 (DCoH) › Pterin_4a 0.52 43.0 3.91e-01 100.0% 72.6%
3597966 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.51 44.0 3.92e-01 96.9% 70.5%
4948770 241.6.1.2 a+b two layers › Type III secretory system chaperone-like › Arp2/3 complex subunits › Arp2/3 complex subunits › ARPC4 0.51 44.0 3.77e-01 100.0% 62.7%
3739823 331.4.1.0 a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 0.51 39.0 3.26e-01 86.2% 85.6%
3969148 305.2.1.1 a+b two layers › DCoH-like › Pterin-4a-carbinolamine dehydratase (PCD)/dimerization cofactor of HNF1 (DCoH) › Pterin-4a-carbinolamine dehydratase (PCD)/dimerization cofactor of HNF1 (DCoH) › Pterin_4a 0.51 41.0 3.68e-01 98.5% 64.8%
3325727 3887.2.1.1 a+b two layers › Yeast killer toxin-like › Antifungal protein ginkbilobin-2 › Antifungal protein ginkbilobin-2 › Stress-antifung 0.51 37.0 3.27e-01 83.1% 87.3%
3622943 101.1.2.28 alpha arrays › HTH › HTH › winged helix domain › eIF-5_eIF-2B 0.51 40.0 3.91e-01 95.4% 80.0%
4948745 2006.1.1.3 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › Trehalose_PPase 0.51 41.0 2.79e-01 92.3% 23.0%
5038375 4081.1.1.2 beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › VIT 0.50 41.0 3.11e-01 100.0% 49.0%
5029251 242.1.1.0 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases 0.50 42.0 3.95e-01 100.0% 87.1%
4975800 241.1.1.0 a+b two layers › Type III secretory system chaperone-like › Type III secretory system chaperone › Type III secretory system chaperone 0.50 41.0 3.38e-01 100.0% 60.7%
D2 high residues 74-260
PDB
CATH (26)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4o7oA02 3.90.1200.10 Alpha Beta › Alpha-Beta Complex › Aminoglycoside 3'-phosphotransferase; Chain: A, domain 2 › Aminoglycoside phosphotransferase (APH), C-terminal lobe 0.76 70.0 6.35e-01 96.3% 84.9%
2qg7B02 3.90.1200.10 Alpha Beta › Alpha-Beta Complex › Aminoglycoside 3'-phosphotransferase; Chain: A, domain 2 › Aminoglycoside phosphotransferase (APH), C-terminal lobe 0.76 70.0 6.18e-01 97.9% 86.3%
3w0oA02 3.90.1200.10 Alpha Beta › Alpha-Beta Complex › Aminoglycoside 3'-phosphotransferase; Chain: A, domain 2 › Aminoglycoside phosphotransferase (APH), C-terminal lobe 0.76 71.0 6.67e-01 100.0% 86.7%
3atsA02 3.90.1200.10 Alpha Beta › Alpha-Beta Complex › Aminoglycoside 3'-phosphotransferase; Chain: A, domain 2 › Aminoglycoside phosphotransferase (APH), C-terminal lobe 0.75 70.0 6.48e-01 100.0% 89.4%
3dxqB02 3.90.1200.10 Alpha Beta › Alpha-Beta Complex › Aminoglycoside 3'-phosphotransferase; Chain: A, domain 2 › Aminoglycoside phosphotransferase (APH), C-terminal lobe 0.74 70.0 6.71e-01 100.0% 91.5%
4ocqA01 3.90.1200.10 Alpha Beta › Alpha-Beta Complex › Aminoglycoside 3'-phosphotransferase; Chain: A, domain 2 › Aminoglycoside phosphotransferase (APH), C-terminal lobe 0.73 68.0 6.20e-01 99.5% 96.7%
3tdvA02 3.90.1200.10 Alpha Beta › Alpha-Beta Complex › Aminoglycoside 3'-phosphotransferase; Chain: A, domain 2 › Aminoglycoside phosphotransferase (APH), C-terminal lobe 0.72 66.0 6.42e-01 96.8% 92.7%
4r78A02 3.90.1200.10 Alpha Beta › Alpha-Beta Complex › Aminoglycoside 3'-phosphotransferase; Chain: A, domain 2 › Aminoglycoside phosphotransferase (APH), C-terminal lobe 0.72 65.0 6.54e-01 97.9% 95.3%
