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MG543995.1__ATW69231.1__CJF57_00068__00068
Bact-VirMG543995.1__ATW69231.1__CJF57_00068__00068
Identity
- Accession:
- MG543995 ↗
- Kingdom:
- phage
Quality
89.1
mean pLDDT
Cluster
View cluster (18 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 15-98
Domain cluster:
rep: KU160495.1__ALY08055.1__EauS123_00056__00056__D9-107
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF06114.20 best | Peptidase_M78 | 23.0 | 8.40e-05 | 96.4% | 64.8% |
CATH (12)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3dteA01 | 1.10.10.2910 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › | 0.86 | 80.0 | 7.06e-01 | 100.0% | 75.2% |
| 6rqxA02 | 1.10.390.10 | Mainly Alpha › Orthogonal Bundle › Neutral Protease; domain 2 › Neutral Protease Domain 2 | 0.75 | 68.0 | 4.81e-01 | 100.0% | 41.9% |
| 4wz9A02 | 1.10.390.10 | Mainly Alpha › Orthogonal Bundle › Neutral Protease; domain 2 › Neutral Protease Domain 2 | 0.75 | 68.0 | 4.78e-01 | 100.0% | 41.3% |
| 1xb2B02 | 3.30.479.20 | Alpha Beta › 2-Layer Sandwich › Tetrahydropterin Synthase; Chain A › Elongation factor Ts, dimerisation domain | 0.57 | 42.0 | 3.74e-01 | 78.6% | 70.2% |
| 5zjgA02 | 1.10.246.130 | Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › Gamma-glutamyltranspeptidase, large (L) subunit, C-terminal domain | 0.56 | 45.0 | 4.09e-01 | 86.9% | 94.6% |
| 1y56B01 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.54 | 39.0 | 2.88e-01 | 76.2% | 71.3% |
| 1or7B01 | 1.10.1740.10 | Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif | 0.54 | 36.0 | 3.56e-01 | 76.2% | 62.8% |
| 3q41A01 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.53 | 47.0 | 3.63e-01 | 100.0% | 80.6% |
| 6ldqA01 | 3.40.50.2000 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycogen Phosphorylase B; | 0.52 | 39.0 | 3.13e-01 | 82.1% | 63.3% |
| 1uqtA01 | 3.40.50.2000 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycogen Phosphorylase B; | 0.52 | 41.0 | 2.99e-01 | 86.9% | 56.8% |
| 4nlbA02 | 1.10.150.80 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › HRDC domain | 0.51 | 45.0 | 4.34e-01 | 95.2% | 94.7% |
| 1e6cA00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.50 | 37.0 | 2.98e-01 | 78.6% | 38.8% |
ECOD (57)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4033720 | 2498.1.1.29 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M78 | 0.98 | 95.0 | 7.31e-01 | 100.0% | 55.0% |
| 3589965 | 2498.1.1.29 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M78 | 0.82 | 77.0 | 6.41e-01 | 100.0% | 63.7% |
| 4159098 | 2498.1.1.29 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M78 | 0.82 | 75.0 | 5.88e-01 | 100.0% | 50.3% |
| 3954373 | 223.1.1.0 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains | 0.81 | 75.0 | 5.01e-01 | 100.0% | 31.5% |
| 3589463 | 2498.1.1.29 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M78 | 0.80 | 75.0 | 5.98e-01 | 100.0% | 58.1% |
| 3953982 | 2498.1.1.29 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M78 | 0.80 | 76.0 | 5.46e-01 | 100.0% | 45.2% |
| 3290645 | 2498.1.1.29 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M78 | 0.80 | 75.0 | 6.55e-01 | 100.0% | 70.0% |
| 5004191 | 2498.1.1.0 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" | 0.79 | 72.0 | 5.32e-01 | 100.0% | 51.4% |
| None | — | 0.79 | 73.0 | 5.18e-01 | 100.0% | 40.0% | |
| 5045924 | 2498.1.1.0 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" | 0.78 | 71.0 | 5.33e-01 | 100.0% | 53.0% |
