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MG543995.1__ATW69218.1__CJF57_00055__00055

Bact-Vir

MG543995.1__ATW69218.1__CJF57_00055__00055

Identity

Accession:
MG543995 ↗
Kingdom:
phage

Quality

83.2 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Staphylococcus_phage_UPMK_1

TaxID: 2025806

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 245-322
PDB
Domain cluster: rep: MZ573780.2__QYC50940.1__X__00040__D391-466
D2 medium residues 1-79
PDB
Domain cluster: representative
D3 medium residues 80-126_153-198
PDB
Domain cluster: representative
CATH (14)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3ci0K01 3.30.1300.30 Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › GSPII I/J protein-like 0.67 49.0 4.79e-01 77.4% 82.7%
2it9A00 2.30.31.10 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A 0.59 42.0 3.92e-01 75.3% 60.0%
4jocA00 3.40.50.1240 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Phosphoglycerate mutase-like 0.58 48.0 3.32e-01 93.5% 68.3%
4exrA02 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.55 35.0 3.85e-01 71.0% 83.1%
3s6pA03 2.60.270.70 Mainly Beta › Sandwich › Mutm (Fpg) Protein; Chain: A, domain 2 › 0.55 47.0 4.07e-01 93.5% 69.7%
2jj6A00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.55 38.0 3.40e-01 72.0% 85.8%
4l9cA00 3.40.1000.30 Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › 0.54 41.0 3.52e-01 80.6% 68.0%
6n44A00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.54 38.0 3.37e-01 74.2% 81.3%
4u6bA00 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.54 47.0 3.26e-01 100.0% 53.9%
4exrA01 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.53 36.0 3.85e-01 95.7% 82.7%
3cwxA00 3.40.1420.20 Alpha Beta › 3-Layer(aba) Sandwich › Inhibitor of vertebrate lysozyme, Ivy › Pathogenicity island component CagD 0.52 43.0 3.85e-01 92.5% 64.0%
3stoA02 2.30.39.10 Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 0.52 37.0 3.22e-01 74.2% 99.3%
4hbrA00 3.10.450.360 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.51 45.0 3.96e-01 100.0% 85.7%
3buuB00 2.50.20.10 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX 0.51 43.0 3.31e-01 94.6% 85.9%
ECOD (17)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4033743 243.19.1.0 ↗ a+b two layers › Cystatin-like › Phi ETA orf 56-like protein C-terminal domains › Phi ETA orf 56-like protein C-terminal domains 0.99 87.0 9.15e-01 90.3% 100.0%
4033339 520.1.1.2 ↗ beta sandwiches › gp9 N-terminal domain-like › gp9 N-terminal domain-related › gp9 N-terminal domain-related › PF27308 0.91 78.0 8.21e-01 90.3% 100.0%
4031359 243.19.1.0 ↗ a+b two layers › Cystatin-like › Phi ETA orf 56-like protein C-terminal domains › Phi ETA orf 56-like protein C-terminal domains 0.85 73.0 7.65e-01 90.3% 100.0%
4342741 243.19.1.3 ↗ a+b two layers › Cystatin-like › Phi ETA orf 56-like protein C-terminal domains › Phi ETA orf 56-like protein C-terminal domains › XkdV_N 0.82 70.0 7.37e-01 91.4% 100.0%
3967853 243.19.1.0 ↗ a+b two layers › Cystatin-like › Phi ETA orf 56-like protein C-terminal domains › Phi ETA orf 56-like protein C-terminal domains 0.79 66.0 6.12e-01 91.4% 72.2%
3974671 243.19.1.0 ↗ a+b two layers › Cystatin-like › Phi ETA orf 56-like protein C-terminal domains › Phi ETA orf 56-like protein C-terminal domains 0.77 62.0 6.47e-01 83.9% 94.1%
4681650 71.1.1.3 ↗ beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › LolB 0.69 46.0 3.70e-01 94.6% 36.6%
3690594 207.1.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.65 58.0 3.56e-01 97.8% 27.1%
4927376 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.60 54.0 3.66e-01 100.0% 58.8%
3922884 5.1.4.271 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, PF30361 0.58 52.0 3.51e-01 100.0% 63.3%
3258731 241.15.1.2 ↗ a+b two layers › Type III secretory system chaperone-like › FP (Fbxo7/PI31) dimerization domain › FP (Fbxo7/PI31) dimerization domain › PI31_Prot_N 0.58 43.0 3.77e-01 78.5% 73.6%
4544477 3369.1.1.2 ↗ beta meanders › lysosome-associated membrane protein LAMP-3 › lysosome-associated membrane protein LAMP-3 › lysosome-associated membrane protein LAMP-3 › VAS1_LD 0.58 43.0 3.77e-01 79.6% 52.1%
5036065 243.3.1.0 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.56 43.0 4.72e-01 93.5% 100.0%
4311063 71.1.1.3 ↗ beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › LolB 0.56 46.0 3.71e-01 89.2% 97.2%
3389888 10.1.1.4 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Gal-bind_lectin 0.55 42.0 3.48e-01 82.8% 82.4%
1140350 241.15.1.2 ↗ a+b two layers › Type III secretory system chaperone-like › FP (Fbxo7/PI31) dimerization domain › FP (Fbxo7/PI31) dimerization domain › PI31_Prot_N 0.53 40.0 3.44e-01 80.6% 65.8%
3904660 4099.1.1.10 ↗ a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like › Med1 0.50 45.0 3.48e-01 98.9% 71.7%