←Back to structures
MG450654.1__ATW62791.1__SCBWM1_gp107__00108
Bact-VirMG450654.1__ATW62791.1__SCBWM1_gp107__00108
Identity
- Accession:
- MG450654 ↗
- Kingdom:
- phage
Quality
84.0
mean pLDDT
Taxonomy
TaxID: 2053653
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 9-87
Domain cluster:
representative
CATH (28)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4l8iB00 | 1.10.132.20 | Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor | 0.79 | 57.0 | 5.04e-01 | 75.9% | 96.4% |
| 6f7hA00 | 1.20.1080.10 | Mainly Alpha › Up-down Bundle › Glycerol uptake facilitator protein › Glycerol uptake facilitator protein. | 0.73 | 56.0 | 3.92e-01 | 82.3% | 76.9% |
| 3vw4A01 | 1.10.340.50 | Mainly Alpha › Orthogonal Bundle › Endonuclease III; domain 1 › | 0.68 | 53.0 | 5.06e-01 | 83.5% | 81.5% |
| 2eyqA07 | 3.90.1150.50 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Transcription-repair-coupling factor, D7 domain | 0.67 | 58.0 | 4.70e-01 | 93.7% | 63.9% |
| 2jpnA00 | 1.20.1280.210 | Mainly Alpha › Up-down Bundle › Monooxygenase › Uncharacterised protein UvsW.1 | 0.66 | 51.0 | 5.11e-01 | 82.3% | 82.3% |
| 2pftA00 | 1.20.1280.170 | Mainly Alpha › Up-down Bundle › Monooxygenase › Exocyst complex component Exo70 | 0.66 | 50.0 | 3.05e-01 | 82.3% | 22.9% |
| 3ejbH02 | 1.10.630.10 | Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 | 0.65 | 52.0 | 3.64e-01 | 88.6% | 82.4% |
| 2vwaA00 | 1.20.58.1330 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Plasmodium falciparum UIS3 membrane protein | 0.65 | 46.0 | 4.35e-01 | 75.9% | 76.8% |
| 4a8eA01 | 1.10.150.130 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Tyrosine recombinase, N-terminal domain | 0.64 | 51.0 | 5.03e-01 | 88.6% | 86.2% |
| 1u6zA03 | 1.10.3210.10 | Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › Hypothetical protein af1432 | 0.64 | 53.0 | 4.39e-01 | 93.7% | 78.8% |
| 4dxkA01 | 3.30.390.10 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain | 0.64 | 54.0 | 4.64e-01 | 93.7% | 76.0% |
| 4zvaA00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.61 | 54.0 | 4.47e-01 | 100.0% | 67.8% |
| 2keyA00 | 1.10.150.130 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Tyrosine recombinase, N-terminal domain | 0.60 | 52.0 | 4.68e-01 | 98.7% | 75.9% |
| 2i2xB01 | 1.10.1240.10 | Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › Methionine synthase domain | 0.60 | 48.0 | 4.48e-01 | 100.0% | 70.0% |
| 3a9fA01 | 1.10.760.10 | Mainly Alpha › Orthogonal Bundle › Cytochrome Bc1 Complex; Chain D, domain 2 › Cytochrome c-like domain | 0.60 | 43.0 | 4.54e-01 | 75.9% | 98.5% |
| 2w9mA02 | 1.10.150.20 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 5' to 3' exonuclease, C-terminal subdomain | 0.60 | 45.0 | 4.74e-01 | 87.3% | 92.6% |
| 1bvp103 | 1.10.170.10 | Mainly Alpha › Orthogonal Bundle › Bluetongue Virus 10, subunit 1; domain 3 › Bluetongue Virus 10, subunit 1, domain 3 | 0.59 | 39.0 | 3.68e-01 | 91.1% | 55.2% |
| 3b34A03 | 1.10.390.10 | Mainly Alpha › Orthogonal Bundle › Neutral Protease; domain 2 › Neutral Protease Domain 2 | 0.59 | 44.0 | 3.54e-01 | 81.0% | 50.0% |
| 2blfB01 | 1.10.760.10 | Mainly Alpha › Orthogonal Bundle › Cytochrome Bc1 Complex; Chain D, domain 2 › Cytochrome c-like domain | 0.59 | 43.0 | 4.63e-01 | 78.5% | 100.0% |
