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MG450654.1__ATW62801.1__SCBWM1_gp117__00118

Bact-Vir

MG450654.1__ATW62801.1__SCBWM1_gp117__00118

Identity

Accession:
MG450654 ↗
Kingdom:
phage

Quality

85.8 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 11-101
PDB
D2 medium residues 111-151
PDB
CATH (54)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3hshE00 3.40.1620.70 Alpha Beta › 3-Layer(aba) Sandwich › YefM-like fold › 0.77 67.0 6.11e-01 100.0% 74.5%
1yu0A01 2.10.10.30 Mainly Beta › Ribbon › Seminal Fluid Protein PDC-109 (Domain B) › 0.71 60.0 5.64e-01 100.0% 78.4%
1qyaB01 3.10.310.10 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 0.70 57.0 4.03e-01 100.0% 44.4%
1ob8A00 3.40.1350.10 Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › 0.69 56.0 4.18e-01 100.0% 52.9%
1wquA00 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.69 56.0 4.24e-01 100.0% 39.5%
3ifvC00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.69 47.0 2.89e-01 70.7% 12.1%
3gg8C03 2.40.33.10 Mainly Beta › Beta Barrel › M1 Pyruvate Kinase; Domain 3 › PK beta-barrel domain-like 0.68 56.0 4.34e-01 95.1% 78.4%
6mzoA01 3.40.50.11970 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.68 55.0 4.07e-01 100.0% 49.2%
7r6yA01 2.40.33.10 Mainly Beta › Beta Barrel › M1 Pyruvate Kinase; Domain 3 › PK beta-barrel domain-like 0.66 54.0 4.29e-01 95.1% 87.0%
7oo1A01 2.40.33.10 Mainly Beta › Beta Barrel › M1 Pyruvate Kinase; Domain 3 › PK beta-barrel domain-like 0.66 54.0 4.40e-01 90.2% 53.2%
2ci8A01 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.64 51.0 4.81e-01 100.0% 85.7%
3qtgA02 2.40.33.10 Mainly Beta › Beta Barrel › M1 Pyruvate Kinase; Domain 3 › PK beta-barrel domain-like 0.64 52.0 4.10e-01 95.1% 75.5%
2e4qA00 2.102.10.10 Mainly Beta › 3-layer Sandwich › Rieske Iron-sulfur Protein › Rieske [2Fe-2S] iron-sulphur domain 0.64 49.0 3.74e-01 90.2% 35.2%
2oq1A03 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.64 51.0 4.06e-01 100.0% 49.0%
4l8jA01 2.40.420.20 Mainly Beta › Beta Barrel › conserved putative lor/sdh protein from methanococcus maripaludis s2 fold › 0.64 46.0 3.52e-01 78.0% 53.1%
2eobA01 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.64 51.0 3.90e-01 100.0% 42.5%
1jg1A00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.63 50.0 3.32e-01 100.0% 23.3%
1vbfA00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.63 49.0 3.27e-01 100.0% 21.9%
2g16B00 2.40.155.10 Mainly Beta › Beta Barrel › Green Fluorescent Protein › Green fluorescent protein 0.63 47.0 3.23e-01 85.4% 35.0%
1u3eM01 3.90.75.20 Alpha Beta › Alpha-Beta Complex › Homing Intron 3 (I-Ppo) Encoded Endonuclease; Chain A › 0.63 42.0 3.16e-01 70.7% 28.3%
3gceA00 2.102.10.10 Mainly Beta › 3-layer Sandwich › Rieske Iron-sulfur Protein › Rieske [2Fe-2S] iron-sulphur domain 0.63 48.0 3.75e-01 92.7% 37.5%
3gqbA01 2.40.30.20 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.62 51.0 4.41e-01 100.0% 73.2%
1k8kC00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.62 51.0 3.05e-01 100.0% 22.3%
3igmA00 1.20.5.2050 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.61 43.0 4.00e-01 100.0% 57.1%
1tpmA00 2.10.70.10 Mainly Beta › Ribbon › Complement Module; domain 1 › Complement Module, domain 1 0.60 44.0 4.30e-01 87.8% 76.0%
5llwA01 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.60 45.0 3.66e-01 90.2% 46.7%
2qlvB02 2.20.25.290 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.60 42.0 4.33e-01 78.0% 89.5%
4kh9B02 2.60.40.1930 Mainly Beta › Sandwich › Immunoglobulin-like › Macroglobulin (MG2) domain 0.60 41.0 3.04e-01 73.2% 57.5%
