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MG543995.1__ATW69313.1__CJF57_00150__00150

Bact-Vir

MG543995.1__ATW69313.1__CJF57_00150__00150

Identity

Accession:
MG543995 ↗
Kingdom:
phage

Quality

92.9 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Staphylococcus_phage_UPMK_1

TaxID: 2025806

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 41-109
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF03486.21 best HI0933_like 82.1 6.20e-23 84.1% 21.4%
CATH (7)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2i0zA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.98 90.0 5.80e-01 95.7% 25.4%
2gqfA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.88 77.0 5.05e-01 92.8% 33.3%
1fcdA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.72 61.0 4.41e-01 92.8% 77.7%
5yjwA00 3.50.50.100 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › 0.66 59.0 3.56e-01 100.0% 52.4%
4h7uA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.64 53.0 3.62e-01 95.7% 79.7%
2qgqA01 3.80.30.20 Alpha Beta › Alpha-Beta Horseshoe › pyruvate-formate lyase- activating enzyme › tm_1862 like domain 0.64 51.0 3.60e-01 87.0% 49.5%
5kmpB00 3.50.50.100 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › 0.57 48.0 3.07e-01 100.0% 56.5%
ECOD (22)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
None — 0.97 91.0 5.85e-01 97.1% 36.5%
None — 0.95 83.0 5.41e-01 91.3% 35.2%
3972982 2003.1.2.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain 0.93 77.0 5.01e-01 85.5% 33.9%
3660366 2003.1.2.20 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › HI0933_like 0.92 84.0 5.29e-01 95.7% 22.0%
None — 0.91 82.0 5.25e-01 94.2% 78.5%
4332395 2003.1.2.20 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › HI0933_like 0.91 77.0 5.05e-01 88.4% 33.9%
4975047 2003.1.2.20 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › HI0933_like 0.91 79.0 5.12e-01 91.3% 32.6%
None — 0.90 81.0 5.16e-01 94.2% 77.1%
None — 0.89 78.0 5.11e-01 91.3% 33.5%
None — 0.87 75.0 4.91e-01 89.9% 34.3%
None — 0.86 75.0 4.88e-01 91.3% 31.6%
None — 0.85 78.0 5.11e-01 97.1% 35.2%
3969986 2003.1.2.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain 0.85 78.0 5.23e-01 98.6% 36.2%
None — 0.76 65.0 4.09e-01 97.1% 71.1%
None — 0.73 63.0 3.88e-01 97.1% 77.0%
3958722 2003.1.2.7 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_2 0.70 60.0 4.27e-01 92.8% 44.6%
3962925 244.1.1.9 ↗ a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C › GMC_oxred_C 0.70 57.0 4.41e-01 89.9% 84.5%
3638947 244.1.1.9 ↗ a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C › GMC_oxred_C 0.67 56.0 3.89e-01 97.1% 79.6%
3686219 244.1.1.9 ↗ a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C › GMC_oxred_C 0.67 53.0 3.72e-01 91.3% 53.9%
3414009 2003.1.2.2 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › GMC_oxred_N 0.65 56.0 3.71e-01 100.0% 74.2%
5058428 2002.1.1.120 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM 0.58 46.0 3.21e-01 89.9% 85.3%
3596194 109.50.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › Pre-mRNA-splicing factor 38A › Pre-mRNA-splicing factor 38A 0.58 47.0 3.37e-01 89.9% 87.0%