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MG543995.1__ATW69219.1__CJF57_00056__00056
Bact-VirMG543995.1__ATW69219.1__CJF57_00056__00056
Identity
- Accession:
- MG543995 ↗
- Kingdom:
- phage
Quality
93.7
mean pLDDT
Cluster
View cluster (2 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 343-526
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF01293.26 best | PEPCK_ATP | 233.4 | 6.60e-69 | 76.6% | 30.1% |
CATH (2)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1ii2A03 | 3.90.228.20 | Alpha Beta › Alpha-Beta Complex › Phosphoenolpyruvate Carboxykinase; domain 3 › | 0.93 | 90.0 | 7.86e-01 | 100.0% | 73.0% |
| 1khbA03 | 3.90.228.20 | Alpha Beta › Alpha-Beta Complex › Phosphoenolpyruvate Carboxykinase; domain 3 › | 0.78 | 70.0 | 6.11e-01 | 100.0% | 65.0% |
ECOD (21)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3298140 | 2004.1.2.2 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › PEP carboxykinase catalytic C-terminal domain › PEPCK_ATP | 0.98 | 97.0 | 7.63e-01 | 100.0% | 59.4% |
| 3643957 | 2004.1.2.2 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › PEP carboxykinase catalytic C-terminal domain › PEPCK_ATP | 0.98 | 97.0 | 7.67e-01 | 100.0% | 60.0% |
| 3593180 | 2004.1.2.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › PEP carboxykinase catalytic C-terminal domain | 0.94 | 91.0 | 7.31e-01 | 100.0% | 58.4% |
| 4517021 | 2004.1.2.2 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › PEP carboxykinase catalytic C-terminal domain › PEPCK_ATP | 0.91 | 80.0 | 6.55e-01 | 100.0% | 54.4% |
| 4935244 | 2004.1.2.2 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › PEP carboxykinase catalytic C-terminal domain › PEPCK_ATP | 0.88 | 81.0 | 6.55e-01 | 100.0% | 55.0% |
| 3259001 | 2004.1.2.2 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › PEP carboxykinase catalytic C-terminal domain › PEPCK_ATP | 0.88 | 66.0 | 5.95e-01 | 92.9% | 59.6% |
| 5065005 | 2004.1.2.2 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › PEP carboxykinase catalytic C-terminal domain › PEPCK_ATP | 0.87 | 84.0 | 6.57e-01 | 100.0% | 55.1% |
| 4978997 | 2004.1.2.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › PEP carboxykinase catalytic C-terminal domain | 0.86 | 83.0 | 6.20e-01 | 100.0% | 54.3% |
| 4968744 | 2004.1.2.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › PEP carboxykinase catalytic C-terminal domain | 0.85 | 81.0 | 6.30e-01 | 100.0% | 55.3% |
| 5043202 | 2004.1.2.2 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › PEP carboxykinase catalytic C-terminal domain › PEPCK_ATP | 0.84 | 80.0 | 6.18e-01 | 100.0% | 54.8% |
| 4974958 | 2004.1.2.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › PEP carboxykinase catalytic C-terminal domain | 0.84 | 80.0 | 6.08e-01 | 100.0% | 57.1% |
| 3586917 | 2004.1.2.2 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › PEP carboxykinase catalytic C-terminal domain › PEPCK_ATP | 0.83 | 74.0 | 6.03e-01 | 100.0% | 54.3% |
| 3346352 | 2004.1.2.2 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › PEP carboxykinase catalytic C-terminal domain › PEPCK_ATP | 0.81 | 67.0 | 5.61e-01 | 98.4% | 54.0% |
| 4972022 | 2004.1.2.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › PEP carboxykinase catalytic C-terminal domain | 0.78 | 74.0 | 5.68e-01 | 100.0% | 49.2% |
