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MG575420.1__QDU35653.1__X__00022

Bact-Vir

MG575420.1__QDU35653.1__X__00022

Identity

Accession:
MG575420 ↗
Kingdom:
phage

Quality

88.3 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-52
PDB
Domain cluster: representative
CATH (53)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2q18X01 3.10.330.40 Alpha Beta › Roll › Vcp-like ATPase; Chain A, domain 2 › 0.73 58.0 5.25e-01 90.0% 100.0%
2dk7A00 2.20.70.10 Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › 0.71 52.0 4.68e-01 82.0% 74.0%
8eg0B01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.68 54.0 3.24e-01 88.0% 38.3%
3aihB01 2.70.130.10 Mainly Beta › Distorted Sandwich › Cation-dependent Mannose-6-phosphate Receptor; Chain A › Mannose-6-phosphate receptor binding domain 0.67 52.0 4.12e-01 86.0% 86.9%
3kl7A00 3.60.15.10 Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like 0.67 49.0 3.28e-01 82.0% 97.7%
1w0pA03 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.66 56.0 3.81e-01 96.0% 51.3%
2xzmR01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.65 51.0 3.12e-01 88.0% 39.1%
1d4tA00 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.65 46.0 3.66e-01 76.0% 42.3%
4cc9A00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.65 55.0 3.43e-01 100.0% 85.3%
6iikB00 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.65 54.0 3.31e-01 98.0% 91.3%
3s6pA03 2.60.270.70 Mainly Beta › Sandwich › Mutm (Fpg) Protein; Chain: A, domain 2 › 0.65 45.0 3.34e-01 76.0% 51.4%
5mqrA01 2.120.10.10 Mainly Beta › 6 Propeller › Neuraminidase › 0.65 55.0 3.29e-01 100.0% 80.2%
1k8kC00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.64 54.0 3.30e-01 100.0% 91.8%
3a9gA00 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.64 54.0 3.31e-01 100.0% 88.8%
4nsxA01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.63 54.0 3.32e-01 100.0% 84.8%
1vyhC01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.63 53.0 3.32e-01 100.0% 93.7%
1rwiA00 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.63 53.0 3.43e-01 100.0% 82.0%
4a2lF02 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.63 53.0 3.26e-01 96.0% 66.1%
4g56D00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.62 48.0 3.00e-01 88.0% 45.9%
3jb9K01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.62 47.0 2.99e-01 88.0% 42.0%
3eweA01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.62 47.0 3.09e-01 88.0% 38.4%
1nr0A01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.62 48.0 3.00e-01 88.0% 38.9%
6fcvB00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.62 51.0 3.16e-01 100.0% 84.7%
1r5mA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.61 48.0 2.92e-01 88.0% 23.6%
5kmpB00 3.50.50.100 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › 0.61 47.0 2.85e-01 88.0% 37.5%
4tr6A01 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.61 44.0 3.04e-01 76.0% 67.2%
5ic7A00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.61 50.0 3.13e-01 100.0% 90.0%
4kg0A01 2.60.120.920 Mainly Beta › Sandwich › Jelly Rolls › SPRY domain 0.61 49.0 3.58e-01 94.0% 75.2%
1pguA02 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.61 51.0 3.17e-01 100.0% 93.2%
4o9dA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.59 49.0 2.99e-01 100.0% 85.7%
1k32A02 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.59 49.0 3.03e-01 100.0% 94.3%
2jmbA00 2.40.128.290 Mainly Beta › Beta Barrel › Lipocalin › Uncharacterised protein family Atu4866 0.59 46.0 4.14e-01 94.0% 93.7%
7jl1B01 2.60.120.920 Mainly Beta › Sandwich › Jelly Rolls › SPRY domain 0.59 50.0 3.63e-01 100.0% 74.8%
3gasB02 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.59 41.0 2.88e-01 74.0% 54.8%
3t0pA01 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.58 44.0 3.15e-01 88.0% 50.0%
3pvnA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.58 49.0 3.32e-01 100.0% 50.0%
3ltiA01 3.90.1110.10 Alpha Beta › Alpha-Beta Complex › Dna-directed Rna Polymerase Ii 140kd Polypeptide; Chain: B; domain 3 › RNA polymerase Rpb2, domain 2 0.58 46.0 3.34e-01 94.0% 95.2%