| 4031195 | 2498.1.1.50 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Zn_peptidase_2 | 0.78 | 70.0 | 5.69e-01 | 100.0% | 64.5% |
| 4954380 | 2498.1.1.29 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M78 | 0.77 | 73.0 | 5.51e-01 | 100.0% | 48.9% |
| 5036683 | 2498.1.1.0 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" | 0.77 | 71.0 | 6.07e-01 | 100.0% | 78.5% |
| 3286933 | 2498.1.1.0 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" | 0.77 | 73.0 | 6.07e-01 | 100.0% | 75.4% |
| 3679089 | 2498.1.1.51 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › DA1-like | 0.77 | 71.0 | 4.92e-01 | 100.0% | 40.3% |
| 3291444 | 2498.1.1.0 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" | 0.77 | 71.0 | 5.77e-01 | 100.0% | 82.7% |
| 4952523 | 101.1.10.0 ↗ | alpha arrays › HTH › HTH › Cyclin-like | 0.77 | 70.0 | 4.96e-01 | 100.0% | 40.8% |
| 3676009 | 2498.1.1.51 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › DA1-like | 0.77 | 71.0 | 5.38e-01 | 100.0% | 59.6% |
| 3414358 | 2498.1.1.9 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M1 | 0.75 | 68.0 | 4.81e-01 | 100.0% | 38.0% |
| 5072135 | 2498.1.1.10 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M48 | 0.74 | 67.0 | 5.08e-01 | 100.0% | 72.8% |
| 4967994 | 2498.1.1.17 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › YgjP-like | 0.72 | 60.0 | 5.88e-01 | 100.0% | 83.3% |
| 5065493 | 2498.1.1.10 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M48 | 0.72 | 66.0 | 5.59e-01 | 100.0% | 74.1% |
| 4929588 | 2498.1.1.17 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › YgjP-like | 0.72 | 60.0 | 4.78e-01 | 100.0% | 46.9% |
| 4948072 | 2498.1.1.0 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" | 0.72 | 64.0 | 4.82e-01 | 100.0% | 49.8% |
| 4991382 | 2498.1.1.0 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" | 0.71 | 65.0 | 5.10e-01 | 100.0% | 61.2% |
| 5045114 | 2498.1.1.162 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › DUF5700 | 0.71 | 63.0 | 4.41e-01 | 100.0% | 38.9% |
| 5045375 | 2498.1.1.9 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M1 | 0.70 | 63.0 | 4.57e-01 | 100.0% | 40.9% |
| 5006204 | 2498.1.1.17 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › YgjP-like | 0.70 | 59.0 | 4.37e-01 | 100.0% | 37.1% |
| 5031785 | 2498.1.1.17 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › YgjP-like | 0.69 | 57.0 | 4.82e-01 | 100.0% | 54.3% |
| 3386105 | 2498.1.1.17 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › YgjP-like | 0.68 | 57.0 | 4.96e-01 | 100.0% | 59.2% |
| 4954771 | 2498.1.1.0 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" | 0.68 | 61.0 | 4.77e-01 | 97.6% | 72.9% |
| 4989311 | 2498.1.1.17 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › YgjP-like | 0.67 | 57.0 | 4.61e-01 | 97.6% | 49.7% |
| 4194668 | 2498.1.1.0 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" | 0.67 | 61.0 | 5.67e-01 | 100.0% | 80.0% |
| 4928093 | 2498.1.1.17 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › YgjP-like | 0.67 | 58.0 | 5.30e-01 | 100.0% | 71.8% |
| 5045750 | 1075.5.1.0 ↗ | alpha bundles › Type II ABC exporter transmembrane domain fold › Multidrug and toxic compound extrusion (MATE) transporter › Multidrug and toxic compound extrusion (MATE) transporter | 0.64 | 45.0 | 3.41e-01 | 72.6% | 71.5% |
| 3281858 | 2498.1.1.0 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" | 0.64 | 56.0 | 4.56e-01 | 100.0% | 57.0% |
