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MG518519.1__ATW69375.1__SEA_MANUEL_81__00061

Bact-Vir

MG518519.1__ATW69375.1__SEA_MANUEL_81__00061

Identity

Accession:
MG518519 ↗
Kingdom:
phage

Quality

87.5 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-85
PDB
Domain cluster: representative
CATH (5)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2nnwA02 1.10.287.4070 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.53 42.0 3.67e-01 86.6% 74.8%
1ic8A02 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.51 39.0 4.06e-01 97.6% 93.2%
2mqaA00 1.10.274.60 Mainly Alpha › Orthogonal Bundle › Enzyme I; Chain A, domain 2 › Spidroin, repetitive domain 0.50 40.0 3.54e-01 92.7% 58.4%
6z4xA01 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.50 35.0 2.94e-01 74.4% 49.0%
1ivhA03 1.20.140.10 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 0.50 40.0 3.42e-01 89.0% 80.1%
D2 high residues 96-167
PDB
Domain cluster: representative
CATH (30)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3oyyA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.66 48.0 5.03e-01 100.0% 84.8%
1uebA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.65 46.0 4.80e-01 100.0% 84.1%
6s8zA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.65 45.0 4.76e-01 100.0% 85.5%
1ut7B01 2.170.150.80 Mainly Beta › Beta Complex › Metal Binding Protein, Guanine Nucleotide Exchange Factor; Chain A › NAC domain 0.63 50.0 4.15e-01 91.7% 49.6%
5aj3E01 3.30.230.10 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › 0.58 49.0 4.79e-01 95.8% 88.9%
2qkdA01 2.20.25.420 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › ZPR1, zinc finger domain 0.57 35.0 3.97e-01 81.9% 91.7%
1pfsA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.57 48.0 4.73e-01 93.1% 98.7%
3n54B01 6.20.190.10 Special › Other non-globular › Nuclear Transport Factor 2; Chain: A, › Nutrient germinant receptor protein C, domain 1 0.55 35.0 3.74e-01 76.4% 75.4%
4ikbA00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.55 45.0 3.69e-01 88.9% 72.1%
1fmbA00 2.40.70.10 Mainly Beta › Beta Barrel › Cathepsin D, subunit A; domain 1 › Acid Proteases 0.54 33.0 3.02e-01 84.7% 42.3%
2gtlN02 2.40.128.620 Mainly Beta › Beta Barrel › Lipocalin › 0.54 45.0 3.58e-01 100.0% 68.8%
3pijA01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.54 46.0 2.92e-01 94.4% 25.9%
1vclA01 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.53 40.0 3.28e-01 83.3% 65.8%
1tzzB01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.53 42.0 3.61e-01 87.5% 72.3%
5bkaE01 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.53 40.0 3.40e-01 84.7% 84.8%
3cu3A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.53 39.0 3.14e-01 83.3% 66.0%
3nv0B00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.52 40.0 3.33e-01 84.7% 77.2%
7z0sE01 3.30.460.80 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › NADH:ubiquinone oxidoreductase Nqo5 subunit 0.52 42.0 3.56e-01 98.6% 52.9%
4dduA07 2.60.510.20 Mainly Beta › Sandwich › EV matrix protein fold › 0.52 44.0 3.90e-01 94.4% 76.6%
2bn4B03 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.52 42.0 3.38e-01 94.4% 92.4%
2iw3A05 2.40.50.990 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.51 40.0 3.58e-01 88.9% 58.7%
4ffuB00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.51 39.0 3.15e-01 83.3% 87.3%
3gzrB00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.51 39.0 3.15e-01 83.3% 71.6%
3f6gA02 3.30.160.340 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.51 37.0 3.91e-01 91.7% 93.7%
1f9cA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.51 38.0 3.26e-01 81.9% 71.3%
2daxA01 3.10.110.10 Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme 0.50 39.0 3.13e-01 81.9% 46.8%
2cc3A00 3.10.450.230 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › VirB8 protein 0.50 38.0 3.09e-01 83.3% 63.2%
1ar0A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.50 39.0 3.27e-01 84.7% 82.4%
1idpA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.50 38.0 3.10e-01 84.7% 83.0%
2k54A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.50 39.0 3.27e-01 83.3% 70.7%
ECOD (46)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4147812 4.6.1.6 beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain › PRC_RimM 0.75 66.0 6.09e-01 94.4% 87.8%