| 2lhrA00 | 1.20.58.1270 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.57 | 42.0 | 4.31e-01 | 78.5% | 79.5% |
| 3lmfA00 | 1.20.1270.360 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › | 0.57 | 44.0 | 4.05e-01 | 84.8% | 97.2% |
| 2r6fA02 | 1.20.1580.10 | Mainly Alpha › Up-down Bundle › ABC transporter ATPase like fold › ABC transporter ATPase like domain | 0.56 | 44.0 | 3.66e-01 | 88.6% | 89.7% |
| 5yjlB01 | 3.30.460.30 | Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Glutamyl-tRNA reductase, N-terminal domain | 0.56 | 42.0 | 3.40e-01 | 82.3% | 98.8% |
| 7xpcA01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.56 | 49.0 | 3.28e-01 | 100.0% | 54.3% |
| 3w1oA00 | 3.40.1760.20 | Alpha Beta › 3-Layer(aba) Sandwich › Hypothetical protein yfbM fold › | 0.55 | 45.0 | 3.98e-01 | 91.1% | 93.0% |
| 2rkkA01 | 1.25.40.270 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Vacuolar protein sorting-associated protein vta1 | 0.54 | 45.0 | 3.67e-01 | 94.9% | 82.1% |
| 1exzB00 | 1.20.1250.10 | Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › | 0.53 | 44.0 | 3.69e-01 | 92.4% | 68.6% |
| 1irxA04 | 1.10.10.770 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › | 0.52 | 44.0 | 4.03e-01 | 96.2% | 91.7% |
ECOD (38)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3389963 | 1134.1.1.0 ↗ | alpha bundles › C-terminal helical domain of alanine-tRNA ligase › C-terminal helical domain of alanine-tRNA ligase › Eukaryotic C-Ala helical domain | 0.74 | 51.0 | 5.35e-01 | 70.9% | 97.1% |
| 3858558 | 4207.1.2.5 ↗ | alpha duplicates or obligate multimers › Mediator hinge subcomplex-like › Mediator hinge subcomplex-like › MED7 hinge region › TEX13 | 0.73 | 58.0 | 5.98e-01 | 86.1% | 100.0% |
| 3455613 | 4030.1.1.0 ↗ | alpha bundles › alpha-helical domain in subunits of heterodimeric actin filament capping protein Capz › alpha-helical domain in subunits of heterodimeric actin filament capping protein Capz › alpha-helical domain in subunits of heterodimeric actin filament capping protein Capz | 0.73 | 44.0 | 4.95e-01 | 79.7% | 80.0% |
| 5030095 | 192.4.1.0 ↗ | alpha bundles › Long alpha-hairpin › Ribosomal protein L29 (L29p) › Ribosomal protein L29 (L29p) | 0.70 | 54.0 | 5.51e-01 | 81.0% | 92.0% |
| 3456172 | 304.1.1.0 ↗ | a+b two layers › Alpha-beta plaits › GHMP Kinase, C-terminal domain › GHMP Kinase, C-terminal domain | 0.69 | 41.0 | 2.81e-01 | 98.7% | 17.7% |
| 4120292 | 101.11.1.1 ↗ | alpha arrays › HTH › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › PNPase | 0.68 | 53.0 | 5.30e-01 | 83.5% | 100.0% |
| 3486703 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.68 | 51.0 | 3.62e-01 | 79.7% | 48.9% |
| 4656715 | 101.11.1.1 ↗ | alpha arrays › HTH › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › PNPase | 0.67 | 55.0 | 5.22e-01 | 89.9% | 83.2% |
| 3338724 | 603.1.1.0 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins | 0.67 | 52.0 | 4.30e-01 | 82.3% | 68.6% |
| 3213246 | 109.3.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat | 0.66 | 59.0 | 4.39e-01 | 100.0% | 45.0% |
| 184670 | 6068.1.1.1 ↗ | alpha arrays › T4 Bacteriophage Helicase Uvsw.1 › T4 Bacteriophage Helicase Uvsw.1 › T4 Bacteriophage Helicase Uvsw.1 › UvsW-1 | 0.66 | 51.0 | 5.11e-01 | 82.3% | 82.3% |
| 5045956 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.64 | 48.0 | 4.87e-01 | 81.0% | 96.2% |
