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MG450654.1__ATW62746.1__SCBWM1_gp62__00063

Bact-Vir

MG450654.1__ATW62746.1__SCBWM1_gp62__00063

Identity

Accession:
MG450654 ↗
Kingdom:
phage

Quality

86.8 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Aokuangvirus› Synechococcus_phage_S-CBWM1

TaxID: 2053653

Cluster

View cluster (5 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 1-82
PDB
Domain cluster: representative
CATH (14)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4e40A00 1.20.1260.80 Mainly Alpha › Up-down Bundle › Ferritin › 0.67 57.0 4.01e-01 92.7% 82.9%
2ijrA02 1.10.3530.10 Mainly Alpha › Orthogonal Bundle › Api92-like › Api92-like 0.62 46.0 3.67e-01 80.5% 48.0%
7wf8B01 1.10.167.10 Mainly Alpha › Orthogonal Bundle › Regulator of G-protein Signalling 4; domain 2 › Regulator of G-protein Signalling 4, domain 2 0.59 41.0 3.72e-01 74.4% 89.3%
6vudA01 1.10.132.20 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor 0.59 41.0 3.72e-01 72.0% 89.9%
3hl6A02 1.20.58.700 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.58 45.0 4.07e-01 84.1% 66.1%
3rrkA02 1.20.1460.20 Mainly Alpha › Up-down Bundle › subunit c (vma5p) of the yeast v-atpase, domain 2 › 0.57 42.0 3.46e-01 93.9% 41.9%
6tqpA01 1.10.437.10 Mainly Alpha › Orthogonal Bundle › Apoptosis Regulator Bcl-x › Blc2-like 0.56 43.0 3.74e-01 85.4% 90.4%
2prrA02 1.20.1290.10 Mainly Alpha › Up-down Bundle › AhpD-like › AhpD-like 0.55 40.0 3.39e-01 74.4% 82.7%
2hjmA01 1.20.120.460 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › protein pf1176 like 0.54 40.0 3.93e-01 80.5% 73.3%
1bgfA00 1.10.532.10 Mainly Alpha › Orthogonal Bundle › Transcription Factor, Stat-4 › STAT transcription factor, N-terminal domain 0.54 42.0 3.72e-01 85.4% 57.3%
6cgvM01 1.20.120.1500 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Pre-hexon-linking protein IIIa 0.54 44.0 3.77e-01 90.2% 88.8%
2w02B01 1.10.150.640 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › AcsD, thumb domain, helical bundle 0.52 37.0 3.89e-01 73.2% 89.2%
1tj7A01 1.10.275.10 Mainly Alpha › Orthogonal Bundle › Fumarase C; Chain B, domain 1 › Fumarase/aspartase (N-terminal domain) 0.51 37.0 3.48e-01 78.0% 77.1%
3mabA00 1.10.150.20 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 5' to 3' exonuclease, C-terminal subdomain 0.50 40.0 3.97e-01 85.4% 94.1%
ECOD (16)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3489261 196.1.1.0 ↗ alpha bundles › Regulator of G-protein signaling, RGS › Regulator of G-protein signaling, RGS › Regulator of G-protein signaling, RGS 0.69 51.0 4.40e-01 76.8% 93.6%
3615676 1189.1.1.0 ↗ alpha bundles › VSG (variant surface glycoprotein) N-terminal domain and haptoglobin-hemoglobin receptor › VSG (variant surface glycoprotein) N-terminal domain and haptoglobin-hemoglobin receptor › VSG (variant surface glycoprotein) N-terminal domain and haptoglobin-hemoglobin receptor 0.67 57.0 3.99e-01 91.5% 82.9%
4595958 632.22.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Cell division protein EzrA repeats › Cell division protein EzrA repeats 0.67 57.0 5.13e-01 91.5% 95.5%
3553221 632.22.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Cell division protein EzrA repeats › Cell division protein EzrA repeats 0.66 57.0 4.96e-01 92.7% 75.8%
4951139 192.29.1.0 ↗ alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) 0.64 51.0 4.77e-01 86.6% 70.0%
3485664 174.1.1.1 ↗ few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin 0.64 54.0 4.63e-01 92.7% 75.4%
2723199 3455.1.1.0 ↗ alpha arrays › WY-domain in RXLR effectors › WY-domain in RXLR effectors › WY-domain in RXLR effectors 0.62 47.0 4.18e-01 81.7% 72.7%
4825592 109.3.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat 0.61 54.0 4.30e-01 100.0% 67.4%
3960602 633.6.1.0 ↗ alpha bundles › Bromodomain-like › Acyl-CoA dehydrogenase C-terminal domain-like › Acyl-CoA dehydrogenase C-terminal domain-like 0.61 49.0 4.01e-01 87.8% 60.6%
3882597 4009.1.1.0 ↗ alpha bundles › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins 0.61 37.0 3.65e-01 78.0% 55.6%
3794203 101.11.1.0 ↗ alpha arrays › HTH › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 0.60 35.0 3.52e-01 81.7% 56.5%
5044517 3291.1.1.1 ↗ alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Snf7 0.58 46.0 3.73e-01 86.6% 76.9%
4136906 5069.1.3.1 ↗ alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Fumarate reductase respiratory complex transmembrane subunits › Sdh_cyt 0.56 51.0 4.42e-01 97.6% 95.0%
3353866 3291.1.1.0 ↗ alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related 0.55 44.0 3.60e-01 92.7% 61.2%
3269505 142.1.1.0 ↗ alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors 0.52 47.0 4.38e-01 98.8% 85.0%
4931319 2003.1.1.24 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › Shikimate_DH 0.51 35.0 2.52e-01 76.8% 23.2%
D2 high residues 94-174
PDB
Domain cluster: rep: CAKLQH020000005.1__CAH1078703.1__SAMEA5780036_01077__00062__D8-71