1t6eX01 2.40.70.10 Mainly Beta › Beta Barrel › Cathepsin D, subunit A; domain 1 › Acid Proteases 0.57 48.0 3.40e-01 100.0% 96.6%
4n9jA02 3.30.1120.130 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › 0.57 46.0 3.71e-01 94.0% 97.2%
4gc1A01 2.90.10.10 Mainly Beta › Orthogonal Prism › Agglutinin, subunit A › Bulb-type lectin domain 0.57 42.0 3.41e-01 82.0% 55.8%
3tu3B01 3.30.720.80 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › 0.56 43.0 3.92e-01 90.0% 77.6%
2fjrA02 2.10.109.10 Mainly Beta › Ribbon › Umud Fragment, subunit A › Umud Fragment, subunit A 0.56 42.0 3.42e-01 90.0% 43.4%
4m0wA03 2.60.120.1680 Mainly Beta › Sandwich › Jelly Rolls › 0.56 44.0 3.39e-01 100.0% 35.8%
2k57A00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.56 50.0 4.84e-01 100.0% 89.1%
3k8rA01 3.30.2020.40 Alpha Beta › 2-Layer Sandwich › NE0471 N-terminal domain-like › Uncharacterised protein PF10387, DUF2442 0.55 47.0 4.29e-01 100.0% 70.6%
1g29102 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.54 37.0 3.83e-01 74.0% 88.9%
3asiA01 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.53 42.0 3.01e-01 94.0% 75.8%
3ikhA00 3.40.1190.20 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase 0.53 37.0 2.38e-01 78.0% 28.0%
3ecqA01 2.60.120.870 Mainly Beta › Sandwich › Jelly Rolls › 0.52 45.0 3.12e-01 100.0% 51.9%
6melB01 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.51 44.0 3.17e-01 100.0% 66.5%
3cnwA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.51 45.0 3.24e-01 100.0% 70.9%
2digA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.51 38.0 3.64e-01 94.0% 77.9%
4cswA02 3.40.366.30 Alpha Beta › 3-Layer(aba) Sandwich › Malonyl-Coenzyme A Acyl Carrier Protein; domain 2 › 50S ribosomal protein L16 arginine hydroxylase; Chain A, Domain 2 0.51 39.0 2.77e-01 88.0% 48.9%
ECOD (58)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3968013 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.80 62.0 3.87e-01 84.0% 20.0%
None 0.72 58.0 3.54e-01 90.0% 32.1%
3888295 5.1.5.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › WD40 0.70 56.0 3.36e-01 88.0% 14.1%
4025576 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.69 55.0 3.55e-01 90.0% 44.1%
3767058 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.69 54.0 3.28e-01 88.0% 13.6%
3708814 5.1.4.102 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40_3 0.69 53.0 3.36e-01 88.0% 44.6%
4002544 5.1.4.298 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_ELP1_1st, Beta-prop_ELP1_2nd 0.68 52.0 2.94e-01 84.0% 97.8%
3516622 5.1.4.278 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, BING4CT 0.68 55.0 3.42e-01 90.0% 44.8%
3964935 243.4.1.1 a+b two layers › Cystatin-like › DsbC/DsbG N-terminal domain-like › DsbC/DsbG N-terminal domain-like › DsbC_N 0.68 46.0 4.28e-01 72.0% 56.9%
3660003 5.1.10.8 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 12-bladed › ANAPC4_WD40 0.68 51.0 4.46e-01 86.0% 52.5%
4426204 331.23.1.7 a+b two layers › TBP-like › Integrator IntS9/IntS11 C-terminal domain › Integrator IntS9/IntS11 C-terminal domain › CPSF73-100_C 0.67 45.0 3.80e-01 72.0% 41.2%
4026056 221.1.1.7 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › UBX 0.66 54.0 4.06e-01 92.0% 40.8%
None 0.66 51.0 3.05e-01 88.0% 35.4%
3936774 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.66 50.0 3.05e-01 88.0% 37.3%
3613739 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.65 50.0 2.77e-01 88.0% 12.3%
4458802 6.1.1.0 beta duplicates or obligate multimers › beta-Trefoil › beta-Trefoil › beta-Trefoil 0.65 45.0 3.33e-01 74.0% 35.7%
3928477 77.3.1.4 beta meanders › open-sided beta-meander › CPAP G-box domain › CPAP G-box domain › PF28998 0.65 48.0 3.31e-01 84.0% 22.1%
3236014 219.1.1.3 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.65 54.0 3.34e-01 96.0% 92.0%
5082111 5.1.11.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 9-bladed 0.65 55.0 3.37e-01 100.0% 84.2%
3212893 5.1.3.57 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › IKI3 0.65 56.0 3.37e-01 100.0% 92.2%
3250488 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.64 50.0 2.88e-01 88.0% 23.3%
