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MG575421.1__QDH85518.1__X__00011

Bact-Vir

MG575421.1__QDH85518.1__X__00011

Identity

Accession:
MG575421 ↗
Kingdom:
phage

Quality

72.0 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Proteus_phage_vB_PmiP_RS51pmB

TaxID: 2250313

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 7-68
PDB
Domain cluster: representative
CATH (50)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1amiA04 3.20.19.10 Alpha Beta › Alpha-Beta Barrel › Aconitase; domain 4 › Aconitase, domain 4 0.71 56.0 3.85e-01 87.1% 80.5%
4qxaB00 2.30.29.230 Mainly Beta › Roll › PH-domain like › 0.68 54.0 4.15e-01 88.7% 83.7%
1jegA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.68 56.0 5.66e-01 100.0% 93.3%
2uvaG09 2.40.128.700 Mainly Beta › Beta Barrel › Lipocalin › 0.66 56.0 4.69e-01 100.0% 85.3%
3j7aF03 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.65 49.0 4.81e-01 100.0% 76.1%
2fhdA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.64 50.0 5.03e-01 100.0% 85.5%
3nixB00 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.64 52.0 3.24e-01 95.2% 38.7%
1y8tA03 2.30.42.10 Mainly Beta › Roll › Pdz3 Domain › PDZ domain 0.62 49.0 4.46e-01 88.7% 83.0%
1ci3M02 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.62 43.0 4.42e-01 80.6% 79.3%
3c96A01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.62 50.0 3.80e-01 95.2% 47.6%
1x6oA02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.62 44.0 4.14e-01 77.4% 64.6%
2b3yA05 3.20.19.10 Alpha Beta › Alpha-Beta Barrel › Aconitase; domain 4 › Aconitase, domain 4 0.61 47.0 3.27e-01 88.7% 87.7%
4u3vA00 3.10.129.110 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Polyketide synthase dehydratase 0.60 47.0 3.19e-01 87.1% 39.7%
4hcsA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.60 45.0 4.44e-01 83.9% 76.1%
3l8kA02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.60 49.0 4.07e-01 96.8% 96.8%
2xklA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.60 50.0 3.93e-01 100.0% 59.1%
2lkoA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.60 47.0 3.80e-01 91.9% 71.7%
3s5wA00 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.60 49.0 3.07e-01 98.4% 41.5%
1vkdA00 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.59 48.0 3.12e-01 95.2% 66.0%
2wtzA02 3.40.1190.10 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Mur-like, catalytic domain 0.59 46.0 3.17e-01 87.1% 84.6%
4tyzA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.59 45.0 3.88e-01 88.7% 84.4%
5h9kA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.58 47.0 3.61e-01 93.5% 64.9%
6aonA02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.57 47.0 3.89e-01 96.8% 97.6%
1icwB00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.57 42.0 4.19e-01 82.3% 81.8%
7bspA01 2.70.150.10 Mainly Beta › Distorted Sandwich › Calcium-transporting ATPase, cytoplasmic transduction domain A › Calcium-transporting ATPase, cytoplasmic transduction domain A 0.57 47.0 3.73e-01 100.0% 77.0%
1z47A03 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.57 38.0 4.10e-01 72.6% 87.8%
1b9mA03 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.57 45.0 4.37e-01 95.2% 80.3%
1kmdA00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.57 39.0 3.20e-01 72.6% 72.6%
2mp1A00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.56 41.0 3.92e-01 80.6% 68.8%
3ic9A03 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.56 47.0 3.92e-01 100.0% 96.7%
1gqyB02 3.40.1190.10 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Mur-like, catalytic domain 0.56 43.0 3.02e-01 85.5% 79.7%
1gutA00 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.56 42.0 4.14e-01 88.7% 77.6%
1eqtA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.56 41.0 4.06e-01 80.6% 77.6%
2czoA00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.56 45.0 3.58e-01 90.3% 79.2%
3urgA02 2.30.30.530 Mainly Beta › Roll › SH3 type barrels. › Calcium binding protein CcbP, beta-barrel domain 0.56 47.0 4.71e-01 100.0% 98.4%
6jy5B00 2.40.50.220 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › EutN/Ccml 0.55 38.0 3.52e-01 77.4% 54.9%