7s3lA01 3.90.1200.10 Alpha Beta › Alpha-Beta Complex › Aminoglycoside 3'-phosphotransferase; Chain: A, domain 2 › Aminoglycoside phosphotransferase (APH), C-terminal lobe 0.71 59.0 6.30e-01 90.9% 98.2%
6fucA02 3.90.1200.10 Alpha Beta › Alpha-Beta Complex › Aminoglycoside 3'-phosphotransferase; Chain: A, domain 2 › Aminoglycoside phosphotransferase (APH), C-terminal lobe 0.71 59.0 5.97e-01 86.1% 91.8%
3csvA02 3.90.1200.10 Alpha Beta › Alpha-Beta Complex › Aminoglycoside 3'-phosphotransferase; Chain: A, domain 2 › Aminoglycoside phosphotransferase (APH), C-terminal lobe 0.71 67.0 6.09e-01 100.0% 83.7%
3i1aA02 1.10.510.10 Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 0.69 38.0 4.88e-01 78.6% 91.7%
3lzhA02 3.90.1200.10 Alpha Beta › Alpha-Beta Complex › Aminoglycoside 3'-phosphotransferase; Chain: A, domain 2 › Aminoglycoside phosphotransferase (APH), C-terminal lobe 0.68 60.0 5.90e-01 92.5% 91.9%
5bylA02 3.90.1200.10 Alpha Beta › Alpha-Beta Complex › Aminoglycoside 3'-phosphotransferase; Chain: A, domain 2 › Aminoglycoside phosphotransferase (APH), C-terminal lobe 0.68 60.0 5.93e-01 94.7% 91.5%
7w15A02 3.90.1200.10 Alpha Beta › Alpha-Beta Complex › Aminoglycoside 3'-phosphotransferase; Chain: A, domain 2 › Aminoglycoside phosphotransferase (APH), C-terminal lobe 0.68 59.0 5.86e-01 92.0% 91.8%
3u8vA00 1.20.120.660 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › IL-4 antagonist (De novo design) like domain 0.61 23.0 3.36e-01 81.3% 74.7%
5bn3A04 1.10.1140.10 Mainly Alpha › Orthogonal Bundle › Bovine Mitochondrial F1-ATPase, ATP Synthase Beta Chain; Chain D, domain3 › Bovine Mitochondrial F1-atpase; Atp Synthase Beta Chain; Chain D, domain 3 0.60 33.0 3.76e-01 88.2% 71.2%
1li5A02 1.20.120.640 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 0.59 28.0 4.00e-01 85.0% 95.4%
6qumA04 1.10.1140.10 Mainly Alpha › Orthogonal Bundle › Bovine Mitochondrial F1-ATPase, ATP Synthase Beta Chain; Chain D, domain3 › Bovine Mitochondrial F1-atpase; Atp Synthase Beta Chain; Chain D, domain 3 0.57 33.0 3.63e-01 88.2% 70.5%
2wb7A03 1.20.120.870 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › pT26-6p, five-helical bundle domain 0.55 39.0 4.46e-01 96.8% 98.5%
5jc3A02 1.20.1320.30 Mainly Alpha › Up-down Bundle › phosphoenolpyruvate carboxylase, domain 3 › 0.53 28.0 3.35e-01 100.0% 73.0%
2i88A00 1.10.490.30 Mainly Alpha › Orthogonal Bundle › Globin-like › Colicin 0.52 43.0 4.46e-01 88.2% 93.8%
3p86A02 1.10.510.10 Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 0.52 34.0 3.65e-01 81.8% 75.6%
1zxeC02 1.10.510.10 Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 0.51 36.0 3.71e-01 81.3% 73.5%
1lwbA00 1.20.90.10 Mainly Alpha › Up-down Bundle › Phospholipase A2 › Phospholipase A2 domain 0.51 33.0 3.91e-01 96.3% 96.7%
4i1mB01 1.20.120.1700 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.50 30.0 3.49e-01 88.8% 82.9%
ECOD (29)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3567103 206.1.1.11 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › APH 0.80 75.0 5.91e-01 100.0% 60.5%
None 0.79 75.0 5.86e-01 100.0% 59.7%
5032923 206.1.1.0 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase 0.79 72.0 5.86e-01 96.3% 63.0%
5041490 206.1.1.11 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › APH 0.79 74.0 5.91e-01 99.5% 63.8%
