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MG575421.1__QDH85534.1__X__00027

Bact-Vir

MG575421.1__QDH85534.1__X__00027

Identity

Accession:
MG575421 ↗
Kingdom:
phage

Quality

84.1 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 5-54
PDB
Domain cluster: representative
CATH (44)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3bjnA00 3.30.450.40 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain 0.78 55.0 3.76e-01 96.0% 22.8%
3obfA00 3.30.450.40 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain 0.76 52.0 3.55e-01 72.0% 79.5%
2xrnA02 3.30.450.40 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain 0.76 54.0 3.59e-01 96.0% 20.9%
2qv8A00 3.55.40.10 Alpha Beta › 3-Layer(bab) Sandwich › minor pseudopilin epsh fold › minor pseudopilin epsh domain 0.70 58.0 4.24e-01 96.0% 66.7%
4xmqA01 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.70 50.0 3.67e-01 76.0% 85.7%
1rzmA01 3.30.70.1140 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Phospho-2-dehydro-3-deoxyheptonate aldolase; domain 1 0.70 54.0 4.69e-01 88.0% 92.5%
1g8mA03 3.40.140.20 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › AICAR transformylase, duplication domain 0.67 56.0 4.08e-01 96.0% 55.8%
1y0nA00 1.10.10.610 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › YehU-like 0.66 52.0 4.61e-01 86.0% 87.3%
3cuqA03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.62 40.0 3.47e-01 98.0% 41.2%
3na2A00 3.40.1570.20 Alpha Beta › 3-Layer(aba) Sandwich › Heme iron utilization protein-like fold › 0.62 44.0 3.24e-01 76.0% 39.1%
6mfxA02 3.30.559.10 Alpha Beta › 2-Layer Sandwich › Chloramphenicol Acetyltransferase › Chloramphenicol acetyltransferase-like domain 0.62 44.0 3.18e-01 78.0% 60.6%
1e6vB02 1.20.840.10 Mainly Alpha › Up-down Bundle › Methyl-coenzyme M Reductase; Chain B, domain 2 › Methyl-coenzyme M reductase, alpha/beta subunit, C-terminal 0.62 52.0 3.29e-01 98.0% 43.9%
1t3qC02 3.30.465.10 Alpha Beta › 2-Layer Sandwich › Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 › 0.61 47.0 3.51e-01 82.0% 89.8%
5t3dA01 3.30.559.10 Alpha Beta › 2-Layer Sandwich › Chloramphenicol Acetyltransferase › Chloramphenicol acetyltransferase-like domain 0.61 43.0 3.05e-01 78.0% 58.9%
1xeeA01 3.10.20.390 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Chemotaxis-inhibiting protein CHIPS 0.60 45.0 3.87e-01 80.0% 95.1%
6oyfA01 3.30.559.10 Alpha Beta › 2-Layer Sandwich › Chloramphenicol Acetyltransferase › Chloramphenicol acetyltransferase-like domain 0.60 43.0 3.10e-01 78.0% 57.5%
2vfrA02 3.30.465.10 Alpha Beta › 2-Layer Sandwich › Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 › 0.60 40.0 2.98e-01 70.0% 73.8%
2epjA01 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.60 47.0 3.29e-01 88.0% 35.8%
2l72A00 3.40.20.10 Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin 0.59 46.0 3.72e-01 96.0% 49.2%
2xf1A00 3.40.20.10 Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin 0.59 47.0 3.70e-01 96.0% 50.8%
4o1nD01 3.10.20.120 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.59 41.0 3.27e-01 76.0% 64.3%
2hoeA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.58 38.0 3.68e-01 98.0% 58.6%
1ou8A00 2.30.30.220 Mainly Beta › Roll › SH3 type barrels. › SspB-like 0.57 39.0 3.24e-01 74.0% 84.9%
2af6A01 3.30.70.3180 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.57 38.0 2.87e-01 70.0% 32.8%