5cbeE00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.55 41.0 4.06e-01 80.6% 81.2%
2glxA02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.55 41.0 2.94e-01 83.9% 65.4%
2kumA01 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.55 41.0 4.20e-01 88.7% 89.5%
2qkdA03 2.20.25.420 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › ZPR1, zinc finger domain 0.55 38.0 4.08e-01 85.5% 92.2%
3zsjA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.54 45.0 3.62e-01 100.0% 87.0%
3bbjA00 2.40.160.210 Mainly Beta › Beta Barrel › Porin › Acyl-CoA thioesterase, double hotdog domain 0.54 40.0 2.75e-01 85.5% 36.0%
2bvbA00 2.60.120.710 Mainly Beta › Sandwich › Jelly Rolls › Toxoplasma gondii micronemal protein 1 TgMIC1 0.54 44.0 3.60e-01 100.0% 70.1%
3c6kA02 2.30.140.10 Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain 0.54 38.0 3.95e-01 91.9% 87.5%
4kujA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.54 45.0 3.53e-01 100.0% 77.3%
3e82E02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.53 40.0 2.87e-01 83.9% 68.0%
3uxuA00 1.10.443.10 Mainly Alpha › Orthogonal Bundle › hpI Integrase; Chain A › Intergrase catalytic core 0.53 42.0 3.22e-01 91.9% 39.0%
4mtsA00 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.52 35.0 2.88e-01 71.0% 37.2%
2oa9B02 3.30.70.3570 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › MvaI/BcnI restriction endonuclease, recognition domain 0.52 40.0 3.35e-01 91.9% 92.1%
2x5gA00 3.30.720.60 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › 0.50 38.0 3.41e-01 96.8% 57.1%
ECOD (61)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4405469 4.1.1.248 ↗ beta barrels › SH3 › SH3 › SH3 › CABIT 0.75 65.0 5.66e-01 100.0% 63.2%
3216019 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.71 63.0 6.23e-01 100.0% 95.4%
3974499 2487.1.1.3 ↗ a/b three-layered sandwiches › "The ""swivelling"" beta/beta/alpha domains" › "The ""swivelling"" beta/beta/alpha domain" › "The ""swivelling"" beta/beta/alpha domain" › Aconitase_C 0.71 56.0 3.68e-01 87.1% 79.6%
3931715 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.70 60.0 5.21e-01 98.4% 96.0%
5034724 4.1.1.482 ↗ beta barrels › SH3 › SH3 › SH3 › DUF4314 0.69 54.0 5.66e-01 90.3% 94.5%
3497365 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.69 52.0 5.42e-01 100.0% 92.7%
3917372 4.1.1.101 ↗ beta barrels › SH3 › SH3 › SH3 › Tudor_2 0.69 50.0 4.74e-01 100.0% 65.3%
5026824 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.68 50.0 4.90e-01 100.0% 71.4%
5042986 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.68 53.0 5.43e-01 100.0% 91.7%
5068388 2.4.1.0 ↗ beta barrels › OB-fold › MOP-like › MOP-like 0.66 43.0 4.53e-01 77.4% 76.4%
4284709 4.1.1.111 ↗ beta barrels › SH3 › SH3 › SH3 › Tudor_RapA 0.65 46.0 4.86e-01 100.0% 85.5%
5050338 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.65 51.0 4.23e-01 90.3% 78.3%
4974630 220.1.1.76 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › bPH_2 0.65 50.0 4.39e-01 88.7% 88.0%
3482713 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.65 50.0 4.02e-01 88.7% 89.6%
3742938 4.1.1.102 ↗ beta barrels › SH3 › SH3 › SH3 › Tudor_3 0.64 49.0 4.91e-01 100.0% 80.0%
3687350 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.64 48.0 5.08e-01 98.4% 90.9%
3706000 4.1.1.92 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_9 0.64 55.0 5.24e-01 100.0% 89.3%
4960540 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.63 52.0 5.18e-01 100.0% 89.2%
3998934 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.63 50.0 4.27e-01 88.7% 86.7%
4241924 4.1.1.93 ↗ beta barrels › SH3 › SH3 › SH3 › 40S_S4_C 0.63 47.0 4.31e-01 100.0% 58.9%
3912833 2003.1.2.5 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FMO-like 0.63 51.0 3.02e-01 95.2% 59.5%
3207081 4.1.1.92 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_9 0.62 52.0 5.21e-01 96.8% 93.8%
4103327 2.4.1.2 ↗ beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 0.62 47.0 3.86e-01 95.2% 43.1%
None — 0.62 50.0 3.07e-01 95.2% 36.9%
5012094 7.1.1.0 ↗ beta barrels › PDZ domain › PDZ domain › PDZ domain 0.62 50.0 4.60e-01 95.2% 89.4%