| 3699668 | 2004.1.1.164 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Roc | 0.61 | 43.0 | 2.99e-01 | 72.6% | 72.5% |
| 3991252 | 2498.1.1.0 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" | 0.61 | 50.0 | 3.94e-01 | 100.0% | 43.5% |
| 3957469 | 2498.1.1.17 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › YgjP-like | 0.58 | 51.0 | 4.23e-01 | 97.6% | 55.3% |
| 4390756 | 311.1.1.1 ↗ | a+b three layers › Phoshotransferase/anion transport protein › Phoshotransferase/anion transport protein › Phoshotransferase/anion transport protein › PTS_EIIA_2 | 0.58 | 46.0 | 3.74e-01 | 86.9% | 54.5% |
| 3521643 | 611.12.1.1 ↗ | alpha bundles › N-cbl like › Izumo sperm-egg fusion protein 1 N-terminal domain › Izumo sperm-egg fusion protein 1 N-terminal domain › IZUMO | 0.57 | 41.0 | 3.52e-01 | 76.2% | 79.3% |
| 3887886 | 604.3.1.11 ↗ | alpha bundles › Spectrin repeat-like › BAG domain › BAG domain › DUF155 | 0.57 | 47.0 | 3.40e-01 | 91.7% | 66.9% |
| 3801875 | 604.1.1.135 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › DUF155 | 0.55 | 41.0 | 2.96e-01 | 79.8% | 51.4% |
| 4115486 | 604.3.1.11 ↗ | alpha bundles › Spectrin repeat-like › BAG domain › BAG domain › DUF155 | 0.55 | 43.0 | 3.48e-01 | 84.5% | 69.7% |
| 3721596 | 3755.4.1.0 ↗ | alpha bundles › YscO-like › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain | 0.55 | 38.0 | 3.28e-01 | 71.4% | 88.5% |
| 5015776 | 7512.1.1.30 ↗ | a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glyco_transf_4 | 0.54 | 38.0 | 2.97e-01 | 76.2% | 42.1% |
| 4996456 | 7512.1.1.0 ↗ | a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase | 0.53 | 38.0 | 2.97e-01 | 75.0% | 61.6% |
| 3264670 | 601.7.1.35 ↗ | alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain › UFL1_C | 0.53 | 39.0 | 3.47e-01 | 76.2% | 60.5% |
| 4184406 | 4070.1.1.2 ↗ | alpha arrays › FtsH protease domain-like › FtsH protease domain-like › FtsH protease domain-like › Peptidase_M50 | 0.52 | 43.0 | 3.11e-01 | 94.0% | 74.1% |
| 4569675 | 101.11.1.1 ↗ | alpha arrays › HTH › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › PNPase | 0.52 | 42.0 | 3.89e-01 | 100.0% | 69.5% |
| 3432966 | 7515.1.1.6 ↗ | a/b three-layered sandwiches › Alkaline phosphatase-like › Alkaline phosphatase-like › Alkaline phosphatase-like › Phosphodiest | 0.51 | 45.0 | 2.89e-01 | 100.0% | 99.5% |
| 4987831 | 7512.1.1.30 ↗ | a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glyco_transf_4 | 0.51 | 39.0 | 3.00e-01 | 81.0% | 35.8% |
| 4934379 | 7512.1.1.12 ↗ | a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glyco_tran_28_C | 0.51 | 40.0 | 3.25e-01 | 88.1% | 93.1% |
| 4145212 | 102.1.1.28 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH_6 | 0.51 | 37.0 | 3.09e-01 | 78.6% | 56.8% |
| 3165290 | 7529.1.1.12 ↗ | a/b three-layered sandwiches › Macro domain-like › Macro domain-like › Macro domain-like › DUF3663 | 0.51 | 42.0 | 3.96e-01 | 90.5% | 75.0% |
| 5082041 | 7512.1.1.39 ↗ | a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › TreT_GT1 | 0.51 | 41.0 | 3.00e-01 | 89.3% | 56.6% |
| 3390993 | 601.7.1.21 ↗ | alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain › NICE-3 | 0.50 | 35.0 | 3.45e-01 | 73.8% | 65.3% |
D2
high
residues 101-153
Domain cluster:
representative
CATH (41)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3fblA00 | 1.20.58.800 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.74 | 53.0 | 4.64e-01 | 77.4% | 100.0% |