| 3481160 | 2004.1.2.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › PEP carboxykinase catalytic C-terminal domain | 0.78 | 73.0 | 5.65e-01 | 100.0% | 49.6% |
| 4333056 | 2004.1.2.1 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › PEP carboxykinase catalytic C-terminal domain › PEPCK_GTP | 0.78 | 73.0 | 5.67e-01 | 100.0% | 49.6% |
| 5046405 | 2004.1.2.1 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › PEP carboxykinase catalytic C-terminal domain › PEPCK_GTP | 0.77 | 73.0 | 5.59e-01 | 100.0% | 49.1% |
| 4279416 | 2004.1.2.1 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › PEP carboxykinase catalytic C-terminal domain › PEPCK_GTP | 0.76 | 72.0 | 5.76e-01 | 100.0% | 54.6% |
| 3240507 | 2004.1.2.1 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › PEP carboxykinase catalytic C-terminal domain › PEPCK_GTP | 0.76 | 72.0 | 5.57e-01 | 100.0% | 49.1% |
| 3226369 | 2004.1.2.1 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › PEP carboxykinase catalytic C-terminal domain › PEPCK_GTP | 0.73 | 68.0 | 5.70e-01 | 100.0% | 60.7% |
| 3676418 | 2004.1.2.2 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › PEP carboxykinase catalytic C-terminal domain › PEPCK_ATP | 0.70 | 51.0 | 4.89e-01 | 98.9% | 65.7% |
D2
medium
residues 16-147
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF01293.26 best | PEPCK_ATP | 141.1 | 6.50e-41 | 97.0% | 26.9% |
CATH (4)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1ii2B01 | 3.40.449.10 | Alpha Beta › 3-Layer(aba) Sandwich › Phosphoenolpyruvate Carboxykinase; domain 1 › Phosphoenolpyruvate Carboxykinase, domain 1 | 0.94 | 78.0 | 6.86e-01 | 98.5% | 62.9% |
| 1j3bB01 | 3.40.449.10 | Alpha Beta › 3-Layer(aba) Sandwich › Phosphoenolpyruvate Carboxykinase; domain 1 › Phosphoenolpyruvate Carboxykinase, domain 1 | 0.86 | 78.0 | 6.70e-01 | 100.0% | 64.6% |
| 1ylhA01 | 3.40.449.10 | Alpha Beta › 3-Layer(aba) Sandwich › Phosphoenolpyruvate Carboxykinase; domain 1 › Phosphoenolpyruvate Carboxykinase, domain 1 | 0.81 | 77.0 | 6.46e-01 | 100.0% | 64.8% |
| 1ue6D00 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.51 | 23.0 | 2.59e-01 | 88.6% | 51.0% |
ECOD (15)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3600050 | 2004.11.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › PEP carboxykinase N-terminal domain › PEP carboxykinase N-terminal domain | 0.98 | 91.0 | 7.72e-01 | 95.5% | 66.2% |
| 3184929 | 2004.11.1.1 ↗ | a/b three-layered sandwiches › P-loop domains-like › PEP carboxykinase N-terminal domain › PEP carboxykinase N-terminal domain › PEPCK_ATP | 0.97 | 95.0 | 7.72e-01 | 100.0% | 68.4% |
| 3823619 | 2004.11.1.1 ↗ | a/b three-layered sandwiches › P-loop domains-like › PEP carboxykinase N-terminal domain › PEP carboxykinase N-terminal domain › PEPCK_ATP | 0.96 | 94.0 | 7.50e-01 | 100.0% | 69.3% |
| 4108688 | 2004.11.1.1 ↗ | a/b three-layered sandwiches › P-loop domains-like › PEP carboxykinase N-terminal domain › PEP carboxykinase N-terminal domain › PEPCK_ATP | 0.96 | 93.0 | 7.80e-01 | 100.0% | 65.5% |
| 4036696 | 2004.11.1.1 ↗ | a/b three-layered sandwiches › P-loop domains-like › PEP carboxykinase N-terminal domain › PEP carboxykinase N-terminal domain › PEPCK_ATP | 0.96 | 94.0 | 7.63e-01 | 100.0% | 64.2% |