3l44A01 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.57 43.0 3.06e-01 90.0% 33.9%
1ca1A02 2.60.60.20 Mainly Beta › Sandwich › Lipoxygenase-1 › PLAT/LH2 domain 0.56 39.0 2.98e-01 74.0% 90.8%
6juvB01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.56 41.0 3.63e-01 80.0% 80.0%
1m4jA00 3.40.20.10 Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin 0.56 43.0 3.40e-01 96.0% 48.9%
2ihyA00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.56 38.0 2.51e-01 74.0% 22.6%
3tj8A02 3.30.70.790 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › UreE, C-terminal domain 0.55 45.0 4.08e-01 100.0% 86.5%
2mp4A00 3.40.20.10 Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin 0.55 43.0 3.16e-01 96.0% 48.5%
2pq0A02 3.30.1240.10 Alpha Beta › 2-Layer Sandwich › Hypothetical Protein, Haloacid Dehalogenase-like Hydrolase; Chain: A; domain 2 › 0.54 45.0 3.68e-01 96.0% 59.0%
1d3yB02 3.40.1360.10 Alpha Beta › 3-Layer(aba) Sandwich › Dna Topoisomerase Vi A Subunit; Chain: A, domain 2 › 0.54 44.0 2.99e-01 98.0% 74.7%
3oajA02 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.54 38.0 2.88e-01 78.0% 28.5%
6hj2A00 1.10.565.10 Mainly Alpha › Orthogonal Bundle › Retinoid X Receptor › Retinoid X Receptor 0.53 43.0 2.76e-01 94.0% 90.1%
2oviA00 3.40.1570.10 Alpha Beta › 3-Layer(aba) Sandwich › Heme iron utilization protein-like fold › HemS/ChuS/ChuX like domains 0.53 36.0 2.62e-01 72.0% 59.5%
1zcdA00 1.20.1530.10 Mainly Alpha › Up-down Bundle › Na+/H+ antiporter like fold › Na+/H+ antiporter like domain 0.53 45.0 2.69e-01 96.0% 15.4%
2wpvE00 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.53 45.0 2.80e-01 94.0% 20.7%
2eixA01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.53 40.0 3.16e-01 82.0% 89.6%
2ig6A00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.52 42.0 3.21e-01 100.0% 73.4%
2l01A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.51 39.0 3.55e-01 92.0% 67.5%
1b34B00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.51 36.0 3.22e-01 76.0% 95.9%
6b9tF01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.51 36.0 2.74e-01 76.0% 71.2%
2qejD01 3.10.20.120 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.50 42.0 3.29e-01 98.0% 62.7%
ECOD (58)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4990565 304.115.1.0 a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in DAHP synthase › Ferredoxin-like domain in DAHP synthase 0.78 55.0 5.32e-01 78.0% 67.3%
1565241 223.3.1.1 a+b three layers › Profilin-like › a+b domain in beta-lactamase/transpeptidase-like proteins › a+b domain in beta-lactamase/transpeptidase-like proteins › Beta-lactamase 0.73 49.0 5.16e-01 94.0% 77.8%
4368957 274.1.1.13 a+b two layers › Pili subunits › Pili subunits › Pili subunits › GspH 0.73 61.0 4.36e-01 96.0% 61.9%
4446761 3433.1.2.0 a+b duplicates or obligate multimers › ParB dimerization domain › ParB dimerization domain › Chromosome-encoded ParB dimerization domain 0.73 49.0 4.74e-01 72.0% 63.6%
3387810 223.1.1.51 a+b three layers › Profilin-like › sensor domains › sensor domains › MCP-like_PDC_1 0.72 51.0 3.27e-01 76.0% 46.5%
3850744 263.1.1.0 a+b three layers › SRF-like › SRF-like › SRF-like 0.72 48.0 4.30e-01 96.0% 50.0%
3967126 274.1.1.13 a+b two layers › Pili subunits › Pili subunits › Pili subunits › GspH 0.71 58.0 4.25e-01 96.0% 62.8%
3962316 873.1.1.0 a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain 0.69 46.0 3.55e-01 72.0% 29.2%