| 7xpcA01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.73 | 54.0 | 3.29e-01 | 81.1% | 90.2% |
| 8hbfB01 | 3.90.1520.10 | Alpha Beta › Alpha-Beta Complex › H-NOX domain › H-NOX domain | 0.72 | 63.0 | 4.32e-01 | 98.1% | 34.8% |
| 3eeeA00 | 3.90.1520.10 | Alpha Beta › Alpha-Beta Complex › H-NOX domain › H-NOX domain | 0.70 | 61.0 | 4.19e-01 | 100.0% | 31.9% |
| 3g0tA01 | 3.90.1150.100 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › | 0.70 | 60.0 | 4.33e-01 | 100.0% | 96.9% |
| 2z3xA00 | 6.10.10.80 | Special › Helix non-globular › Helicase, Ruva Protein; domain 3 › Small, acid-soluble spore protein, alpha/beta type-like | 0.69 | 49.0 | 4.82e-01 | 75.5% | 71.4% |
| 2ef8A00 | 1.10.260.40 | Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains | 0.68 | 57.0 | 4.93e-01 | 94.3% | 76.2% |
| 1vw4801 | 1.10.1200.10 | Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › ACP-like | 0.67 | 56.0 | 5.16e-01 | 100.0% | 89.0% |
| 2cgqA00 | 1.10.1200.10 | Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › ACP-like | 0.67 | 57.0 | 5.14e-01 | 98.1% | 93.2% |
| 2om6A02 | 1.10.150.400 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › | 0.67 | 58.0 | 5.13e-01 | 100.0% | 83.5% |
| 4dqlA03 | 3.40.50.80 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nucleotide-binding domain of ferredoxin-NADP reductase (FNR) module | 0.67 | 55.0 | 3.89e-01 | 90.6% | 86.3% |
| 4wd1A02 | 3.30.300.30 | Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › ANL, C-terminal domain | 0.66 | 58.0 | 4.40e-01 | 100.0% | 64.8% |
| 1kkhA01 | 3.30.230.10 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › | 0.66 | 54.0 | 3.80e-01 | 96.2% | 49.2% |
| 6wilA02 | 3.10.20.310 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › membrane protein fhac | 0.65 | 55.0 | 4.78e-01 | 98.1% | 73.8% |
| 2kmfA01 | 1.20.58.810 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Photosystem II Pbs27 | 0.64 | 46.0 | 3.77e-01 | 77.4% | 87.3% |
| 1f20A01 | 3.40.50.80 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nucleotide-binding domain of ferredoxin-NADP reductase (FNR) module | 0.64 | 52.0 | 3.72e-01 | 90.6% | 87.1% |
| 1a41A02 | 1.20.120.380 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Type 1-topoisomerase catalytic fragment, domain 2 | 0.63 | 51.0 | 4.36e-01 | 100.0% | 54.3% |
| 2yhsA01 | 1.20.120.140 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › SRP54, nucleotide-binding domain | 0.62 | 51.0 | 4.28e-01 | 96.2% | 70.1% |
| 3c4rA00 | 1.10.3600.10 | Mainly Alpha › Orthogonal Bundle › uncharacterized protein encoded by cryptic prophage fold › Putative bacterial toxin ydaT | 0.61 | 47.0 | 3.61e-01 | 84.9% | 58.1% |
| 3itqA01 | 2.60.120.620 | Mainly Beta › Sandwich › Jelly Rolls › q2cbj1_9rhob like domain | 0.60 | 52.0 | 3.62e-01 | 98.1% | 87.0% |
| 3icxA01 | 1.10.287.660 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.59 | 40.0 | 3.60e-01 | 73.6% | 49.3% |
| 3cz6A01 | 1.20.120.1480 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › | 0.59 | 51.0 | 4.13e-01 | 100.0% | 81.7% |
| 3hr0B01 | 1.10.287.1060 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like | 0.58 | 39.0 | 3.46e-01 | 75.5% | 46.8% |
| 2hp7A00 | 3.40.1550.10 | Alpha Beta › 3-Layer(aba) Sandwich › Chemotaxis protein chec › CheC-like | 0.58 | 48.0 | 3.48e-01 | 100.0% | 66.5% |
| 3q9dB01 | 1.20.58.1050 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.58 | 47.0 | 4.13e-01 | 98.1% | 74.2% |
