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MG518519.1__ATW69359.1__SEA_MANUEL_65__00045

Bact-Vir

MG518519.1__ATW69359.1__SEA_MANUEL_65__00045

Identity

Accession:
MG518519 ↗
Kingdom:
phage

Quality

79.9 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Manuelvirus› Streptomyces_phage_Manuel

TaxID: 2053812

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 7-61
PDB
Domain cluster: rep: MW584183.1__QST89833.1__PROPHIGD53-3_30__00029__DFULL
CATH (27)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4b6dB00 3.30.60.20 Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › 0.84 65.0 6.50e-01 90.9% 80.7%
1v9xA00 3.30.1740.10 Alpha Beta › 2-Layer Sandwich › first zn-finger domain of poly(adp-ribose) polymerase-1 › Zinc finger, PARP-type 0.81 62.0 4.80e-01 81.8% 80.7%
7r71A01 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.71 58.0 5.55e-01 90.9% 90.6%
1uw0A01 3.30.1740.10 Alpha Beta › 2-Layer Sandwich › first zn-finger domain of poly(adp-ribose) polymerase-1 › Zinc finger, PARP-type 0.71 55.0 4.60e-01 85.5% 63.5%
4v3lC00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.71 57.0 5.36e-01 90.9% 87.0%
4hi8B00 2.10.110.10 Mainly Beta › Ribbon › Cysteine Rich Protein › Cysteine Rich Protein 0.69 63.0 5.74e-01 100.0% 98.6%
2darA01 2.10.110.10 Mainly Beta › Ribbon › Cysteine Rich Protein › Cysteine Rich Protein 0.68 49.0 4.55e-01 78.2% 100.0%
1rfhA01 3.30.60.20 Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › 0.68 48.0 5.29e-01 74.5% 100.0%
7yuiB01 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.66 52.0 4.45e-01 87.3% 68.2%
2zetC00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.65 45.0 3.34e-01 72.7% 29.1%
5axmB00 3.30.70.3000 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › tRNA(His) guanylyltransferase (Thg1) 0.65 41.0 2.66e-01 100.0% 15.1%
1wtuA00 4.10.520.10 Few Secondary Structures › Irregular › HU Protein; Chain A › IHF-like DNA-binding proteins 0.64 38.0 3.16e-01 100.0% 32.3%
2l0bA00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.64 53.0 4.62e-01 98.2% 72.5%
3pe0A03 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.62 42.0 4.04e-01 70.9% 60.9%
5ir2A00 3.50.30.40 Alpha Beta › 3-Layer(bba) Sandwich › Glucose Oxidase; domain 1 › Ribonuclease E inhibitor RraA/RraA-like 0.60 52.0 3.49e-01 100.0% 67.6%
6r8gB02 3.90.110.10 Alpha Beta › Alpha-Beta Complex › L-2-Hydroxyisocaproate Dehydrogenase; Chain A, domain 2 › Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal 0.58 45.0 3.18e-01 83.6% 81.8%
7febA03 3.40.50.12790 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › FHIPEP family, domain 4 0.57 41.0 3.44e-01 80.0% 44.6%
2ds5A00 6.20.220.10 Special › Other non-globular › Erythroid Transcription Factor GATA-1; Chain A › ClpX chaperone, C4-type zinc finger domain 0.57 38.0 4.14e-01 70.9% 90.7%
4q6jB00 3.20.20.450 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › EAL domain 0.56 46.0 2.98e-01 90.9% 32.4%
2v25A01 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.55 44.0 3.38e-01 89.1% 44.6%
3oqgA00 3.40.1440.50 Alpha Beta › 3-Layer(aba) Sandwich › GIY-YIG endonuclease › 0.55 42.0 2.98e-01 85.5% 58.5%
3euoA02 3.40.47.10 Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase 0.54 40.0 2.92e-01 80.0% 29.3%
3kk7A01 3.30.420.400 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › 0.53 46.0 3.73e-01 100.0% 62.4%
2g3mA03 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.52 37.0 3.43e-01 78.2% 66.7%
2akkA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.51 37.0 3.41e-01 78.2% 63.5%
4lxjA01 1.10.630.10 Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 0.51 44.0 2.63e-01 98.2% 37.2%
7oslA02 3.40.50.12790 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › FHIPEP family, domain 4 0.51 36.0 2.98e-01 80.0% 40.0%
ECOD (79)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3923898 377.1.2.0 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › PARP-type zinc finger 0.90 68.0 5.90e-01 85.5% 55.0%
3889754 376.1.2.1 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain › C1_1 0.86 68.0 6.58e-01 90.9% 76.7%
3549345 376.1.2.1 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain › C1_1 0.84 66.0 6.44e-01 90.9% 76.7%
4936660 376.1.2.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain 0.84 64.0 6.45e-01 80.0% 96.4%