4968322 304.126.1.0 a+b two layers › Alpha-beta plaits › ferredoxin-like domain in vacuolar ATP synthase subunit C › ferredoxin-like domain in vacuolar ATP synthase subunit C 0.66 44.0 4.36e-01 78.0% 65.5%
4997643 2004.1.1.97 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MobB 0.64 47.0 3.11e-01 80.0% 74.8%
5023651 862.1.1.0 a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain 0.64 55.0 3.43e-01 100.0% 50.3%
3524888 304.8.1.10 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT_7 0.63 44.0 4.09e-01 78.0% 71.4%
5065439 2004.1.1.97 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MobB 0.63 46.0 3.25e-01 80.0% 90.9%
5001157 304.120.1.6 a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in ThiI › Ferredoxin-like domain in ThiI › ThiI_fer 0.63 44.0 3.82e-01 78.0% 63.5%
3612262 1189.1.1.0 alpha bundles › VSG (variant surface glycoprotein) N-terminal domain and haptoglobin-hemoglobin receptor › VSG (variant surface glycoprotein) N-terminal domain and haptoglobin-hemoglobin receptor › VSG (variant surface glycoprotein) N-terminal domain and haptoglobin-hemoglobin receptor 0.61 45.0 2.72e-01 80.0% 67.0%
3320698 109.4.1.1267 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, DYW_deaminase, E_motif 0.60 48.0 2.70e-01 90.0% 10.1%
3280250 1059.1.1.1 a+b two layers › Omega-3 polyunsaturated fatty acid synthase subunit PfaD N-terminal domain › Omega-3 polyunsaturated fatty acid synthase subunit PfaD N-terminal domain › Omega-3 polyunsaturated fatty acid synthase subunit PfaD N-terminal domain › PfaD_N 0.60 47.0 4.86e-01 100.0% 97.8%
3370602 109.4.1.1520 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, DYW_deaminase, E_motif 0.58 46.0 2.86e-01 88.0% 38.7%
3349809 109.4.1.1285 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, DYW_deaminase, Eplus_motif, E_motif 0.57 46.0 2.65e-01 92.0% 12.6%
3369937 109.4.1.1285 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, DYW_deaminase, Eplus_motif, E_motif 0.57 45.0 2.56e-01 92.0% 9.6%
3676373 109.4.1.1291 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, PPR_3, DYW_deaminase, E_motif 0.57 46.0 2.62e-01 90.0% 19.8%
5042324 101.1.11.0 alpha arrays › HTH › HTH › Ribbon-helix-helix 0.57 48.0 4.00e-01 96.0% 76.7%
3801804 221.1.1.0 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.57 41.0 3.42e-01 78.0% 75.6%
3830691 109.4.1.2337 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, PPR_3, DYW_deaminase, E_motif, TPR_24 0.57 47.0 2.66e-01 92.0% 20.8%
3802543 109.4.1.1267 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, DYW_deaminase, E_motif 0.56 44.0 2.56e-01 92.0% 11.5%
3802249 109.4.1.1291 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, PPR_3, DYW_deaminase, E_motif 0.56 45.0 2.61e-01 92.0% 12.5%
3333247 109.4.1.1291 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, PPR_3, DYW_deaminase, E_motif 0.56 44.0 2.61e-01 92.0% 14.8%
3739970 109.4.1.64 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › GET4 0.56 43.0 2.78e-01 90.0% 24.4%
3299472 109.4.1.2982 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, PPR_3, DYW_deaminase, PPR_long, Eplus_motif, E_motif 0.56 45.0 2.70e-01 92.0% 16.8%
3533151 11.1.1.563 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › CATSPERB_1st 0.56 40.0 3.33e-01 78.0% 56.7%
4400642 4.1.1.257 beta barrels › SH3 › SH3 › SH3 › Flag1_repress 0.56 37.0 3.23e-01 70.0% 75.3%