3599172 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.69 49.0 5.12e-01 100.0% 83.1%
5032255 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.69 52.0 5.33e-01 94.4% 84.3%
3608236 4.1.1.57 beta barrels › SH3 › SH3 › SH3 › EFP_N 0.69 48.0 5.01e-01 100.0% 81.5%
3599176 219.1.1.0 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.68 62.0 4.00e-01 100.0% 30.2%
3828614 4.1.1.158 beta barrels › SH3 › SH3 › SH3 › DUF3444 0.67 62.0 5.29e-01 100.0% 75.5%
3948467 4.1.1.57 beta barrels › SH3 › SH3 › SH3 › EFP_N 0.66 47.0 4.89e-01 100.0% 84.6%
4077367 4.1.1.57 beta barrels › SH3 › SH3 › SH3 › EFP_N 0.65 48.0 5.05e-01 100.0% 89.2%
3721700 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.65 56.0 4.41e-01 100.0% 60.0%
3564235 277.1.1.1 a+b two layers › PX domain › PX domain › PX domain › PX 0.64 52.0 4.33e-01 88.9% 79.2%
3988067 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.62 45.0 4.31e-01 90.3% 65.9%
3900823 2007.2.3.1 a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase 0.60 41.0 2.70e-01 81.9% 16.5%
4992338 1.1.1.18 beta barrels › cradle loop barrel › RIFT-related › acid protease › Asp_protease_2 0.60 39.0 3.45e-01 81.9% 44.8%
3485387 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.60 50.0 4.97e-01 100.0% 88.0%
3550844 277.1.1.1 a+b two layers › PX domain › PX domain › PX domain › PX 0.59 48.0 3.68e-01 88.9% 58.1%
3412668 277.1.1.1 a+b two layers › PX domain › PX domain › PX domain › PX 0.58 48.0 4.04e-01 90.3% 75.8%
3251342 277.1.1.1 a+b two layers › PX domain › PX domain › PX domain › PX 0.58 48.0 4.06e-01 91.7% 78.3%
3741279 277.1.1.1 a+b two layers › PX domain › PX domain › PX domain › PX 0.57 47.0 3.77e-01 90.3% 70.0%
5030911 243.3.1.0 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.57 45.0 4.30e-01 84.7% 79.5%
4056532 4.1.1.248 beta barrels › SH3 › SH3 › SH3 › CABIT 0.57 50.0 4.37e-01 100.0% 78.2%
3738365 2.1.1.128 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Arb1 0.56 47.0 3.87e-01 91.7% 63.1%
3470047 243.1.1.2 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › NTF2 0.56 36.0 3.42e-01 77.8% 54.1%
3785390 277.1.1.1 a+b two layers › PX domain › PX domain › PX domain › PX 0.56 46.0 3.91e-01 91.7% 80.0%
4097328 9.3.1.3 beta barrels › Lipocalins/Streptavidin › Quinohemoprotein amine dehydrogenase A chain, domain 3-like › Quinohemoprotein amine dehydrogenase A chain, domain 3-like › Eryth_link_C 0.56 47.0 4.07e-01 100.0% 94.4%
4124146 277.1.1.1 a+b two layers › PX domain › PX domain › PX domain › PX 0.56 46.0 3.58e-01 90.3% 63.2%
3550168 4.8.1.27 beta barrels › SH3 › Chromo domain-like › Chromo domain-like › CUL7_CUL9_N 0.56 43.0 4.10e-01 87.5% 77.8%
4015826 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.55 48.0 3.88e-01 98.6% 77.9%
3833642 708.1.1.1 beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain › NAM 0.55 40.0 3.50e-01 77.8% 57.0%
3177392 2.1.1.52 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Stn1 0.55 46.0 3.45e-01 94.4% 71.1%
1269332 5.1.2.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed › Glyco_hydro_32N 0.55 47.0 2.99e-01 94.4% 26.8%
3262206 330.1.1.4 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › Rad52_Rad22 0.55 45.0 3.51e-01 90.3% 46.9%
3670792 243.3.1.67 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › Phytochelatin_C 0.55 42.0 4.38e-01 83.3% 98.5%
3471294 243.1.1.2 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › NTF2 0.55 42.0 3.53e-01 84.7% 83.7%
3258651 206.1.1.0 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase 0.55 38.0 2.41e-01 93.1% 12.0%
3852438 883.1.1.24 a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like › PF29321 0.54 44.0 3.36e-01 91.7% 53.9%
3610968 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.54 44.0 3.98e-01 90.3% 99.0%
861 9.3.1.3 beta barrels › Lipocalins/Streptavidin › Quinohemoprotein amine dehydrogenase A chain, domain 3-like › Quinohemoprotein amine dehydrogenase A chain, domain 3-like › Eryth_link_C 0.54 45.0 3.88e-01 100.0% 91.4%
3787765 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.54 39.0 3.35e-01 79.2% 77.6%
3867704 2007.2.3.1 a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase 0.53 43.0 2.85e-01 90.3% 28.1%