3wirA03 2.60.420.10 Mainly Beta › Sandwich › Maltose phosphorylase, domain 3 › Maltose phosphorylase, domain 3 0.59 48.0 4.22e-01 100.0% 75.4%
1wibA00 3.30.1550.10 Alpha Beta › 2-Layer Sandwich › Ribosomal protein L11, N-terminal domain › Ribosomal protein L11/L12, N-terminal domain 0.58 39.0 3.20e-01 70.7% 70.7%
3jtzA00 3.30.160.390 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Integrase, DNA-binding domain 0.58 47.0 3.88e-01 95.1% 49.4%
1t6aA02 3.30.310.120 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Rbstp2229 like protein 0.58 40.0 3.30e-01 73.2% 55.1%
2p25A01 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.58 41.0 3.04e-01 78.0% 50.4%
3nm6B00 3.40.50.1580 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nucleoside phosphorylase domain 0.58 44.0 2.84e-01 87.8% 61.1%
2de6A02 2.20.25.680 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.58 44.0 4.14e-01 92.7% 65.5%
2cfuA03 3.30.1050.10 Alpha Beta › 2-Layer Sandwich › Nonspecific Lipid-transfer Protein; Chain A › SCP2 sterol-binding domain 0.57 44.0 3.22e-01 90.2% 38.8%
3j7yD01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.57 46.0 3.52e-01 95.1% 49.1%
4nurA03 3.30.1050.10 Alpha Beta › 2-Layer Sandwich › Nonspecific Lipid-transfer Protein; Chain A › SCP2 sterol-binding domain 0.56 45.0 3.26e-01 90.2% 37.4%
6j8yC00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.56 38.0 2.39e-01 73.2% 11.4%
4g2sA00 2.60.200.20 Mainly Beta › Sandwich › Tumour Suppressor Smad4 › 0.56 45.0 3.50e-01 100.0% 67.0%
2qrdB01 2.20.25.290 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.55 38.0 3.89e-01 70.7% 86.5%
1txqA00 2.30.30.190 Mainly Beta › Roll › SH3 type barrels. › CAP Gly-rich-like domain 0.55 45.0 3.77e-01 100.0% 52.7%
4lgvD02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.55 46.0 2.86e-01 100.0% 67.2%
1a73A00 3.90.75.10 Alpha Beta › Alpha-Beta Complex › Homing Intron 3 (I-Ppo) Encoded Endonuclease; Chain A › Homing Intron 3 (I-ppo) Encoded Endonuclease; Chain A 0.55 37.0 2.58e-01 97.6% 18.5%
4bq6F00 3.40.1000.10 Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › Mog1/PsbP, alpha/beta/alpha sandwich 0.55 42.0 3.05e-01 95.1% 48.3%
2ra6C00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.55 45.0 3.23e-01 100.0% 39.2%
2ddmB00 3.40.1190.20 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase 0.54 40.0 2.61e-01 100.0% 22.1%
2xzhA00 2.130.10.110 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Clathrin heavy-chain terminal domain 0.53 44.0 2.66e-01 100.0% 27.7%
5bukB00 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.52 45.0 2.61e-01 100.0% 38.5%
4gafB02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 36.0 2.90e-01 80.5% 57.5%
3sluA02 3.10.450.350 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.51 42.0 3.07e-01 100.0% 67.2%
6yiiA01 3.30.70.1230 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Nucleotide cyclase, GGDEF domain 0.51 40.0 2.64e-01 100.0% 67.1%
1jpyX00 2.10.90.10 Mainly Beta › Ribbon › Cystine Knot Cytokines, subunit B › Cystine-knot cytokines 0.51 42.0 3.06e-01 95.1% 72.6%
2f5tX02 2.30.30.690 Mainly Beta › Roll › SH3 type barrels. › 0.51 38.0 3.26e-01 100.0% 67.8%
ECOD (65)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3989853 77.1.1.13 beta meanders › open-sided beta-meander › Outer surface protein › Outer surface protein › CFSR 0.87 71.0 4.11e-01 100.0% 11.4%
3987740 3761.1.1.0 beta duplicates or obligate multimers › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related 0.82 67.0 6.79e-01 100.0% 92.5%
3498702 3761.1.1.2 beta duplicates or obligate multimers › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related › Collagen_trimer 0.81 70.0 6.86e-01 100.0% 95.6%