3659136 5.1.4.21 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Pep3_Vps18 0.64 50.0 3.17e-01 88.0% 31.1%
5000602 4018.1.1.2 a+b two layers › a+b domain in carbohydrate phosphatases › a+b domain in carbohydrate phosphatases › a+b domain in carbohydrate phosphatases › Inositol_P 0.64 44.0 3.17e-01 72.0% 92.9%
3907803 5.1.3.139 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Str_synth, SGL, SSL_N 0.64 53.0 3.28e-01 100.0% 88.6%
3452325 219.1.1.0 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.64 54.0 3.60e-01 92.0% 35.0%
3303112 5.1.2.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed 0.64 49.0 3.85e-01 86.0% 44.5%
3413860 219.1.1.3 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.63 53.0 3.19e-01 96.0% 89.6%
3845396 5.1.4.170 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_EML_2 0.63 48.0 3.02e-01 86.0% 40.6%
3369894 206.1.1.1 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.63 44.0 2.80e-01 74.0% 18.4%
3705916 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.63 49.0 2.90e-01 88.0% 17.8%
4014850 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.62 48.0 2.85e-01 88.0% 51.2%
3741619 5.1.4.258 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › RCC1, RCC1_2 0.62 48.0 2.86e-01 88.0% 22.9%
3928297 10.1.1.0 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.62 52.0 3.60e-01 100.0% 68.2%
4600226 5.1.4.307 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › PF29630 0.62 52.0 3.07e-01 100.0% 94.8%
3715045 292.2.1.0 a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain 0.61 44.0 4.02e-01 78.0% 98.6%
3402686 5.1.4.19 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Coatomer_WDAD 0.61 52.0 3.29e-01 100.0% 96.2%
3788239 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.61 48.0 3.02e-01 90.0% 54.2%
5041549 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.61 47.0 2.98e-01 88.0% 29.5%
3274131 4026.1.1.0 a+b three layers › a+b domain in Rap/Ran-GAP (Pfam 02145) › a+b domain in Rap/Ran-GAP (Pfam 02145) › a+b domain in Rap/Ran-GAP (Pfam 02145) 0.60 51.0 3.87e-01 100.0% 58.1%
3611645 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.60 50.0 3.12e-01 100.0% 84.9%
3582843 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.59 46.0 2.61e-01 90.0% 38.7%
3704678 10.1.1.35 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_3 0.59 49.0 3.48e-01 96.0% 58.2%
3627486 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.59 49.0 2.97e-01 100.0% 89.2%
3621137 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.59 49.0 2.85e-01 100.0% 49.3%
4001490 5.1.5.81 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › WD40, eIF2A 0.59 49.0 2.98e-01 100.0% 80.0%
3806422 247.1.1.38 a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › CPSF73-100_C 0.58 39.0 3.45e-01 72.0% 48.2%
4998726 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.58 45.0 4.02e-01 92.0% 62.5%
4193772 331.1.1.13 a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like › CPSF73-100_C 0.58 39.0 3.43e-01 74.0% 42.4%
3390286 6.1.1.11 beta duplicates or obligate multimers › beta-Trefoil › beta-Trefoil › beta-Trefoil › Fascin 0.58 43.0 3.43e-01 90.0% 99.2%
3562381 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.57 48.0 2.87e-01 100.0% 85.4%
4940665 9.16.1.0 beta barrels › Lipocalins/Streptavidin › Hypothetical protein Atu4866 › Hypothetical protein Atu4866 0.56 43.0 3.88e-01 94.0% 92.7%
3785385 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.56 45.0 3.92e-01 100.0% 92.2%
3959495 219.1.1.8 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › NLPC_P60 0.56 46.0 4.09e-01 98.0% 64.1%
3818428 4.1.1.66 beta barrels › SH3 › SH3 › SH3 › LBR_tudor 0.55 44.0 4.02e-01 100.0% 70.7%
3812322 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.54 40.0 3.57e-01 84.0% 63.7%
4390515 71.1.1.3 beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › LolB 0.54 41.0 3.03e-01 88.0% 75.6%
3898952 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.54 44.0 3.99e-01 98.0% 81.3%
3299832 6.1.1.0 beta duplicates or obligate multimers › beta-Trefoil › beta-Trefoil › beta-Trefoil 0.52 38.0 3.00e-01 92.0% 93.1%