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MG592392.1__AUR81456.1__NVP1005O_59__00059

Bact-Vir

MG592392.1__AUR81456.1__NVP1005O_59__00059

Identity

Accession:
MG592392 ↗
Kingdom:
phage

Quality

95.4 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Vibrio_phage_1.005.O._10N.286.48.F2

TaxID: 1881414

Cluster

View cluster (54 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-88
PDB
Domain cluster: rep: SR-VP_2-4_scaffold_141_2548329_prodigal-single.1__X__X__00211__D1-121
CATH (93)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1hjrA00 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.87 82.0 6.57e-01 100.0% 63.9%
4ep4A00 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.87 81.0 6.42e-01 100.0% 63.3%
4ktwA00 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.80 72.0 5.90e-01 100.0% 65.6%
1e3mB02 3.30.420.110 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › MutS, connector domain 0.75 56.0 4.89e-01 100.0% 52.7%
5bjuA01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.71 64.0 4.38e-01 100.0% 40.0%
3v3tA01 3.40.50.1440 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Tubulin/FtsZ, GTPase domain 0.68 54.0 4.12e-01 100.0% 36.6%
4zrmA01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.68 61.0 4.68e-01 100.0% 84.1%
7xg9A01 3.20.20.220 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › 0.68 55.0 3.80e-01 100.0% 27.1%
8gr2A01 3.40.50.1110 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › SGNH hydrolase 0.67 61.0 4.71e-01 100.0% 59.0%
2pk3A01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.67 60.0 4.48e-01 100.0% 75.8%
1a9yA02 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.67 59.0 4.51e-01 100.0% 83.0%
2derB01 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.67 48.0 3.70e-01 100.0% 33.0%
4j3fA00 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.66 58.0 4.21e-01 100.0% 70.3%
4ltyA01 3.60.21.10 Alpha Beta › 4-Layer Sandwich › Purple Acid Phosphatase; chain A, domain 2 › Metallo-dependent phosphatases 0.66 55.0 3.83e-01 100.0% 28.5%
1sb8A01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.65 58.0 4.30e-01 100.0% 75.2%
2jl1A01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.65 60.0 4.75e-01 100.0% 80.7%
3c4aA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.65 44.0 3.28e-01 98.9% 28.2%
3r7wA01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.65 57.0 4.57e-01 100.0% 86.3%
3u0hA00 3.20.20.150 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Divalent-metal-dependent TIM barrel enzymes 0.65 53.0 3.76e-01 100.0% 28.7%
3ig4A01 3.40.350.10 Alpha Beta › 3-Layer(aba) Sandwich › Creatine Amidinohydrolase; Chain A, domain 1 › Creatinase/prolidase N-terminal domain 0.64 58.0 4.67e-01 100.0% 84.1%
2b99C00 3.40.50.960 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Lumazine/riboflavin synthase 0.64 56.0 4.74e-01 100.0% 94.1%
4q9aA00 3.40.50.1110 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › SGNH hydrolase 0.64 58.0 4.30e-01 100.0% 55.3%
2pcqA00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.64 43.0 3.03e-01 100.0% 21.6%
6m4eA01 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.63 57.0 3.49e-01 100.0% 29.1%
1b1yA00 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.63 57.0 3.52e-01 100.0% 18.0%
4h08A00 3.40.50.1110 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › SGNH hydrolase 0.63 57.0 4.37e-01 100.0% 68.5%
2ac4A02 3.40.50.1400 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.63 57.0 4.85e-01 100.0% 80.3%
4v2xA01 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.63 57.0 3.82e-01 100.0% 38.6%
3dqpA00 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.63 57.0 4.25e-01 100.0% 47.7%
