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MG557979.1__AUG84734.1__Lpa804_163__00085

Bact-Vir

MG557979.1__AUG84734.1__Lpa804_163__00085

Identity

Accession:
MG557979 ↗
Kingdom:
phage

Quality

73.9 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Herelleviridae› Harbinvirus› Lactobacillus_phage_Lpa804

TaxID: 2059850

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 1-67
PDB
Domain cluster: rep: DQ535032.1__ABG21617.1__KSY1p074__00074__D138-213
CATH (19)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4yibA01 1.10.530.10 Mainly Alpha › Orthogonal Bundle › Lysozyme › 0.82 74.0 5.56e-01 100.0% 56.3%
4c5fA02 1.10.530.10 Mainly Alpha › Orthogonal Bundle › Lysozyme › 0.81 72.0 5.36e-01 100.0% 60.1%
3bkhA02 1.10.530.10 Mainly Alpha › Orthogonal Bundle › Lysozyme › 0.80 71.0 5.18e-01 100.0% 57.1%
1qsaA03 1.10.530.10 Mainly Alpha › Orthogonal Bundle › Lysozyme › 0.79 70.0 5.19e-01 100.0% 53.8%
3zvqA00 1.10.530.10 Mainly Alpha › Orthogonal Bundle › Lysozyme › 0.78 54.0 5.33e-01 71.6% 80.0%
7k5cB01 1.10.530.10 Mainly Alpha › Orthogonal Bundle › Lysozyme › 0.72 63.0 4.83e-01 100.0% 57.2%
4gewA01 1.10.8.10 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain 0.68 43.0 4.12e-01 100.0% 55.8%
3ucsA00 1.10.1660.10 Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › 0.64 44.0 3.89e-01 100.0% 49.5%
1aipH03 1.10.8.10 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain 0.63 37.0 4.03e-01 100.0% 73.1%
5d8cA00 1.10.1660.10 Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › 0.62 46.0 3.72e-01 100.0% 42.1%
3w0lD01 1.10.8.1080 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.62 43.0 3.80e-01 98.5% 48.5%
6k8nA02 1.10.290.10 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; domain 4 › Topoisomerase I, domain 4 0.59 44.0 3.62e-01 79.1% 95.8%
2zhgA00 1.10.1660.10 Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › 0.57 42.0 3.45e-01 100.0% 43.0%
3h4cA02 1.10.472.110 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › 0.57 41.0 3.65e-01 100.0% 50.0%
3gp4B00 1.10.1660.10 Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › 0.55 41.0 3.31e-01 100.0% 40.8%
2kebA00 1.10.8.530 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › DNA polymerase alpha-primase, subunit B, N-terminal domain 0.55 39.0 3.81e-01 98.5% 66.7%
1cy9A01 1.10.290.10 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; domain 4 › Topoisomerase I, domain 4 0.54 40.0 3.38e-01 80.6% 89.8%
1fkaG00 1.10.455.10 Mainly Alpha › Orthogonal Bundle › Ribosomal Protein S7 › Ribosomal protein S7/S5 0.52 46.0 3.72e-01 100.0% 61.7%
3umbA02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.51 39.0 3.72e-01 83.6% 91.1%
ECOD (33)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4455133 235.1.1.9 ↗ a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › SLT 0.93 89.0 7.98e-01 100.0% 77.3%
3971115 235.1.1.9 ↗ a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › SLT 0.85 79.0 5.71e-01 100.0% 53.5%
3260862 235.1.1.9 ↗ a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › SLT 0.85 78.0 6.52e-01 100.0% 70.0%
3964630 235.1.1.9 ↗ a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › SLT 0.84 77.0 5.65e-01 100.0% 51.8%
3205219 235.1.1.0 ↗ a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like 0.84 76.0 5.57e-01 100.0% 54.7%
3254511 235.1.1.1 ↗ a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › Lys 0.83 77.0 6.51e-01 100.0% 74.3%
5028353 235.1.1.9 ↗ a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › SLT 0.82 75.0 5.41e-01 100.0% 58.9%
4431057 235.1.1.9 ↗ a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › SLT 0.82 75.0 5.74e-01 100.0% 69.0%
3985073 235.1.1.9 ↗ a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › SLT 0.81 72.0 5.74e-01 100.0% 68.9%
1175858 235.1.1.9 ↗ a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › SLT 0.80 71.0 5.13e-01 100.0% 55.0%
4164050 235.1.1.9 ↗ a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › SLT 0.79 72.0 5.01e-01 100.0% 42.4%
3279121 235.1.1.9 ↗ a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › SLT 0.79 72.0 6.37e-01 100.0% 84.0%
4010532 235.1.1.9 ↗ a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › SLT 0.79 71.0 5.69e-01 100.0% 76.9%
3941811 235.1.1.32 ↗ a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › SLT, PF27553 0.79 71.0 5.22e-01 100.0% 54.7%
4321901 235.1.1.9 ↗ a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › SLT 0.78 70.0 5.07e-01 100.0% 47.0%
4135695 235.1.1.0 ↗ a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like 0.78 72.0 6.74e-01 100.0% 82.7%
3582448 235.1.1.9 ↗ a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › SLT 0.77 68.0 5.51e-01 100.0% 63.1%
4995668 235.1.1.9 ↗ a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › SLT 0.76 61.0 4.93e-01 86.6% 70.7%
3970721 235.1.1.0 ↗ a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like 0.73 64.0 4.76e-01 100.0% 61.7%
3226566 103.1.1.0 ↗ alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain 0.65 38.0 4.03e-01 100.0% 65.0%
4982319 2006.1.1.1 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › Hydrolase 0.60 44.0 3.00e-01 95.5% 23.3%
3657750 108.1.1.0 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand 0.59 49.0 4.25e-01 95.5% 99.1%
4007855 101.15.1.12 ↗ alpha arrays › HTH › LysM domain › LysM domain › PF30403 0.59 38.0 3.54e-01 95.5% 52.9%
3800318 108.1.1.26 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_5 0.57 39.0 3.87e-01 98.5% 66.7%
4010451 3788.1.1.15 ↗ alpha bundles › Viral accessory protein x (Vpx) / viral protein r (Vpr) › Viral accessory protein x (Vpx) / viral protein r (Vpr) › Viral accessory protein x (Vpx) / viral protein r (Vpr) › PF27202 0.56 44.0 4.26e-01 98.5% 76.0%
3340149 108.1.1.1 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_1 0.56 46.0 4.26e-01 94.0% 91.1%
3734310 148.1.3.0 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.56 39.0 3.53e-01 89.6% 52.6%
3948495 102.2.1.11 ↗ alpha arrays › HhH/H2TH › H2TH › H2TH › PF27202 0.55 48.0 3.97e-01 100.0% 76.8%
3452698 101.1.10.37 ↗ alpha arrays › HTH › HTH › Cyclin-like › PF26138 0.54 41.0 3.71e-01 95.5% 58.9%
4176207 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.53 36.0 2.85e-01 71.6% 34.0%
3427558 101.1.3.12 ↗ alpha arrays › HTH › HTH › tetra-helical, LuxR-like › PF26138 0.53 39.0 3.63e-01 95.5% 61.1%
3469230 101.1.6.27 ↗ alpha arrays › HTH › HTH › TrpR › PF26138 0.52 40.0 3.67e-01 95.5% 63.3%
None — 0.51 40.0 3.57e-01 95.5% 58.6%