3933161 376.1.2.1 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain › C1_1 0.84 69.0 6.94e-01 96.4% 87.3%
3541586 376.1.2.1 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain › C1_1 0.84 67.0 5.96e-01 90.9% 62.7%
3513068 376.1.2.1 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain › C1_1 0.84 67.0 6.31e-01 90.9% 72.3%
3865409 376.1.2.1 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain › C1_1 0.83 65.0 6.32e-01 89.1% 76.7%
4002849 376.1.2.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain 0.83 56.0 6.17e-01 70.9% 93.3%
5034811 376.1.2.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain 0.83 66.0 6.46e-01 85.5% 93.3%
3459484 376.1.2.2 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain › C1_2 0.83 58.0 5.81e-01 72.7% 72.7%
3487738 376.1.2.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain 0.83 65.0 6.78e-01 90.9% 92.0%
3898995 376.1.2.1 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain › C1_1 0.81 66.0 6.22e-01 90.9% 73.8%
3825317 376.1.2.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain 0.81 52.0 5.50e-01 70.9% 74.0%
5069246 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.80 64.0 6.74e-01 85.5% 98.0%
3597664 376.1.2.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain 0.79 56.0 6.10e-01 74.5% 91.1%
3804854 376.1.2.2 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain › C1_2 0.79 59.0 4.56e-01 81.8% 38.3%
3695063 376.1.2.2 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain › C1_2 0.77 59.0 5.28e-01 90.9% 60.0%
3271441 376.1.2.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain 0.77 57.0 5.79e-01 80.0% 87.3%
3829244 376.1.2.2 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain › C1_2 0.77 52.0 4.93e-01 74.5% 60.0%
3440301 376.1.1.21 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_2 0.76 63.0 5.80e-01 90.9% 80.0%
3830987 376.1.2.2 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain › C1_2 0.76 52.0 4.96e-01 74.5% 61.5%
3804128 376.1.2.2 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain › C1_2 0.75 55.0 4.29e-01 76.4% 40.0%
3816107 376.1.2.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain 0.75 53.0 5.37e-01 74.5% 85.5%
3817698 376.1.3.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger 0.75 54.0 4.64e-01 81.8% 49.4%
3808141 376.1.2.2 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain › C1_2 0.75 53.0 4.16e-01 74.5% 39.1%
4990542 377.1.1.128 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › DUF2175 0.75 49.0 5.27e-01 70.9% 82.2%
3804146 376.1.2.2 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain › C1_2 0.74 50.0 5.49e-01 74.5% 86.7%
3827797 376.1.3.70 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › C1_2 0.74 50.0 5.28e-01 74.5% 78.0%
3581076 376.1.2.17 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain › LIM+PET 0.74 66.0 4.79e-01 100.0% 49.7%
3445801 376.1.2.2 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain › C1_2 0.74 57.0 5.56e-01 81.8% 76.7%
3586741 376.1.2.1 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain › C1_1 0.74 67.0 6.30e-01 98.2% 83.1%
3828760 376.1.2.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain 0.74 50.0 5.46e-01 74.5% 86.7%
3394414 376.1.2.17 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain › LIM+PET 0.74 67.0 4.83e-01 100.0% 48.6%
3309791 376.1.2.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain 0.74 52.0 5.59e-01 74.5% 95.6%
3908093 377.9.1.8 ↗ few secondary structure elements › Glucocorticoid receptor-like › HIT/MYND zinc finger-like › HIT/MYND zinc finger-like › zf-FCS 0.74 55.0 5.99e-01 81.8% 97.8%
3831912 376.1.2.2 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain › C1_2 0.73 55.0 4.16e-01 80.0% 38.4%
3827345 376.1.2.2 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain › C1_2 0.73 52.0 3.99e-01 74.5% 37.5%
5007944 377.1.1.126 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › Arc_trans_TRASH 0.73 51.0 5.74e-01 72.7% 100.0%
3628466 376.1.2.1 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain › C1_1 0.73 55.0 5.58e-01 96.4% 81.8%
3990333 376.1.2.1 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain › C1_1 0.73 64.0 5.76e-01 96.4% 74.7%
3677216 376.1.1.40 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_11 0.72 54.0 5.25e-01 80.0% 80.0%