| 4223967 | 2004.11.1.1 ↗ | a/b three-layered sandwiches › P-loop domains-like › PEP carboxykinase N-terminal domain › PEP carboxykinase N-terminal domain › PEPCK_ATP | 0.95 | 93.0 | 7.73e-01 | 100.0% | 67.3% |
| 4071729 | 2004.11.1.1 ↗ | a/b three-layered sandwiches › P-loop domains-like › PEP carboxykinase N-terminal domain › PEP carboxykinase N-terminal domain › PEPCK_ATP | 0.94 | 91.0 | 7.36e-01 | 100.0% | 68.4% |
| 3259034 | 2004.11.1.1 ↗ | a/b three-layered sandwiches › P-loop domains-like › PEP carboxykinase N-terminal domain › PEP carboxykinase N-terminal domain › PEPCK_ATP | 0.82 | 78.0 | 6.55e-01 | 100.0% | 64.9% |
| 4943516 | 2004.11.1.2 ↗ | a/b three-layered sandwiches › P-loop domains-like › PEP carboxykinase N-terminal domain › PEP carboxykinase N-terminal domain › PEPCK_N | 0.82 | 77.0 | 6.21e-01 | 100.0% | 61.7% |
| 3609757 | 2004.11.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › PEP carboxykinase N-terminal domain › PEP carboxykinase N-terminal domain | 0.81 | 77.0 | 6.03e-01 | 100.0% | 60.1% |
| 3440980 | 2004.11.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › PEP carboxykinase N-terminal domain › PEP carboxykinase N-terminal domain | 0.81 | 69.0 | 5.95e-01 | 100.0% | 61.6% |
| 3957641 | 252.2.1.0 ↗ | a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like | 0.66 | 26.0 | 3.93e-01 | 91.7% | 87.3% |
| 4419843 | 4959.1.1.1 ↗ | a+b complex topology › first helical domain in RNA-polymerase beta-prime subunit › first helical domain in RNA-polymerase beta-prime subunit › first helical domain in RNA-polymerase beta-prime subunit › RNA_pol_Rpb1_3 | 0.57 | 28.0 | 2.50e-01 | 93.9% | 31.1% |
| 4598945 | 4959.1.1.0 ↗ | a+b complex topology › first helical domain in RNA-polymerase beta-prime subunit › first helical domain in RNA-polymerase beta-prime subunit › first helical domain in RNA-polymerase beta-prime subunit | 0.54 | 29.0 | 2.85e-01 | 95.5% | 45.5% |
| 4281736 | 80.1.1.1 ↗ | beta complex topology › HesB-like domain › HesB-like domain › HesB-like domain › Fe-S_biosyn | 0.53 | 29.0 | 3.13e-01 | 100.0% | 61.8% |
D3
medium
residues 148-216
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF01293.26 best | PEPCK_ATP | 90.4 | 1.60e-25 | 100.0% | 14.4% |
CATH (25)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1j3bB01 | 3.40.449.10 | Alpha Beta › 3-Layer(aba) Sandwich › Phosphoenolpyruvate Carboxykinase; domain 1 › Phosphoenolpyruvate Carboxykinase, domain 1 | 0.96 | 90.0 | 6.28e-01 | 98.6% | 36.0% |
| 1ii2B01 | 3.40.449.10 | Alpha Beta › 3-Layer(aba) Sandwich › Phosphoenolpyruvate Carboxykinase; domain 1 › Phosphoenolpyruvate Carboxykinase, domain 1 | 0.94 | 88.0 | 6.25e-01 | 98.6% | 38.8% |
| 1ylhA01 | 3.40.449.10 | Alpha Beta › 3-Layer(aba) Sandwich › Phosphoenolpyruvate Carboxykinase; domain 1 › Phosphoenolpyruvate Carboxykinase, domain 1 | 0.92 | 86.0 | 5.95e-01 | 98.6% | 34.7% |
| 1khbA01 | 3.40.449.10 | Alpha Beta › 3-Layer(aba) Sandwich › Phosphoenolpyruvate Carboxykinase; domain 1 › Phosphoenolpyruvate Carboxykinase, domain 1 | 0.73 | 66.0 | 4.48e-01 | 97.1% | 35.9% |
| 3p9dG02 | 3.30.260.10 | Alpha Beta › 2-Layer Sandwich › GROEL; domain 2 › TCP-1-like chaperonin intermediate domain | 0.70 | 53.0 | 4.68e-01 | 92.8% | 56.0% |