3721524 243.1.1.0 a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.53 43.0 3.53e-01 91.7% 80.0%
3914493 2007.2.3.1 a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase 0.53 43.0 2.54e-01 90.3% 14.5%
3723969 243.1.1.0 a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.53 43.0 3.37e-01 91.7% 73.1%
5077937 4272.1.1.1 a+b two layers › Nqo5-like › Nqo5-like › Nqo5-like › Complex1_30kDa 0.52 46.0 3.79e-01 98.6% 64.6%
3217507 243.1.1.98 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › DUF5382_C 0.52 39.0 3.45e-01 83.3% 82.5%
3710733 243.1.1.2 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › NTF2 0.51 40.0 3.39e-01 84.7% 86.7%
5014254 243.3.1.0 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.51 36.0 3.88e-01 81.9% 90.0%
D3 high residues 177-231
PDB
Domain cluster: representative
CATH (13)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3oymA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.65 46.0 4.28e-01 76.4% 74.3%
1ggpB02 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.63 44.0 3.46e-01 74.5% 99.2%
5ajiB02 2.30.30.60 Mainly Beta › Roll › SH3 type barrels. › 0.63 44.0 4.59e-01 76.4% 90.0%
4ry2A01 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.61 51.0 3.85e-01 96.4% 39.0%
2eyqA05 2.40.10.170 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.60 50.0 4.96e-01 98.2% 98.3%
2ct4A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.60 47.0 4.44e-01 90.9% 88.6%
4gnxA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.57 46.0 3.78e-01 92.7% 74.1%
2gfaB01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.57 40.0 3.91e-01 78.2% 88.7%
3v9fA02 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.56 40.0 2.62e-01 80.0% 89.1%
1u1sA00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.56 45.0 4.35e-01 94.5% 83.3%
3h27A00 3.50.50.100 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › 0.55 41.0 2.50e-01 85.5% 37.8%
2nn6I02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.53 40.0 3.20e-01 89.1% 69.0%
2jh1A01 3.90.640.70 Alpha Beta › Alpha-Beta Complex › Actin; Chain A, domain 4 › 0.50 36.0 3.04e-01 81.8% 85.2%
ECOD (21)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4002679 4.1.1.322 beta barrels › SH3 › SH3 › SH3 › GPKOW_C 0.71 58.0 4.49e-01 90.9% 95.8%
3555931 4.1.1.322 beta barrels › SH3 › SH3 › SH3 › GPKOW_C 0.68 60.0 4.74e-01 100.0% 94.8%
3862126 4.1.1.236 beta barrels › SH3 › SH3 › SH3 › KOWx_SPT5 0.68 51.0 5.03e-01 87.3% 75.0%
3326980 4.1.1.33 beta barrels › SH3 › SH3 › SH3 › Myosin_N 0.66 51.0 4.96e-01 83.6% 85.0%
3620554 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.66 55.0 4.73e-01 100.0% 75.8%
4009281 219.1.1.65 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › GspA_C39-like 0.66 49.0 4.12e-01 85.5% 54.3%
4120506 243.11.1.4 a+b two layers › Cystatin-like › NP_346341.1 protein › NP_346341.1 protein › PF29632 0.66 53.0 4.74e-01 90.9% 70.0%
3404936 4.1.1.33 beta barrels › SH3 › SH3 › SH3 › Myosin_N 0.65 46.0 4.78e-01 74.5% 90.0%
3514867 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.63 47.0 4.33e-01 83.6% 78.7%
5051419 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.62 42.0 4.24e-01 81.8% 70.9%
5051148 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.62 42.0 4.11e-01 83.6% 65.0%
1884741 4.1.1.130 beta barrels › SH3 › SH3 › SH3 › SH3_19 0.61 44.0 4.39e-01 81.8% 89.8%
3964733 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.60 43.0 4.37e-01 78.2% 87.3%
3715045 292.2.1.0 a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain 0.60 43.0 4.02e-01 74.5% 65.7%
3963455 219.1.1.18 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C39 0.60 49.0 3.77e-01 98.2% 46.9%
3282690 219.1.1.8 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › NLPC_P60 0.60 50.0 3.97e-01 96.4% 44.2%
3796759 4.1.1.287 beta barrels › SH3 › SH3 › SH3 › DUF5641 0.60 41.0 3.51e-01 72.7% 51.6%
4979962 4.1.1.13 beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.57 43.0 4.22e-01 89.1% 78.5%
3483499 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.55 38.0 3.60e-01 78.2% 98.7%
3926041 5.1.5.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › WD40 0.53 45.0 2.83e-01 100.0% 81.2%
4012135 5.1.3.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.51 40.0 2.60e-01 100.0% 89.2%