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MG543995.1__ATW69292.1__CJF57_00129__00129
Bact-VirMG543995.1__ATW69292.1__CJF57_00129__00129
Identity
- Accession:
- MG543995 ↗
- Kingdom:
- phage
Quality
93.5
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 43-139
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF16199.11 best | Radical_SAM_C | 97.5 | 5.60e-28 | 87.6% | 98.8% |
CATH (23)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3rjtA00 | 3.40.50.1110 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › SGNH hydrolase | 0.62 | 52.0 | 4.05e-01 | 95.9% | 42.1% |
| 2hisA00 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.60 | 52.0 | 3.65e-01 | 95.9% | 31.7% |
| 4htyA00 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.60 | 52.0 | 3.62e-01 | 96.9% | 28.8% |
| 1jphA00 | 3.20.20.210 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › | 0.60 | 51.0 | 3.53e-01 | 95.9% | 53.2% |
| 2jepB00 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.59 | 52.0 | 3.54e-01 | 97.9% | 28.7% |
| 4v1xA02 | 3.20.20.140 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Metal-dependent hydrolases | 0.59 | 46.0 | 3.17e-01 | 85.6% | 26.7% |
| 4fdiA01 | 3.40.720.10 | Alpha Beta › 3-Layer(aba) Sandwich › Alkaline Phosphatase, subunit A › Alkaline Phosphatase, subunit A | 0.58 | 48.0 | 3.28e-01 | 93.8% | 39.8% |
| 1yb0B00 | 3.40.80.10 | Alpha Beta › 3-Layer(aba) Sandwich › Lysozyme-like › Peptidoglycan recognition protein-like | 0.57 | 48.0 | 4.05e-01 | 90.7% | 88.1% |
| 4ov4A01 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.57 | 44.0 | 3.23e-01 | 85.6% | 29.5% |
| 2x0kA01 | 3.40.50.620 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs | 0.56 | 40.0 | 3.26e-01 | 92.8% | 38.7% |
| 4w8bA00 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.55 | 47.0 | 3.24e-01 | 97.9% | 43.8% |
| 1xrsA00 | 3.20.20.440 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › D-Lysine 5,6-aminomutase alpha subunit | 0.55 | 46.0 | 2.90e-01 | 91.8% | 23.8% |
| 4xr9B01 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.55 | 39.0 | 3.09e-01 | 96.9% | 34.6% |
| 1ns5B00 | 3.40.1280.10 | Alpha Beta › 3-Layer(aba) Sandwich › Alpha/beta knot › SPOUT methyltransferase, trefoil knot domain | 0.55 | 43.0 | 3.75e-01 | 89.7% | 54.5% |
| 1ekeA01 | 3.30.420.10 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H | 0.54 | 44.0 | 3.70e-01 | 90.7% | 77.8% |
| 3op1A01 | 3.40.50.620 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs | 0.53 | 37.0 | 3.09e-01 | 84.5% | 38.9% |
| 3lmmA01 | 3.30.950.30 | Alpha Beta › 2-Layer Sandwich › Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 › Schlafen, AAA domain | 0.53 | 46.0 | 4.00e-01 | 96.9% | 74.2% |
| 4qqrB00 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.52 | 40.0 | 2.98e-01 | 83.5% | 64.9% |
| 2npnA01 | 3.40.1010.10 | Alpha Beta › 3-Layer(aba) Sandwich › Cobalt-precorrin-4 Transmethylase; domain 1 › Tetrapyrrole methylase, N-terminal domain | 0.52 | 43.0 | 3.93e-01 | 91.8% | 72.9% |
| 2zm5B01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.51 | 43.0 | 3.27e-01 | 91.8% | 39.1% |
| 2grjA00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.51 | 40.0 | 3.26e-01 | 83.5% | 52.5% |
| 2gsoA01 | 3.40.720.10 | Alpha Beta › 3-Layer(aba) Sandwich › Alkaline Phosphatase, subunit A › Alkaline Phosphatase, subunit A | 0.50 | 43.0 | 3.16e-01 | 96.9% | 73.1% |
| 4p47A00 | 3.40.190.170 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Bacterial extracellular solute-binding protein, family 7 | 0.50 | 38.0 | 2.68e-01 | 81.4% | 75.6% |
ECOD (39)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3589076 | 2002.1.1.126 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM,Radical_SAM_C | 1.00 | 96.0 | 6.38e-01 | 99.0% | 31.3% |
| 3604553 | 2002.1.1.126 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM,Radical_SAM_C | 0.94 | 90.0 | 6.00e-01 | 100.0% | 31.1% |
| 5055423 | 2002.1.1.452 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM_C | 0.94 | 89.0 | 5.89e-01 | 100.0% | 29.0% |
| 3976773 | 2002.1.1.126 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM,Radical_SAM_C | 0.93 | 88.0 | 5.92e-01 | 100.0% | 31.1% |
| 5036110 | 2002.1.1.452 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM_C | 0.88 | 80.0 | 5.13e-01 | 94.8% | 24.5% |
| 5049947 | 2002.1.1.452 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM_C | 0.87 | 77.0 | 4.96e-01 | 92.8% | 24.3% |
| 3188934 | 2002.1.1.126 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM,Radical_SAM_C | 0.86 | 78.0 | 5.22e-01 | 96.9% | 28.6% |
| 5028848 | 2002.1.1.452 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM_C | 0.86 | 78.0 | 5.12e-01 | 95.9% | 26.2% |