| 6ks6B02 | 3.30.260.10 | Alpha Beta › 2-Layer Sandwich › GROEL; domain 2 › TCP-1-like chaperonin intermediate domain | 0.65 | 54.0 | 4.41e-01 | 89.9% | 59.8% |
| 4zi6C01 | 3.40.220.10 | Alpha Beta › 3-Layer(aba) Sandwich › Leucine Aminopeptidase, subunit E; domain 1 › Leucine Aminopeptidase, subunit E, domain 1 | 0.61 | 52.0 | 4.01e-01 | 100.0% | 71.0% |
| 3ewnA00 | 3.40.50.880 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Class I glutamine amidotransferase (GATase) domain | 0.60 | 48.0 | 3.34e-01 | 89.9% | 46.7% |
| 2olnA01 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.60 | 48.0 | 3.46e-01 | 91.3% | 94.5% |
| 3f5dA00 | 3.40.50.880 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Class I glutamine amidotransferase (GATase) domain | 0.59 | 49.0 | 3.61e-01 | 94.2% | 86.5% |
| 4x9mA01 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.58 | 47.0 | 3.35e-01 | 91.3% | 92.9% |
| 4paaA01 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.56 | 47.0 | 3.26e-01 | 95.7% | 82.9% |
| 4twgC00 | 3.40.980.10 | Alpha Beta › 3-Layer(aba) Sandwich › Molybdenum Cofactor Biosythetic Enzyme; Chain A › MoaB/Mog-like domain | 0.56 | 47.0 | 3.72e-01 | 98.6% | 77.1% |
| 3eeiA00 | 3.40.50.1580 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nucleoside phosphorylase domain | 0.55 | 46.0 | 3.29e-01 | 95.7% | 89.2% |
| 1x31B01 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.54 | 45.0 | 3.19e-01 | 95.7% | 40.7% |
| 2g2cA00 | 3.40.980.10 | Alpha Beta › 3-Layer(aba) Sandwich › Molybdenum Cofactor Biosythetic Enzyme; Chain A › MoaB/Mog-like domain | 0.54 | 42.0 | 3.47e-01 | 92.8% | 100.0% |
| 2a8pA00 | 3.90.79.10 | Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase | 0.54 | 42.0 | 3.16e-01 | 88.4% | 77.1% |
| 3wndA01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.53 | 45.0 | 3.46e-01 | 98.6% | 86.0% |
| 5fbhA01 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.52 | 37.0 | 2.50e-01 | 73.9% | 87.0% |
| 5q22A02 | 3.40.50.12650 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.52 | 42.0 | 3.35e-01 | 91.3% | 59.5% |
| 3ug7C00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.52 | 45.0 | 3.00e-01 | 100.0% | 61.1% |
| 6ioyC02 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.51 | 40.0 | 3.05e-01 | 92.8% | 77.1% |
| 1f6bB00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.51 | 41.0 | 3.13e-01 | 92.8% | 61.7% |
| 1nijA01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.50 | 41.0 | 2.97e-01 | 89.9% | 41.8% |
| 1n6zA00 | 3.10.20.250 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › YML108W-like | 0.50 | 38.0 | 3.34e-01 | 81.2% | 93.3% |
ECOD (41)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4223967 | 2004.11.1.1 ↗ | a/b three-layered sandwiches › P-loop domains-like › PEP carboxykinase N-terminal domain › PEP carboxykinase N-terminal domain › PEPCK_ATP | 0.98 | 93.0 | 6.29e-01 | 98.6% | 33.2% |
| 4036696 | 2004.11.1.1 ↗ | a/b three-layered sandwiches › P-loop domains-like › PEP carboxykinase N-terminal domain › PEP carboxykinase N-terminal domain › PEPCK_ATP | 0.97 | 91.0 | 6.14e-01 | 98.6% | 31.6% |