5011221 377.1.1.126 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › Arc_trans_TRASH 0.72 49.0 5.50e-01 70.9% 100.0%
3203266 376.1.2.26 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain › PF28755 0.72 51.0 5.46e-01 80.0% 91.1%
3633930 376.1.2.26 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain › PF28755 0.72 49.0 4.23e-01 74.5% 45.9%
3425799 376.1.1.21 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_2 0.72 58.0 5.28e-01 90.9% 88.0%
4944275 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.72 59.0 5.46e-01 92.7% 82.9%
3639307 375.1.1.275 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › PF28755 0.71 48.0 4.29e-01 74.5% 48.8%
3828931 376.1.2.2 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain › C1_2 0.71 50.0 4.78e-01 76.4% 63.1%
3173007 377.1.1.0 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.71 48.0 4.43e-01 70.9% 74.3%
3441017 376.1.2.2 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain › C1_2 0.70 54.0 4.93e-01 81.8% 65.7%
4011230 375.4.1.0 ↗ few secondary structure elements › Rubredoxin-like › Nucleolar RNA-binding protein Nop10-like › Nucleolar RNA-binding protein Nop10-like 0.70 51.0 5.29e-01 85.5% 86.0%
3546896 376.1.1.21 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_2 0.70 60.0 5.00e-01 96.4% 86.3%
3684414 376.1.1.21 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_2 0.70 56.0 5.01e-01 90.9% 90.0%
3805304 376.1.2.43 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain › PHD 0.70 52.0 4.38e-01 87.3% 48.9%
3804245 376.1.2.2 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain › C1_2 0.69 54.0 4.12e-01 85.5% 42.4%
3295435 376.1.1.21 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_2 0.69 58.0 5.31e-01 96.4% 89.3%
3346269 376.1.1.21 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_2 0.69 57.0 4.86e-01 92.7% 68.9%
3380774 376.1.1.21 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_2 0.69 53.0 5.13e-01 85.5% 84.1%
3704076 376.1.1.21 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_2 0.68 55.0 4.65e-01 90.9% 55.8%
4926891 377.1.1.126 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › Arc_trans_TRASH 0.68 50.0 5.34e-01 80.0% 100.0%
3907976 377.9.1.8 ↗ few secondary structure elements › Glucocorticoid receptor-like › HIT/MYND zinc finger-like › HIT/MYND zinc finger-like › zf-FCS 0.68 51.0 5.49e-01 83.6% 100.0%
3299628 376.1.2.2 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain › C1_2 0.68 51.0 4.57e-01 80.0% 58.7%
3919489 377.1.1.0 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.68 47.0 5.23e-01 76.4% 100.0%
3415118 377.1.1.0 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.67 48.0 5.02e-01 78.2% 86.0%
3317581 376.1.2.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain 0.66 52.0 4.98e-01 87.3% 73.8%
4378478 376.1.2.1 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain › C1_1 0.66 49.0 4.80e-01 85.5% 75.0%
3907480 376.1.1.1 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4 0.64 52.0 4.43e-01 90.9% 68.9%
3900352 376.1.1.21 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_2 0.63 51.0 4.34e-01 90.9% 65.3%
4952760 2487.1.1.8 ↗ a/b three-layered sandwiches › "The ""swivelling"" beta/beta/alpha domains" › "The ""swivelling"" beta/beta/alpha domain" › "The ""swivelling"" beta/beta/alpha domain" › RraA-like 0.61 51.0 3.58e-01 96.4% 74.2%
3433304 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.61 50.0 4.07e-01 90.9% 59.0%
3715795 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.61 49.0 4.03e-01 90.9% 60.0%
3657469 376.1.1.1 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4 0.60 48.0 4.04e-01 90.9% 62.0%
4600912 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.57 39.0 3.00e-01 72.7% 71.5%
4670436 375.1.1.284 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › PF27208 0.55 37.0 4.09e-01 81.8% 100.0%
3614906 4.26.1.8 ↗ beta barrels › SH3 › Chromatin protein Cren7 › Chromatin protein Cren7 › Saf4_Yju2 0.54 39.0 3.67e-01 78.2% 75.7%
4665951 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.53 36.0 2.84e-01 72.7% 73.6%
3501569 1.1.7.50 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › EF-G_D2 0.52 37.0 2.95e-01 78.2% 81.6%
3216660 207.1.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.50 39.0 2.53e-01 87.3% 17.9%