| 3lcnB00 | 1.10.340.40 | Mainly Alpha › Orthogonal Bundle › Endonuclease III; domain 1 › Nuclear abundant poly(A) RNA-bind protein 2, N-terminal domain | 0.58 | 49.0 | 4.12e-01 | 100.0% | 80.4% |
| 2a3vB01 | 1.10.150.130 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Tyrosine recombinase, N-terminal domain | 0.58 | 48.0 | 4.15e-01 | 100.0% | 56.4% |
| 4p6bB00 | 3.40.710.10 | Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily | 0.57 | 50.0 | 3.03e-01 | 100.0% | 57.2% |
| 2c35A00 | 1.20.1250.40 | Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › RNA Polymerase II, Rpb4 subunit | 0.57 | 41.0 | 3.11e-01 | 77.4% | 50.8% |
| 5efrA02 | 3.10.20.310 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › membrane protein fhac | 0.57 | 48.0 | 4.43e-01 | 100.0% | 87.7% |
| 2efxF00 | 3.40.710.10 | Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily | 0.57 | 48.0 | 3.08e-01 | 100.0% | 54.7% |
| 2nsaA00 | 1.10.3120.10 | Mainly Alpha › Orthogonal Bundle › Trigger factor, domain 2 › Trigger factor, C-terminal domain | 0.57 | 46.0 | 3.34e-01 | 96.2% | 61.1% |
| 2m4eA00 | 1.20.120.1930 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Uncharacterised protein PF16691 family | 0.56 | 45.0 | 3.95e-01 | 92.5% | 69.8% |
| 4e6nA02 | 6.10.140.1010 | Special › Helix non-globular › Helix Hairpins › | 0.56 | 39.0 | 3.62e-01 | 100.0% | 59.1% |
| 1tuoA03 | 3.40.120.10 | Alpha Beta › 3-Layer(aba) Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 3 › Alpha-D-Glucose-1,6-Bisphosphate, subunit A, domain 3 | 0.55 | 43.0 | 3.49e-01 | 92.5% | 86.3% |
| 4okvE00 | 6.10.140.1890 | Special › Helix non-globular › Helix Hairpins › | 0.55 | 39.0 | 3.71e-01 | 77.4% | 92.3% |
| 1s4eG02 | 3.30.70.890 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › GHMP kinase, C-terminal domain | 0.55 | 45.0 | 3.39e-01 | 100.0% | 68.6% |
| 7aj9A01 | 1.10.101.10 | Mainly Alpha › Orthogonal Bundle › Muramoyl-pentapeptide Carboxypeptidase; domain 1 › PGBD-like superfamily/PGBD | 0.54 | 44.0 | 4.17e-01 | 96.2% | 77.6% |
| 4zocA02 | 3.40.50.1700 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycoside hydrolase family 3 C-terminal domain | 0.54 | 46.0 | 3.02e-01 | 100.0% | 55.1% |
| 7ml0M01 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.53 | 42.0 | 3.77e-01 | 96.2% | 65.9% |
| 1dk5A04 | 1.10.220.10 | Mainly Alpha › Orthogonal Bundle › Annexin V; domain 1 › Annexin | 0.52 | 42.0 | 3.89e-01 | 90.6% | 87.1% |
ECOD (52)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4992012 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.82 | 68.0 | 6.59e-01 | 100.0% | 81.7% |
| 3759371 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.80 | 51.0 | 4.24e-01 | 100.0% | 39.3% |
| 5008115 | 101.1.1.542 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › DUF790 | 0.79 | 58.0 | 6.17e-01 | 94.3% | 93.3% |
| 3398490 | 101.1.1.112 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › MADF_DNA_bdg | 0.79 | 66.0 | 6.17e-01 | 100.0% | 75.4% |
| 3652636 | 101.1.1.295 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › HTH_70 | 0.79 | 69.0 | 5.98e-01 | 100.0% | 63.7% |
| 3388840 | 101.1.1.112 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › MADF_DNA_bdg | 0.76 | 68.0 | 5.70e-01 | 100.0% | 58.9% |
| 3404621 | 101.1.1.112 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › MADF_DNA_bdg | 0.76 | 68.0 | 5.68e-01 | 100.0% | 58.9% |
| 3390891 | 101.1.1.112 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › MADF_DNA_bdg | 0.76 | 67.0 | 5.63e-01 | 100.0% | 58.9% |