| 3600050 | 2004.11.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › PEP carboxykinase N-terminal domain › PEP carboxykinase N-terminal domain | 0.94 | 89.0 | 6.12e-01 | 98.6% | 35.4% |
| 3184929 | 2004.11.1.1 ↗ | a/b three-layered sandwiches › P-loop domains-like › PEP carboxykinase N-terminal domain › PEP carboxykinase N-terminal domain › PEPCK_ATP | 0.94 | 87.0 | 5.87e-01 | 97.1% | 31.2% |
| 3823619 | 2004.11.1.1 ↗ | a/b three-layered sandwiches › P-loop domains-like › PEP carboxykinase N-terminal domain › PEP carboxykinase N-terminal domain › PEPCK_ATP | 0.94 | 85.0 | 5.67e-01 | 95.7% | 29.4% |
| 4071729 | 2004.11.1.1 ↗ | a/b three-layered sandwiches › P-loop domains-like › PEP carboxykinase N-terminal domain › PEP carboxykinase N-terminal domain › PEPCK_ATP | 0.93 | 86.0 | 5.72e-01 | 97.1% | 30.2% |
| 4108688 | 2004.11.1.1 ↗ | a/b three-layered sandwiches › P-loop domains-like › PEP carboxykinase N-terminal domain › PEP carboxykinase N-terminal domain › PEPCK_ATP | 0.91 | 85.0 | 5.87e-01 | 98.6% | 34.5% |
| 3683785 | 2004.11.1.1 ↗ | a/b three-layered sandwiches › P-loop domains-like › PEP carboxykinase N-terminal domain › PEP carboxykinase N-terminal domain › PEPCK_ATP | 0.83 | 64.0 | 4.85e-01 | 81.2% | 38.5% |
| 5043201 | 2004.11.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › PEP carboxykinase N-terminal domain › PEP carboxykinase N-terminal domain | 0.82 | 74.0 | 5.20e-01 | 100.0% | 34.2% |
| 3259034 | 2004.11.1.1 ↗ | a/b three-layered sandwiches › P-loop domains-like › PEP carboxykinase N-terminal domain › PEP carboxykinase N-terminal domain › PEPCK_ATP | 0.77 | 67.0 | 4.76e-01 | 97.1% | 33.2% |
| 5011605 | 2498.1.1.0 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" | 0.66 | 46.0 | 3.39e-01 | 84.1% | 27.8% |
| 3253572 | 2498.5.1.0 ↗ | mixed a+b and a/b › Zincin-like › GroEL-intermediate domain like › GroEL-intermediate domain like | 0.64 | 53.0 | 4.75e-01 | 92.8% | 64.0% |
| 4043778 | 2003.1.3.8 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Nucleotide-binding domain › Mqo | 0.63 | 54.0 | 3.26e-01 | 100.0% | 48.9% |
| 4102022 | 2003.1.3.8 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Nucleotide-binding domain › Mqo | 0.62 | 54.0 | 3.44e-01 | 100.0% | 44.4% |
| 3785907 | 2498.1.1.0 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" | 0.62 | 53.0 | 4.44e-01 | 100.0% | 56.5% |
| 3783380 | 2011.2.1.3 ↗ | a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Peptidyl-tRNA hydrolase-like › Peptidyl-tRNA hydrolase-like › Pept_tRNA_hydro | 0.61 | 48.0 | 3.29e-01 | 87.0% | 35.3% |
| 4537352 | 2498.1.1.29 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M78 | 0.60 | 48.0 | 3.69e-01 | 94.2% | 37.5% |
| 3288863 | 2498.1.1.63 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Zn_peptidase | 0.60 | 52.0 | 3.68e-01 | 98.6% | 85.4% |
| 4929424 | 2498.1.1.0 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" | 0.60 | 48.0 | 4.28e-01 | 89.9% | 71.0% |
| 4020042 | 2003.1.3.0 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Nucleotide-binding domain | 0.59 | 49.0 | 3.43e-01 | 95.7% | 84.8% |
| 3596583 | 2003.1.2.0 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain | 0.59 | 50.0 | 3.12e-01 | 100.0% | 90.9% |
| 4017081 | 109.3.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat | 0.59 | 40.0 | 2.73e-01 | 71.0% | 71.1% |
