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MG450654.1__ATW62735.1__SCBWM1_gp51__00052

Bact-Vir

MG450654.1__ATW62735.1__SCBWM1_gp51__00052

Identity

Accession:
MG450654 ↗
Kingdom:
phage

Quality

48.1 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Aokuangvirus› Synechococcus_phage_S-CBWM1

TaxID: 2053653

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 82-150
PDB
D2 high residues 158-224
PDB
D3 medium residues 7-73
PDB
D4 medium residues 248-300
PDB
Domain cluster: rep: 04302015_21_scaffold_10_prodigal-single.1__X__X__00148__DFULL
CATH (19)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4pkfB00 4.10.490.20 Few Secondary Structures › Irregular › High-Potential Iron-Sulfur Protein; Chain A › 0.80 69.0 6.22e-01 92.5% 79.7%
1isuA00 4.10.490.10 Few Secondary Structures › Irregular › High-Potential Iron-Sulfur Protein; Chain A › High potential iron-sulphur protein 0.80 65.0 6.18e-01 92.5% 75.8%
2y8nB01 2.20.70.100 Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › 0.80 59.0 6.57e-01 83.0% 100.0%
3h31A00 4.10.490.10 Few Secondary Structures › Irregular › High-Potential Iron-Sulfur Protein; Chain A › High potential iron-sulphur protein 0.79 64.0 5.65e-01 98.1% 62.2%
2y8nB02 2.20.70.100 Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › 0.79 61.0 6.59e-01 83.0% 100.0%
1b0yA00 4.10.490.10 Few Secondary Structures › Irregular › High-Potential Iron-Sulfur Protein; Chain A › High potential iron-sulphur protein 0.77 67.0 5.68e-01 96.2% 67.1%
1hlqA00 4.10.490.10 Few Secondary Structures › Irregular › High-Potential Iron-Sulfur Protein; Chain A › High potential iron-sulphur protein 0.73 63.0 5.53e-01 94.3% 72.0%
2id0A01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.60 41.0 3.66e-01 71.7% 75.6%
1whzA00 3.30.920.30 Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Hypothetical protein. 0.59 46.0 4.27e-01 88.7% 98.6%
2bouA01 2.10.25.10 Mainly Beta › Ribbon › Laminin › Laminin 0.58 37.0 3.97e-01 71.7% 77.8%
7zhhA02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.57 39.0 3.70e-01 71.7% 97.0%
2rhiA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.57 44.0 3.57e-01 88.7% 59.8%
1wjqA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.57 40.0 3.61e-01 75.5% 74.4%
3dlbA04 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.54 38.0 2.81e-01 79.2% 83.4%
3mtsA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.54 40.0 3.84e-01 81.1% 75.8%
5n70A02 2.40.70.10 Mainly Beta › Beta Barrel › Cathepsin D, subunit A; domain 1 › Acid Proteases 0.53 38.0 2.78e-01 77.4% 72.7%
3nppA00 2.40.50.480 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Protein of unknown function DUF1093 0.51 35.0 3.06e-01 71.7% 48.3%
1xr0B01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.51 37.0 3.25e-01 83.0% 82.4%
4k17B01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.51 37.0 3.02e-01 81.1% 66.7%
ECOD (16)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4217737 374.1.1.5 ↗ few secondary structure elements › HIPIP (high potential iron protein) › HIPIP (high potential iron protein) › HIPIP (high potential iron protein) › 4HPAD_g_N 0.86 62.0 6.96e-01 86.8% 100.0%
137486 374.1.1.1 ↗ few secondary structure elements › HIPIP (high potential iron protein) › HIPIP (high potential iron protein) › HIPIP (high potential iron protein) › HIPIP 0.80 64.0 5.72e-01 94.3% 62.2%
1309698 374.1.1.3 ↗ few secondary structure elements › HIPIP (high potential iron protein) › HIPIP (high potential iron protein) › HIPIP (high potential iron protein) › BssB_TutG 0.80 69.0 6.22e-01 92.5% 79.7%
146829 374.1.1.5 ↗ few secondary structure elements › HIPIP (high potential iron protein) › HIPIP (high potential iron protein) › HIPIP (high potential iron protein) › 4HPAD_g_N 0.79 58.0 6.50e-01 81.1% 100.0%
4483987 374.1.1.2 ↗ few secondary structure elements › HIPIP (high potential iron protein) › HIPIP (high potential iron protein) › HIPIP (high potential iron protein) › BssC_TutF 0.78 61.0 6.04e-01 83.0% 100.0%
5070110 374.1.1.0 ↗ few secondary structure elements › HIPIP (high potential iron protein) › HIPIP (high potential iron protein) › HIPIP (high potential iron protein) 0.76 61.0 6.09e-01 94.3% 83.6%
7997 374.1.1.1 ↗ few secondary structure elements › HIPIP (high potential iron protein) › HIPIP (high potential iron protein) › HIPIP (high potential iron protein) › HIPIP 0.73 63.0 5.54e-01 94.3% 72.0%
3921859 376.1.6.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › IBR domain 0.64 44.0 4.13e-01 71.7% 66.2%
3879032 372.1.1.0 ↗ a+b complex topology › RNase A-like › RNase A-like › RNase A-like 0.59 42.0 3.21e-01 75.5% 90.8%
4325343 3016.1.1.0 ↗ a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases 0.57 40.0 3.59e-01 77.4% 75.3%
3515696 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.57 43.0 3.29e-01 84.9% 82.2%
4536562 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.55 40.0 3.63e-01 81.1% 74.7%
3797511 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.54 43.0 3.64e-01 92.5% 72.6%
5010189 331.3.1.0 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like 0.52 44.0 3.35e-01 100.0% 95.7%
3223806 206.1.1.20 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › PK_Tyr_Ser-Thr 0.51 38.0 2.33e-01 86.8% 30.8%
1503651 4.1.1.42 ↗ beta barrels › SH3 › SH3 › SH3 › Agenet 0.50 40.0 3.55e-01 86.8% 78.8%