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MG543995.1__ATW69178.1__CJF57_00015__00015

Bact-Vir

MG543995.1__ATW69178.1__CJF57_00015__00015

Identity

Accession:
MG543995 ↗
Kingdom:
phage

Quality

82.6 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Staphylococcus_phage_UPMK_1

TaxID: 2025806

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 1-109
PDB
Domain cluster: rep: NC_028888.1__YP_009206685.1__CL1_29__00029__D133-224
Pfam (2)
AccessionNameScoreE-valueQ covHMM cov
PF16784.11 best HNHc_6 186.4 6.70e-55 100.0% 52.4%
PF06147.19 DUF968 35.5 1.40e-08 82.6% 38.6%
CATH (2)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4e1pA00 3.30.60.230 Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › Lsr2, dimerisation domain 0.67 29.0 4.08e-01 74.3% 81.8%
3mhsA01 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.53 30.0 2.86e-01 95.4% 45.7%
ECOD (4)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4293536 4232.1.1.0 ↗ few secondary structure elements › Ribosomal protein bL28-related › Ribosomal protein bL28-related › Ribosomal protein L28 0.71 34.0 4.84e-01 82.6% 100.0%
4342292 4232.1.1.1 ↗ few secondary structure elements › Ribosomal protein bL28-related › Ribosomal protein bL28-related › Ribosomal protein L28 › Ribosomal_L28 0.68 34.0 4.64e-01 83.5% 96.4%
4986026 378.1.1.2 ↗ few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH 0.58 42.0 3.55e-01 75.2% 62.2%
4314014 4232.1.1.1 ↗ few secondary structure elements › Ribosomal protein bL28-related › Ribosomal protein bL28-related › Ribosomal protein L28 › Ribosomal_L28 0.58 35.0 3.95e-01 87.2% 81.2%