4955635 375.1.1.63 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › LysW-like_globular 0.74 59.0 5.14e-01 92.7% 57.8%
5044376 2484.1.1.34 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DNA_pol_B_exo1 0.74 48.0 2.82e-01 70.7% 8.6%
4932491 221.1.2.7 a+b two layers › beta-Grasp › Ubiquitin-related › Alpha-L RNA-binding motif › RS4NT 0.72 56.0 4.08e-01 85.4% 63.6%
4928895 79.1.1.0 beta duplicates or obligate multimers › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain 0.72 59.0 3.67e-01 100.0% 16.0%
3906671 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.71 50.0 5.07e-01 75.6% 87.5%
3611201 884.1.1.0 a+b two layers › Hypothetical protein YjiA, C-terminal domain › Hypothetical protein YjiA, C-terminal domain › Hypothetical protein YjiA, C-terminal domain 0.71 57.0 4.43e-01 100.0% 56.2%
4927153 375.1.1.63 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › LysW-like_globular 0.70 56.0 5.19e-01 92.7% 69.1%
3890372 214.1.1.1 a+b two layers › SH2 › SH2 › SH2 › SH2 0.70 58.0 4.40e-01 100.0% 45.5%
4994059 2492.1.1.2 a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › JAB 0.70 58.0 4.14e-01 100.0% 41.5%
3480221 391.1.1.0 few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › Fibronectin type I module 0.70 55.0 4.74e-01 87.8% 55.4%
4991056 375.1.1.63 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › LysW-like_globular 0.69 54.0 5.06e-01 92.7% 69.1%
5069323 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.69 54.0 5.16e-01 90.2% 74.0%
5051090 1.1.7.17 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.69 58.0 4.74e-01 97.6% 65.0%
4523246 391.1.2.3 few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › VWC domain-related › SVWC 0.69 54.0 4.67e-01 95.1% 55.4%
3768845 4294.1.1.0 few secondary structure elements › Trm112p-like › Trm112p-like › Trm112p-like 0.69 51.0 3.90e-01 85.4% 33.3%
3214385 391.1.1.7 few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › Fibronectin type I module › Fn1_2 0.68 53.0 4.47e-01 95.1% 51.4%
3195787 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.68 58.0 3.50e-01 100.0% 32.3%
4044986 391.1.2.3 few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › VWC domain-related › SVWC 0.67 52.0 4.33e-01 90.2% 48.0%
3940997 223.1.1.0 a+b three layers › Profilin-like › sensor domains › sensor domains 0.67 53.0 3.71e-01 87.8% 37.0%
3905730 214.1.1.1 a+b two layers › SH2 › SH2 › SH2 › SH2 0.67 55.0 4.10e-01 100.0% 39.1%
3999532 391.1.1.7 few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › Fibronectin type I module › Fn1_2 0.67 52.0 5.07e-01 92.7% 80.0%
3938083 214.1.1.1 a+b two layers › SH2 › SH2 › SH2 › SH2 0.67 55.0 4.34e-01 100.0% 48.4%
3623943 391.1.1.7 few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › Fibronectin type I module › Fn1_2 0.66 52.0 4.28e-01 87.8% 48.0%
4027686 252.2.1.0 a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like 0.66 44.0 4.09e-01 100.0% 52.7%
3623273 101.1.2.712 alpha arrays › HTH › HTH › winged helix domain › FNIP_C 0.66 54.0 3.37e-01 100.0% 36.4%
5028514 375.1.1.63 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › LysW-like_globular 0.66 52.0 4.68e-01 92.7% 63.3%
3477642 214.1.1.1 a+b two layers › SH2 › SH2 › SH2 › SH2 0.66 53.0 3.97e-01 100.0% 40.0%
3518947 214.1.1.10 a+b two layers › SH2 › SH2 › SH2 › DUF7145 0.65 52.0 3.92e-01 100.0% 37.5%
3871990 391.1.2.1 few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › VWC domain-related › VWC 0.65 46.0 4.25e-01 90.2% 58.2%
3558557 330.16.1.0 a+b two layers › dsRBD-like › ODA16 N-terminal domain › ODA16 N-terminal domain 0.65 43.0 3.59e-01 70.7% 37.3%