3788034 206.1.1.11 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › APH 0.79 73.0 5.65e-01 100.0% 62.1%
3963069 206.1.1.11 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › APH 0.78 71.0 6.81e-01 96.3% 99.5%
5032114 206.1.1.11 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › APH 0.78 72.0 5.82e-01 97.9% 62.4%
3289559 206.1.1.0 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase 0.78 69.0 5.79e-01 93.6% 65.7%
4260517 243.18.1.0 a+b two layers › Cystatin-like › Maltokinase N-terminal domain › Maltokinase N-terminal domain 0.77 71.0 5.22e-01 96.8% 46.8%
3814980 206.1.1.10 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Choline_kinase 0.77 72.0 5.64e-01 100.0% 58.3%
3267451 206.1.1.10 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Choline_kinase 0.76 71.0 5.76e-01 99.5% 64.7%
3970994 206.1.1.11 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › APH 0.76 70.0 5.66e-01 97.3% 61.2%
3971808 206.1.1.0 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase 0.75 69.0 5.38e-01 97.9% 65.6%
3969507 206.1.1.0 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase 0.74 65.0 5.71e-01 98.4% 65.7%
3947367 206.1.1.35 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › APH_6_hur 0.72 65.0 5.72e-01 99.5% 66.3%
1229147 206.1.1.11 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › APH 0.72 67.0 5.59e-01 98.4% 63.9%
3988238 206.1.1.11 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › APH 0.72 65.0 5.83e-01 97.3% 71.0%
1284003 206.1.1.11 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › APH 0.71 58.0 5.09e-01 84.5% 61.4%
4031201 206.1.1.15 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Fructosamin_kin 0.71 65.0 5.59e-01 97.3% 68.6%
3309686 206.1.1.15 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Fructosamin_kin 0.66 61.0 5.16e-01 100.0% 64.0%
5012559 6028.1.1.0 alpha bundles › Ribosome modulation factor › Ribosome modulation factor › Ribosome modulation factor 0.62 25.0 3.86e-01 88.2% 92.0%
3301471 5067.1.1.17 alpha bundles › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain › AtTam38 0.59 33.0 4.12e-01 81.8% 91.8%
3685989 601.1.2.115 alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › I/LWEQ domain (Pfam 01608) › DUF3433 0.57 35.0 3.60e-01 80.2% 64.0%
3909447 601.1.2.63 alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › I/LWEQ domain (Pfam 01608) › HIP1R 0.56 31.0 3.75e-01 87.2% 80.8%
3693664 601.16.1.19 alpha bundles › Four-helical up-and-down bundle › FAT domain of focal adhesion kinase › FAT domain of focal adhesion kinase › DUF3433 0.54 33.0 3.41e-01 79.1% 62.2%
3308892 3273.1.1.9 alpha arrays › Filamentous archaeal viruses coat proteins › Filamentous archaeal viruses coat proteins › Filamentous archaeal viruses coat proteins › AtTam38 0.54 32.0 3.65e-01 83.4% 77.0%
3189990 3684.1.1.25 alpha complex topology › PSPTO4464 C-terminal domain-like › PSPTO4464 C-terminal domain-like › PSPTO4464 C-terminal domain-like › DUF3433 0.53 33.0 3.49e-01 79.1% 66.9%
3417048 2498.1.1.5 mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M13,Peptidase_M13_N 0.52 43.0 2.99e-01 88.8% 97.7%
3194102 601.1.1.90 alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin › DUF3433 0.52 31.0 3.45e-01 78.6% 74.5%