| 4155041 | 2002.1.1.126 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM,Radical_SAM_C | 0.86 | 75.0 | 5.09e-01 | 91.8% | 29.2% |
| 4928034 | 2002.1.1.452 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM_C | 0.86 | 78.0 | 5.04e-01 | 96.9% | 24.2% |
| 3605809 | 2002.1.1.126 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM,Radical_SAM_C | 0.86 | 75.0 | 5.04e-01 | 94.8% | 27.2% |
| 3497112 | 2002.1.1.0 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels | 0.85 | 77.0 | 5.12e-01 | 96.9% | 27.2% |
| 4943053 | 2002.1.1.452 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM_C | 0.85 | 73.0 | 4.69e-01 | 90.7% | 22.8% |
| 3621115 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.85 | 77.0 | 4.94e-01 | 96.9% | 23.5% |
| 4937657 | 2002.1.1.120 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM | 0.85 | 73.0 | 4.74e-01 | 90.7% | 24.1% |
| 3592235 | 2002.1.1.0 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels | 0.84 | 77.0 | 5.12e-01 | 96.9% | 28.5% |
| 4029214 | 2002.1.1.126 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM,Radical_SAM_C | 0.82 | 76.0 | 5.03e-01 | 100.0% | 29.4% |
| 5075149 | 2002.1.1.57 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › URO-D | 0.61 | 48.0 | 3.25e-01 | 85.6% | 37.1% |
| 4942754 | 2496.1.1.0 ↗ | a/b three-layered sandwiches › SpoIIaa-like › SpoIIaa-like › SpoIIaa-like | 0.59 | 43.0 | 4.48e-01 | 97.9% | 87.1% |
| 5076823 | 2002.1.1.57 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › URO-D | 0.59 | 47.0 | 3.21e-01 | 85.6% | 38.7% |
| 3190461 | 2002.1.1.0 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels | 0.58 | 45.0 | 3.14e-01 | 88.7% | 24.6% |
| 2391164 | 2002.1.1.45 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Glyco_hydro_31_2nd | 0.57 | 48.0 | 3.27e-01 | 94.8% | 41.3% |
| 3290145 | 7588.1.1.2 ↗ | a/b three-layered sandwiches › NadA-like/4-hydroxy-3-methylbut-2-enyl diphosphate reductase › NadA-like/4-hydroxy-3-methylbut-2-enyl diphosphate reductase › NadA-like/4-hydroxy-3-methylbut-2-enyl diphosphate reductase › NadA | 0.56 | 42.0 | 4.16e-01 | 90.7% | 73.3% |
| 4927954 | 2006.1.5.1 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › Arginase/deacetylase › Arginase | 0.55 | 47.0 | 3.54e-01 | 97.9% | 36.5% |
| 4510275 | 2002.1.1.57 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › URO-D | 0.55 | 48.0 | 3.31e-01 | 95.9% | 32.9% |
| 5037570 | 2002.1.1.45 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Glyco_hydro_31_2nd | 0.55 | 47.0 | 3.24e-01 | 95.9% | 50.4% |
| 3665075 | 7514.1.1.1 ↗ | a/b three-layered sandwiches › Ferredoxin reductase-like, C-terminal NADP-linked domain › Ferredoxin reductase-like, C-terminal NADP-linked domain › Ferredoxin reductase-like, C-terminal NADP-linked domain › NAD_binding_1 | 0.54 | 45.0 | 3.95e-01 | 90.7% | 96.6% |
| 4971900 | 2002.1.1.0 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels | 0.54 | 46.0 | 3.26e-01 | 94.8% | 29.8% |
| 5051856 | 7528.1.1.3 ↗ | a/b three-layered sandwiches › Phosphoglucomutase, first 3 domains › Phosphoglucomutase, first 3 domains › Phosphoglucomutase, first 3 domains › PGM_PMM_III | 0.54 | 39.0 | 3.60e-01 | 82.5% | 58.4% |
| 1498183 | 2003.1.1.45 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › UDPG_MGDP_dh_N | 0.54 | 39.0 | 3.07e-01 | 96.9% | 34.9% |
| 5023562 | 2002.1.1.74 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Meth_synt_2 | 0.54 | 46.0 | 3.27e-01 | 95.9% | 30.9% |
| 5064933 | 2004.1.1.141 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › CTP_synth_N | 0.53 | 44.0 | 3.52e-01 | 93.8% | 50.0% |
| 5078827 | 2006.1.5.1 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › Arginase/deacetylase › Arginase | 0.52 | 45.0 | 3.23e-01 | 95.9% | 58.0% |
| 5072965 | 2002.1.1.57 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › URO-D | 0.51 | 44.0 | 3.03e-01 | 95.9% | 30.1% |
| 5073025 | 2002.1.1.57 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › URO-D | 0.51 | 43.0 | 2.98e-01 | 94.8% | 31.8% |
| 5076715 | 2004.1.1.146 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ATPase | 0.51 | 42.0 | 3.22e-01 | 92.8% | 49.0% |
| 4937120 | 7515.1.1.0 ↗ | a/b three-layered sandwiches › Alkaline phosphatase-like › Alkaline phosphatase-like › Alkaline phosphatase-like | 0.51 | 42.0 | 3.17e-01 | 92.8% | 64.7% |
| 3519788 | 7558.1.1.11 ↗ | a/b three-layered sandwiches › Glycerol-3-phosphate (1)-acyltransferase › Glycerol-3-phosphate (1)-acyltransferase › Glycerol-3-phosphate (1)-acyltransferase › Acyltransferase,Acyltransf_C | 0.51 | 43.0 | 3.20e-01 | 94.8% | 45.4% |
| 3544162 | 2006.1.6.22 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › vWA-like › DUF5920 | 0.50 | 42.0 | 3.49e-01 | 92.8% | 73.3% |