3419226 109.4.1.3173 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_3, DYW_deaminase, Eplus_motif, E_motif 0.56 44.0 2.65e-01 88.0% 33.0%
4184822 2002.1.1.69 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › MM_CoA_mutase 0.55 44.0 2.52e-01 90.0% 20.3%
3988118 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.55 41.0 3.43e-01 78.0% 65.9%
5058130 304.120.1.6 a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in ThiI › Ferredoxin-like domain in ThiI › ThiI_fer 0.55 41.0 3.75e-01 86.0% 96.0%
3651804 109.4.1.1520 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, DYW_deaminase, E_motif 0.55 45.0 2.63e-01 94.0% 13.9%
5063713 304.3.1.0 a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain 0.55 37.0 3.56e-01 76.0% 58.3%
5024502 304.120.1.0 a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in ThiI › Ferredoxin-like domain in ThiI 0.55 39.0 3.79e-01 78.0% 67.3%
4081896 223.1.1.0 a+b three layers › Profilin-like › sensor domains › sensor domains 0.55 40.0 3.17e-01 100.0% 35.0%
3383616 109.4.1.1291 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, PPR_3, DYW_deaminase, E_motif 0.55 45.0 2.54e-01 92.0% 17.7%
4961586 205.1.1.127 a+b two layers › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › NADH-G_4Fe-4S_3 0.55 39.0 2.90e-01 80.0% 26.7%
3820762 109.4.1.1291 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, PPR_3, DYW_deaminase, E_motif 0.55 43.0 2.51e-01 92.0% 11.8%
4997604 69.1.1.0 beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint 0.54 46.0 3.19e-01 96.0% 62.4%
4993480 69.1.1.0 beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint 0.54 46.0 3.23e-01 96.0% 63.7%
3444049 109.4.1.1285 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, DYW_deaminase, Eplus_motif, E_motif 0.54 44.0 2.58e-01 100.0% 64.0%
3573985 7516.1.1.35 a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Branch 0.53 42.0 2.76e-01 88.0% 38.2%
5056043 304.120.1.0 a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in ThiI › Ferredoxin-like domain in ThiI 0.53 38.0 3.59e-01 82.0% 89.2%
3168940 109.4.1.64 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › GET4 0.53 45.0 2.72e-01 94.0% 18.7%
4120485 377.1.1.0 few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.52 42.0 2.47e-01 88.0% 14.1%
3296178 109.4.1.1476 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_1, PPR_2, DYW_deaminase, E_motif 0.51 45.0 2.46e-01 100.0% 7.5%
3028533 188.1.1.0 alpha arrays › Nuclear receptor ligand-binding domain › Nuclear receptor ligand-binding domain › Nuclear receptor ligand-binding domain 0.51 42.0 2.58e-01 88.0% 19.0%
2553542 188.1.1.2 alpha arrays › Nuclear receptor ligand-binding domain › Nuclear receptor ligand-binding domain › Nuclear receptor ligand-binding domain › Hormone_recep,SRC-1 0.51 42.0 2.56e-01 88.0% 18.2%
4658938 4.1.1.96 beta barrels › SH3 › SH3 › SH3 › Hfq 0.51 39.0 3.30e-01 86.0% 60.0%
3802293 109.4.1.2064 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, DYW_deaminase, E_motif, TPR_24 0.51 45.0 2.63e-01 100.0% 14.1%
4012100 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.51 43.0 3.17e-01 96.0% 67.1%
3511375 4.1.1.349 beta barrels › SH3 › SH3 › SH3 › ROF 0.51 38.0 3.31e-01 84.0% 60.0%
3197747 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.51 36.0 2.94e-01 96.0% 40.0%
3315113 109.4.1.1285 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, DYW_deaminase, Eplus_motif, E_motif 0.50 44.0 2.74e-01 100.0% 16.4%