| 3574082 | 2498.1.1.39 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › SprT-like | 0.59 | 47.0 | 4.36e-01 | 88.4% | 77.8% |
| 4142165 | 2003.1.3.8 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Nucleotide-binding domain › Mqo | 0.59 | 49.0 | 3.34e-01 | 100.0% | 49.1% |
| 4051075 | 2498.2.1.2 ↗ | mixed a+b and a/b › Zincin-like › beta-N-acetylhexosaminidase-like domain › beta-N-acetylhexosaminidase-like domain › Glyco_hydro_67N | 0.59 | 48.0 | 3.95e-01 | 91.3% | 77.7% |
| 3400611 | 2011.2.1.0 ↗ | a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Peptidyl-tRNA hydrolase-like › Peptidyl-tRNA hydrolase-like | 0.58 | 47.0 | 3.49e-01 | 94.2% | 90.5% |
| 5053045 | 2498.1.1.0 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" | 0.58 | 48.0 | 3.34e-01 | 92.8% | 77.4% |
| 3589463 | 2498.1.1.29 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M78 | 0.57 | 51.0 | 3.91e-01 | 98.6% | 81.9% |
| 4027213 | 2498.1.1.0 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" | 0.57 | 48.0 | 3.86e-01 | 94.2% | 52.6% |
| 3273366 | 2007.1.19.1 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › FabD/lysophospholipase-like › Acyl_transf_1 | 0.56 | 45.0 | 3.11e-01 | 94.2% | 58.9% |
| 3470470 | 2004.1.1.171 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Smg8_Smg9 | 0.56 | 48.0 | 3.22e-01 | 100.0% | 85.0% |
| 4877499 | 261.1.1.1 ↗ | a+b complex topology › Hect, E3 ligase catalytic domain › Hect, E3 ligase catalytic domain › Hect, E3 ligase catalytic domain › HECT | 0.54 | 37.0 | 3.56e-01 | 88.4% | 60.7% |
| 3250105 | 2004.1.1.19 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Ras | 0.53 | 46.0 | 3.31e-01 | 100.0% | 67.7% |
| 5052444 | 2004.1.1.16 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Arf | 0.52 | 46.0 | 3.45e-01 | 100.0% | 77.1% |
| 1933342 | 2011.2.1.1 ↗ | a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Peptidyl-tRNA hydrolase-like › Peptidyl-tRNA hydrolase-like › PNP_UDP_1 | 0.52 | 40.0 | 3.62e-01 | 84.1% | 68.8% |
| 4946557 | 2004.1.1.119 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Gtr1_RagA | 0.52 | 42.0 | 3.18e-01 | 91.3% | 77.8% |
| 4579339 | 7529.1.1.0 ↗ | a/b three-layered sandwiches › Macro domain-like › Macro domain-like › Macro domain-like | 0.52 | 43.0 | 3.58e-01 | 97.1% | 83.7% |
| 4032904 | 2.1.1.7 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › S1 | 0.52 | 36.0 | 3.29e-01 | 71.0% | 86.7% |
| 3970877 | 3156.1.1.0 ↗ | beta sandwiches › Cupredoxin-like › Cupredoxin-related › Cupredoxin-related | 0.51 | 40.0 | 3.11e-01 | 84.1% | 87.3% |
| 3939832 | 2006.1.6.39 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › vWA-like › Mat89Bb | 0.51 | 40.0 | 2.82e-01 | 88.4% | 72.2% |
| 3276009 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.51 | 31.0 | 2.32e-01 | 92.8% | 20.0% |
D4
medium
residues 272-330
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF01293.26 best | PEPCK_ATP | 84.4 | 1.10e-23 | 100.0% | 12.9% |
CATH (7)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1ii2A02 | 2.170.8.10 | Mainly Beta › Beta Complex › Phosphoenolpyruvate Carboxykinase; domain 2 › Phosphoenolpyruvate Carboxykinase, domain 2 | 0.94 | 88.0 | 7.80e-01 | 98.3% | 74.7% |