1szpB02 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.63 56.0 4.25e-01 100.0% 49.8%
4qqrB00 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.63 56.0 3.98e-01 100.0% 54.5%
7toiA01 3.40.50.1110 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › SGNH hydrolase 0.62 55.0 4.17e-01 100.0% 74.9%
2i71A01 3.40.50.10640 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › SSO1389-like 0.62 56.0 4.18e-01 100.0% 72.2%
3f4nC00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.62 55.0 4.04e-01 100.0% 51.2%
2f9fA00 3.40.50.2000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycogen Phosphorylase B; 0.62 42.0 3.46e-01 100.0% 37.3%
4b8wB01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.61 55.0 4.20e-01 100.0% 72.1%
3h1qA02 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.61 53.0 4.88e-01 95.5% 100.0%
1jmvA00 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.61 55.0 4.71e-01 100.0% 95.7%
1jhdA01 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.61 46.0 3.57e-01 100.0% 35.5%
3bexA02 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.61 55.0 5.04e-01 98.9% 100.0%
3zidB00 3.40.50.1440 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Tubulin/FtsZ, GTPase domain 0.61 53.0 3.61e-01 100.0% 68.1%
2ielA00 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.60 54.0 4.75e-01 100.0% 98.5%
6jp6D01 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.60 53.0 4.00e-01 100.0% 70.1%
6uqyB01 3.40.50.1110 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › SGNH hydrolase 0.60 53.0 3.81e-01 100.0% 76.8%
3cqjA00 3.20.20.150 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Divalent-metal-dependent TIM barrel enzymes 0.60 52.0 3.70e-01 100.0% 31.2%
8b3yA01 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.60 55.0 3.70e-01 100.0% 30.1%
1o94A02 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.60 48.0 3.91e-01 100.0% 45.8%
2w0mA00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.60 53.0 4.00e-01 100.0% 49.5%
2as0A03 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.60 53.0 4.00e-01 100.0% 77.1%
2v3aA02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.60 41.0 3.61e-01 100.0% 46.7%
1wraA01 3.60.15.10 Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like 0.60 54.0 3.68e-01 100.0% 30.0%
2p9bA03 3.40.50.10910 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Amidohydrolase 0.60 48.0 4.34e-01 97.7% 62.9%
2z3vA00 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.59 54.0 4.64e-01 100.0% 97.8%
1b93B00 3.40.50.1380 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Methylglyoxal synthase-like domain 0.59 52.0 4.42e-01 100.0% 72.2%
5vipB01 3.90.226.10 Alpha Beta › Alpha-Beta Complex › 2-enoyl-CoA Hydratase; Chain A, domain 1 › 2-enoyl-CoA Hydratase; Chain A, domain 1 0.59 51.0 3.84e-01 100.0% 37.8%
3btnA02 3.20.20.10 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Alanine racemase 0.59 52.0 3.91e-01 98.9% 59.6%
4rw0A00 3.40.50.1110 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › SGNH hydrolase 0.59 53.0 4.17e-01 100.0% 76.1%
4dmgA03 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.59 53.0 4.01e-01 100.0% 76.3%
2waaA02 3.40.50.1110 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › SGNH hydrolase 0.59 52.0 3.99e-01 100.0% 80.7%
4jc0A03 3.30.750.200 Alpha Beta › 2-Layer Sandwich › Transcription Regulator spoIIAA › 0.59 46.0 4.19e-01 98.9% 62.5%
3io3A01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.59 50.0 3.85e-01 100.0% 86.1%
6gvdA02 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.59 46.0 3.13e-01 100.0% 22.8%
3cr8C02 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.58 43.0 3.42e-01 100.0% 35.9%
2wm1A00 3.20.20.140 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Metal-dependent hydrolases 0.58 51.0 3.52e-01 100.0% 31.3%