| 3393967 | 101.1.1.112 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › MADF_DNA_bdg | 0.75 | 67.0 | 5.52e-01 | 100.0% | 55.8% |
| 5039327 | 6102.1.1.0 ↗ | alpha arrays › N-terminal domain of segregation and condensation protein A, ScpA › N-terminal domain of segregation and condensation protein A, ScpA › N-terminal domain of segregation and condensation protein A, ScpA | 0.75 | 65.0 | 4.74e-01 | 100.0% | 54.0% |
| 3415948 | 101.1.1.112 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › MADF_DNA_bdg | 0.74 | 65.0 | 5.39e-01 | 100.0% | 55.8% |
| 4955389 | 101.1.1.542 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › DUF790 | 0.73 | 61.0 | 6.06e-01 | 100.0% | 92.7% |
| 3958582 | 101.1.1.282 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › DUF222 | 0.73 | 61.0 | 4.51e-01 | 100.0% | 34.7% |
| 3308996 | 101.1.1.121 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-bind_3 | 0.73 | 63.0 | 5.79e-01 | 100.0% | 75.7% |
| 3499057 | 304.137.1.0 ↗ | a+b two layers › Alpha-beta plaits › NOL1/NOP2/sun N-terminal ferredoxin-like domain › NOL1/NOP2/sun N-terminal ferredoxin-like domain | 0.72 | 60.0 | 4.02e-01 | 90.6% | 27.2% |
| 3483479 | 101.8.1.0 ↗ | alpha arrays › HTH › An anticodon-binding domain of class I aminoacyl-tRNA synthetases › An anticodon-binding domain of class I aminoacyl-tRNA synthetases | 0.72 | 62.0 | 4.31e-01 | 100.0% | 30.3% |
| 5058906 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.72 | 59.0 | 5.18e-01 | 98.1% | 61.3% |
| 3476029 | 873.1.1.5 ↗ | a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain › HNOB | 0.71 | 63.0 | 4.31e-01 | 100.0% | 30.8% |
| 3643141 | 101.1.1.121 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-bind_3 | 0.70 | 61.0 | 5.36e-01 | 100.0% | 68.8% |
| 3293469 | 101.1.1.121 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-bind_3 | 0.70 | 57.0 | 5.57e-01 | 100.0% | 85.0% |
| 3958903 | 186.1.1.0 ↗ | alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N | 0.69 | 58.0 | 4.76e-01 | 100.0% | 59.0% |
| 4660104 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.69 | 58.0 | 5.55e-01 | 100.0% | 84.6% |
| 3455132 | 101.1.1.121 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-bind_3 | 0.68 | 60.0 | 4.63e-01 | 100.0% | 46.7% |
| 3996818 | 108.1.1.0 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand | 0.68 | 58.0 | 4.87e-01 | 100.0% | 75.8% |
| 4567935 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.67 | 58.0 | 5.46e-01 | 100.0% | 83.1% |
| 3954906 | 378.1.1.23 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › DUF222 | 0.66 | 58.0 | 4.15e-01 | 100.0% | 34.2% |
| 4889780 | 6076.1.1.2 ↗ | alpha arrays › Catalytic cysteine domain in ubiquitin-activating enzyme › Catalytic cysteine domain in ubiquitin-activating enzyme › Catalytic cysteine domain in ubiquitin-activating enzyme › E1_4HB | 0.66 | 49.0 | 4.74e-01 | 88.7% | 71.4% |
| 3740332 | 1128.1.1.0 ↗ | alpha bundles › LYR protein › LYR protein › LYR protein | 0.65 | 45.0 | 3.89e-01 | 71.7% | 57.5% |
| 3642648 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.65 | 53.0 | 4.74e-01 | 100.0% | 65.9% |
| 4028137 | 101.1.1.418 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › FF_PRPF40A | 0.64 | 50.0 | 5.03e-01 | 98.1% | 87.3% |
| 4029664 | 108.1.1.12 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand › p25-alpha | 0.64 | 54.0 | 4.58e-01 | 100.0% | 64.2% |