| 3652408 | 192.7.1.0 ↗ | alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm | 0.63 | 46.0 | 4.33e-01 | 75.9% | 76.8% |
| 4437443 | 604.12.1.9 ↗ | alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › ATG1-like_MIT2 | 0.63 | 45.0 | 4.29e-01 | 75.9% | 90.5% |
| 3605504 | 213.1.1.1 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 | 0.63 | 43.0 | 3.11e-01 | 70.9% | 80.3% |
| 5045348 | 604.34.1.0 ↗ | alpha bundles › Spectrin repeat-like › Helical bundle domain in arginine decarboxylase › Helical bundle domain in arginine decarboxylase | 0.63 | 50.0 | 4.95e-01 | 88.6% | 90.6% |
| 3488594 | 101.1.17.0 ↗ | alpha arrays › HTH › HTH › FF domain | 0.61 | 43.0 | 4.54e-01 | 73.4% | 98.6% |
| 3738680 | 109.4.1.601 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PLU-1 | 0.61 | 45.0 | 3.25e-01 | 78.5% | 33.8% |
| None | — | 0.61 | 47.0 | 3.24e-01 | 86.1% | 78.0% | |
| 3784243 | 109.4.1.1828 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_DOP1_M | 0.60 | 50.0 | 2.88e-01 | 92.4% | 17.4% |
| 3901327 | 604.6.1.0 ↗ | alpha bundles › Spectrin repeat-like › GAT-like domain › GAT-like domain | 0.60 | 42.0 | 3.70e-01 | 73.4% | 71.3% |
| 3639695 | 219.1.1.79 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Transglut_core2 | 0.60 | 43.0 | 3.14e-01 | 78.5% | 44.9% |
| 3681424 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.59 | 47.0 | 3.25e-01 | 87.3% | 80.7% |
| 3168021 | 604.12.1.2 ↗ | alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › Vta1 | 0.58 | 42.0 | 4.27e-01 | 79.7% | 92.5% |
| 3632492 | 109.4.1.736 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PHD | 0.58 | 42.0 | 3.22e-01 | 79.7% | 78.5% |
| 3459453 | 109.4.1.1257 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR_1, PPR_2 | 0.57 | 45.0 | 4.04e-01 | 84.8% | 65.5% |
| 4993658 | 604.1.1.0 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat | 0.57 | 42.0 | 3.80e-01 | 79.7% | 96.5% |
| 3260089 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.57 | 37.0 | 4.09e-01 | 72.2% | 88.3% |
| 3414610 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.57 | 50.0 | 3.02e-01 | 100.0% | 29.4% |
| 4023339 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.57 | 41.0 | 3.43e-01 | 78.5% | 72.7% |
| 3737926 | 133.1.1.0 ↗ | alpha bundles › DH domain-like › DBL homology domain (DH-domain) › DBL homology domain (DH-domain) | 0.56 | 48.0 | 3.66e-01 | 93.7% | 64.4% |
| 3198235 | 109.4.1.307 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Tho2 | 0.55 | 47.0 | 3.24e-01 | 94.9% | 53.8% |
| 4180990 | 604.12.1.0 ↗ | alpha bundles › Spectrin repeat-like › MIT domain › MIT domain | 0.55 | 45.0 | 4.52e-01 | 94.9% | 93.8% |
| 5083424 | 102.1.1.119 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › DUF4332 | 0.54 | 43.0 | 4.38e-01 | 91.1% | 94.7% |
| 4565278 | 109.4.1.109 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Sel1 | 0.54 | 40.0 | 2.35e-01 | 81.0% | 43.6% |
| 3718831 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.54 | 46.0 | 3.93e-01 | 100.0% | 67.1% |
| 3361577 | 109.4.1.601 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PLU-1 | 0.53 | 39.0 | 3.64e-01 | 78.5% | 88.0% |
| 3856583 | 604.12.1.2 ↗ | alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › Vta1 | 0.51 | 43.0 | 4.23e-01 | 98.7% | 88.9% |