3445096 5.1.3.68 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › DUF1618 0.60 47.0 2.96e-01 90.3% 28.1%
3385654 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.60 50.0 4.15e-01 98.4% 66.7%
4250478 2.4.1.2 ↗ beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 0.60 49.0 3.91e-01 93.5% 48.5%
3894564 1170.1.1.1 ↗ beta barrels › IL8-related › IL8-related › IL8 › IL8 0.60 44.0 4.08e-01 82.3% 65.1%
4073602 2.4.1.2 ↗ beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 0.59 42.0 3.56e-01 95.2% 42.7%
3531333 220.1.1.35 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › IQ_SEC7_PH 0.59 47.0 3.60e-01 93.5% 50.3%
3733247 2003.1.2.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain 0.59 48.0 3.30e-01 95.2% 52.9%
3479736 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.59 51.0 4.30e-01 100.0% 72.5%
3600469 10.13.1.0 ↗ beta sandwiches › jelly-roll › Calcium ATPase, transduction domain A › Calcium ATPase, transduction domain A 0.58 48.0 3.73e-01 100.0% 91.4%
3927411 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.58 40.0 4.42e-01 91.9% 100.0%
4236900 2.4.1.2 ↗ beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 0.58 46.0 3.70e-01 95.2% 43.4%
3890480 1170.1.1.1 ↗ beta barrels › IL8-related › IL8-related › IL8 › IL8 0.57 42.0 4.04e-01 82.3% 73.3%
3476644 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.57 36.0 4.12e-01 90.3% 97.5%
3371185 2.1.1.130 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DUF223 0.57 44.0 2.88e-01 87.1% 23.0%
3606311 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.57 45.0 4.27e-01 90.3% 86.7%
163462 2008.1.1.63 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › MvaI_BcnI 0.56 42.0 2.87e-01 82.3% 64.2%
1558587 1170.1.1.1 ↗ beta barrels › IL8-related › IL8-related › IL8 › IL8 0.56 41.0 3.92e-01 80.6% 68.8%
4578663 325.1.7.0 ↗ a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif 0.56 42.0 4.08e-01 83.9% 74.3%
4038410 227.1.1.12 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad9 0.56 43.0 3.46e-01 88.7% 93.6%
3979903 4.1.1.465 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_6, SH3_7 0.56 48.0 3.19e-01 100.0% 24.4%
3282644 2.24.1.2 ↗ beta barrels › OB-fold › probable receptor YhhM › probable receptor YhhM › DUF7489 0.56 39.0 3.94e-01 79.0% 73.8%
3540014 243.1.1.40 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like › NXF_NTF2 0.56 44.0 3.56e-01 90.3% 80.0%
368907 2003.1.2.24 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox_2 0.56 47.0 3.91e-01 100.0% 100.0%
3166879 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.56 45.0 4.47e-01 100.0% 90.8%
3878850 1170.1.1.1 ↗ beta barrels › IL8-related › IL8-related › IL8 › IL8 0.56 41.0 3.90e-01 80.6% 72.0%
3737927 220.1.1.294 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PF26663 0.55 46.0 3.96e-01 100.0% 69.1%
3386542 222.1.1.0 ↗ a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase 0.55 41.0 3.96e-01 85.5% 97.3%
4189715 298.1.1.0 ↗ a+b two layers › FwdE/GAPDH domain-like › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 0.54 43.0 2.78e-01 91.9% 64.3%
3269932 5.1.5.27 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › APEH_N 0.53 44.0 2.69e-01 96.8% 28.9%
3433881 5.3.1.2 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-Prism II › beta-Prism II › B_lectin 0.53 42.0 3.38e-01 90.3% 72.6%
4537528 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.53 44.0 4.32e-01 100.0% 91.4%
3783958 9.16.1.4 ↗ beta barrels › Lipocalins/Streptavidin › Hypothetical protein Atu4866 › Hypothetical protein Atu4866 › Rot1 0.53 42.0 3.17e-01 90.3% 95.2%
3695678 3924.1.1.0 ↗ alpha complex topology › Sterol uptake control protein 2 › Sterol uptake control protein 2 › Sterol uptake control protein 2 0.53 43.0 2.66e-01 96.8% 26.1%
4155224 9.16.1.4 ↗ beta barrels › Lipocalins/Streptavidin › Hypothetical protein Atu4866 › Hypothetical protein Atu4866 › Rot1 0.53 41.0 3.13e-01 88.7% 95.0%
4939442 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.51 40.0 2.64e-01 90.3% 24.2%
4594780 5.1.4.307 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › PF29630 0.50 41.0 2.57e-01 91.9% 22.5%