| 1khbA02 | 2.170.8.10 | Mainly Beta › Beta Complex › Phosphoenolpyruvate Carboxykinase; domain 2 › Phosphoenolpyruvate Carboxykinase, domain 2 | 0.89 | 80.0 | 6.50e-01 | 96.6% | 80.4% |
| 3enuA00 | 2.60.20.10 | Mainly Beta › Sandwich › Gamma-B Crystallin; domain 1 › Crystallins | 0.56 | 36.0 | 2.92e-01 | 93.2% | 34.2% |
| 4hlyA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.52 | 35.0 | 3.00e-01 | 71.2% | 100.0% |
| 1pqsA00 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.51 | 41.0 | 3.90e-01 | 96.6% | 97.4% |
| 3w5mA04 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.51 | 42.0 | 3.40e-01 | 94.9% | 93.3% |
| 4v19R01 | 3.90.1030.10 | Alpha Beta › Alpha-Beta Complex › 50s Ribosomal Protein L17; Chain: A, › Ribosomal protein L17 | 0.50 | 34.0 | 2.91e-01 | 72.9% | 92.0% |
ECOD (15)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3298140 | 2004.1.2.2 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › PEP carboxykinase catalytic C-terminal domain › PEPCK_ATP | 1.00 | 97.0 | 5.76e-01 | 100.0% | 18.5% |
| 3643957 | 2004.1.2.2 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › PEP carboxykinase catalytic C-terminal domain › PEPCK_ATP | 1.00 | 97.0 | 5.77e-01 | 100.0% | 18.8% |
| 3346352 | 2004.1.2.2 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › PEP carboxykinase catalytic C-terminal domain › PEPCK_ATP | 1.00 | 96.0 | 5.87e-01 | 100.0% | 21.1% |
| 4935244 | 2004.1.2.2 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › PEP carboxykinase catalytic C-terminal domain › PEPCK_ATP | 0.96 | 91.0 | 5.46e-01 | 100.0% | 18.8% |
| 3593180 | 2004.1.2.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › PEP carboxykinase catalytic C-terminal domain | 0.96 | 91.0 | 5.49e-01 | 100.0% | 18.8% |
| 5065005 | 2004.1.2.2 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › PEP carboxykinase catalytic C-terminal domain › PEPCK_ATP | 0.94 | 88.0 | 5.26e-01 | 100.0% | 17.4% |
| 3481160 | 2004.1.2.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › PEP carboxykinase catalytic C-terminal domain | 0.90 | 83.0 | 4.97e-01 | 100.0% | 23.6% |
| 3240507 | 2004.1.2.1 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › PEP carboxykinase catalytic C-terminal domain › PEPCK_GTP | 0.89 | 83.0 | 4.92e-01 | 100.0% | 25.1% |
| 4517021 | 2004.1.2.2 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › PEP carboxykinase catalytic C-terminal domain › PEPCK_ATP | 0.88 | 80.0 | 4.92e-01 | 100.0% | 18.8% |
| 5043202 | 2004.1.2.2 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › PEP carboxykinase catalytic C-terminal domain › PEPCK_ATP | 0.83 | 75.0 | 4.55e-01 | 100.0% | 17.8% |
| 4974958 | 2004.1.2.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › PEP carboxykinase catalytic C-terminal domain | 0.80 | 71.0 | 4.26e-01 | 100.0% | 16.9% |
| 3610083 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.55 | 40.0 | 3.53e-01 | 83.1% | 82.0% |
| 3784904 | 304.9.1.1 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1 | 0.55 | 46.0 | 4.07e-01 | 98.3% | 64.4% |
| 4992138 | 304.8.1.2 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT | 0.50 | 39.0 | 3.49e-01 | 100.0% | 57.8% |
| 4319369 | 304.8.1.1 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › Thr_dehydrat_C | 0.50 | 39.0 | 3.50e-01 | 100.0% | 57.8% |