| 3415514 | 132.1.1.2 ↗ | alpha bundles › ACP-like › Acyl-carrier protein (ACP) › Acyl-carrier protein (ACP) › Ribosomal_L50 | 0.63 | 53.0 | 4.42e-01 | 100.0% | 58.3% |
| 3230607 | 2003.1.9.1 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Activating enzymes of the ubiquitin-like proteins › ThiF | 0.63 | 53.0 | 3.10e-01 | 100.0% | 26.9% |
| 3389823 | 108.1.1.0 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand | 0.63 | 45.0 | 3.36e-01 | 75.5% | 36.1% |
| 3990854 | 192.7.1.0 ↗ | alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm | 0.63 | 46.0 | 3.90e-01 | 100.0% | 46.7% |
| 4945368 | 181.1.1.0 ↗ | alpha bundles › Domain of the SRP/SRP receptor G proteins-like › Domain of the SRP/SRP receptor G-proteins › Domain of the SRP/SRP receptor G-proteins | 0.63 | 52.0 | 4.61e-01 | 96.2% | 66.3% |
| 3946046 | 101.1.2.52 ↗ | alpha arrays › HTH › HTH › winged helix domain › KicB | 0.62 | 50.0 | 4.68e-01 | 100.0% | 77.3% |
| 4515597 | 1189.1.1.0 ↗ | alpha bundles › VSG (variant surface glycoprotein) N-terminal domain and haptoglobin-hemoglobin receptor › VSG (variant surface glycoprotein) N-terminal domain and haptoglobin-hemoglobin receptor › VSG (variant surface glycoprotein) N-terminal domain and haptoglobin-hemoglobin receptor | 0.62 | 45.0 | 2.79e-01 | 79.2% | 73.3% |
| 3659655 | 10.12.1.78 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › JmjN | 0.62 | 50.0 | 3.16e-01 | 88.7% | 38.5% |
| 3802293 | 109.4.1.2064 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, DYW_deaminase, E_motif, TPR_24 | 0.60 | 46.0 | 2.75e-01 | 88.7% | 11.1% |
| 3958705 | 191.1.1.18 ↗ | alpha bundles › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › TetR_C_14 | 0.59 | 52.0 | 3.95e-01 | 100.0% | 83.6% |
| 5014005 | 614.1.1.0 ↗ | alpha duplicates or obligate multimers › L27 domain › L27 domain › L27 domain | 0.59 | 51.0 | 4.50e-01 | 98.1% | 83.7% |
| 3329354 | 109.4.1.420 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR | 0.58 | 45.0 | 3.08e-01 | 92.5% | 21.9% |
| 4942714 | 604.39.1.0 ↗ | alpha bundles › Spectrin repeat-like › S-component of energy-coupling factor (ECF) transporters › S-component of energy-coupling factor (ECF) transporters | 0.58 | 46.0 | 3.49e-01 | 96.2% | 42.6% |
| 299159 | 186.1.1.4 ↗ | alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Phage_int_SAM_4 | 0.58 | 48.0 | 4.04e-01 | 100.0% | 51.5% |
| 223746 | 6099.1.1.1 ↗ | alpha arrays › Uncharacterized protein VV2_0175 › Uncharacterized protein VV2_0175 › Uncharacterized protein VV2_0175 › DUF5062 | 0.56 | 45.0 | 3.95e-01 | 92.5% | 69.8% |
| 3627903 | 5.1.11.23 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 9-bladed › Beta-prop_HPS5 | 0.54 | 45.0 | 2.64e-01 | 94.3% | 88.0% |
| 3304140 | 4015.1.1.1 ↗ | alpha complex topology › alpha-helical domain in sec1/munc18-like (SM) proteins › alpha-helical domain in sec1/munc18-like (SM) proteins › alpha-helical domain in sec1/munc18-like (SM) proteins › Sec1 | 0.54 | 46.0 | 2.98e-01 | 98.1% | 80.4% |
| 3908308 | 101.1.4.41 ↗ | alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HTH_Tnp_4 | 0.53 | 43.0 | 4.07e-01 | 92.5% | 87.7% |
| 3720014 | 650.1.1.1 ↗ | alpha bundles › Chaperone J-domain › Chaperone J-domain › Chaperone J-domain › DnaJ | 0.53 | 44.0 | 4.07e-01 | 96.2% | 71.4% |
| 4023501 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.52 | 41.0 | 3.26e-01 | 92.5% | 39.2% |
| 3404305 | 109.3.1.130 ↗ | alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › TRPM2 | 0.51 | 41.0 | 2.67e-01 | 100.0% | 24.6% |