3609816 66.1.1.3 beta sandwiches › ISP domain › ISP domain › ISP domain › Sol_Rieske_ferrdox 0.64 50.0 3.48e-01 92.7% 24.8%
3854670 214.1.1.1 a+b two layers › SH2 › SH2 › SH2 › SH2 0.64 52.0 3.71e-01 100.0% 32.9%
3601509 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.64 52.0 3.07e-01 100.0% 22.6%
3580489 391.1.2.9 few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › VWC domain-related › Fn1_2 0.64 54.0 5.24e-01 95.1% 91.1%
1868024 66.1.1.1 beta sandwiches › ISP domain › ISP domain › ISP domain › Rieske 0.64 49.0 4.94e-01 92.7% 92.7%
3478110 5.1.4.271 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, PF30361 0.63 52.0 3.08e-01 100.0% 86.3%
136402 66.1.1.0 beta sandwiches › ISP domain › ISP domain › ISP domain 0.63 48.0 4.80e-01 92.7% 92.9%
4027687 330.3.1.0 a+b two layers › dsRBD-like › Peptidyl-tRNA hydrolase domain-like › Peptidyl-tRNA hydrolase domain-like 0.62 42.0 3.90e-01 100.0% 54.5%
3090442 4294.1.1.1 few secondary structure elements › Trm112p-like › Trm112p-like › Trm112p-like › Rieske 0.61 47.0 3.61e-01 92.7% 35.5%
5001760 66.1.1.1 beta sandwiches › ISP domain › ISP domain › ISP domain › Rieske 0.61 47.0 3.73e-01 92.7% 38.0%
1622844 66.1.1.0 beta sandwiches › ISP domain › ISP domain › ISP domain 0.61 47.0 4.24e-01 92.7% 60.3%
3482445 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.59 48.0 2.84e-01 100.0% 18.5%
1007 66.1.1.1 beta sandwiches › ISP domain › ISP domain › ISP domain › Rieske 0.59 45.0 4.56e-01 92.7% 92.7%
4030628 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.59 46.0 2.67e-01 100.0% 8.0%
5057701 2.1.1.15 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.58 46.0 3.44e-01 100.0% 76.3%
5051933 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.58 46.0 3.11e-01 92.7% 30.0%
3932713 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.58 44.0 2.73e-01 100.0% 91.9%
4029439 252.2.1.0 a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like 0.57 41.0 3.52e-01 97.6% 46.4%
4942967 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.57 44.0 3.36e-01 100.0% 77.7%
3984944 213.2.1.0 a+b three layers › Nat/Ivy › Inhibitor of vertebrate lysozyme, Ivy › Inhibitor of vertebrate lysozyme, Ivy 0.57 38.0 3.21e-01 70.7% 41.2%
3720000 330.16.1.0 a+b two layers › dsRBD-like › ODA16 N-terminal domain › ODA16 N-terminal domain 0.57 38.0 3.29e-01 70.7% 40.0%
5021659 2.1.1.15 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.57 49.0 3.85e-01 100.0% 92.2%
4861411 5.1.4.58 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › DUF5074 0.56 46.0 2.81e-01 100.0% 23.2%
3231088 391.1.1.0 few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › Fibronectin type I module 0.56 41.0 4.22e-01 90.2% 90.0%
3828112 2003.1.2.15 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_3 0.56 40.0 2.39e-01 100.0% 37.2%
1699894 304.48.2.2 a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › 'palm' domain in birnaviruse RNA-dependent RNA polymerase › Permu_RdRp_palm 0.55 42.0 2.42e-01 90.2% 38.7%
3212894 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.55 45.0 2.81e-01 100.0% 19.2%
4991866 2005.1.1.10 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › ETF 0.55 46.0 2.91e-01 97.6% 57.7%
4983589 2005.1.1.10 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › ETF 0.55 48.0 3.04e-01 100.0% 63.0%
4936358 268.1.1.1 a+b two layers › Sterol carrier protein-like › Sterol carrier protein, SCP-related › Sterol carrier protein, SCP-related › SCP2 0.54 39.0 2.87e-01 78.0% 27.7%
3468885 252.2.1.1 a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like › AP2 0.54 39.0 3.31e-01 100.0% 43.8%
4028013 252.2.1.1 a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like › AP2 0.50 38.0 3.29e-01 97.6% 49.3%