1reqA02 3.40.50.280 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Cobalamin-binding domain 0.58 51.0 4.22e-01 100.0% 65.9%
3tscA00 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.58 49.0 3.63e-01 100.0% 96.7%
2nv9D02 3.20.20.10 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Alanine racemase 0.58 50.0 3.79e-01 98.9% 60.4%
3dmyA03 3.40.50.261 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Succinyl-CoA synthetase domains 0.58 51.0 4.19e-01 100.0% 90.2%
3nv7A00 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.58 42.0 3.58e-01 100.0% 44.5%
3t5tA02 3.40.50.2000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycogen Phosphorylase B; 0.58 49.0 3.87e-01 100.0% 44.7%
2wnwA02 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.57 51.0 3.45e-01 100.0% 28.3%
6w6aA00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.57 51.0 3.70e-01 100.0% 50.6%
6lcjD01 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.57 51.0 3.53e-01 100.0% 38.0%
2xsaA01 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.57 48.0 3.44e-01 100.0% 30.3%
5d8nA01 3.40.220.10 Alpha Beta › 3-Layer(aba) Sandwich › Leucine Aminopeptidase, subunit E; domain 1 › Leucine Aminopeptidase, subunit E, domain 1 0.56 49.0 3.92e-01 100.0% 79.3%
1qlwA00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.56 49.0 3.40e-01 100.0% 36.5%
4rr9A01 3.50.80.10 Alpha Beta › 3-Layer(bba) Sandwich › D-tyrosyl-trna(Tyr) Deacylase; Chain: A; › D-tyrosyl-tRNA(Tyr) deacylase 0.56 48.0 4.16e-01 100.0% 61.9%
1aipA01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.56 49.0 3.97e-01 100.0% 91.2%
4j3cB02 3.40.1280.10 Alpha Beta › 3-Layer(aba) Sandwich › Alpha/beta knot › SPOUT methyltransferase, trefoil knot domain 0.55 41.0 3.31e-01 100.0% 41.8%
3lqkA00 3.40.50.1950 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Flavin prenyltransferase-like 0.55 48.0 3.79e-01 100.0% 84.5%
1efzA00 3.20.20.105 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Queuine tRNA-ribosyltransferase-like 0.55 48.0 3.20e-01 100.0% 29.6%
5exeA02 3.40.50.920 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.55 48.0 4.12e-01 100.0% 64.6%
2hwyA00 3.40.50.1010 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 5'-nuclease 0.54 44.0 4.05e-01 100.0% 67.2%
1i60A00 3.20.20.150 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Divalent-metal-dependent TIM barrel enzymes 0.54 48.0 3.42e-01 100.0% 54.0%
4rctA01 3.30.870.10 Alpha Beta › 2-Layer Sandwich › Endonuclease; Chain A › Endonuclease Chain A 0.54 48.0 3.80e-01 100.0% 71.4%
1ad1A00 3.20.20.20 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Dihydropteroate synthase-like 0.53 46.0 3.34e-01 96.6% 73.1%
2egvA02 3.40.1280.10 Alpha Beta › 3-Layer(aba) Sandwich › Alpha/beta knot › SPOUT methyltransferase, trefoil knot domain 0.53 41.0 3.41e-01 100.0% 46.0%
5cr9A02 3.40.50.1980 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nitrogenase molybdenum iron protein domain 0.53 47.0 3.80e-01 100.0% 56.5%
3q71A00 3.40.220.10 Alpha Beta › 3-Layer(aba) Sandwich › Leucine Aminopeptidase, subunit E; domain 1 › Leucine Aminopeptidase, subunit E, domain 1 0.53 45.0 3.57e-01 100.0% 71.4%
2h29A00 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.52 45.0 3.61e-01 100.0% 69.1%
3no4A00 3.40.50.10310 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Creatininase 0.51 44.0 3.23e-01 100.0% 48.5%
7s2iA01 3.20.20.20 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Dihydropteroate synthase-like 0.51 45.0 3.25e-01 100.0% 38.6%
3oy2A02 3.40.50.2000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycogen Phosphorylase B; 0.51 45.0 3.34e-01 100.0% 67.2%
ECOD (98)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4484979 2484.1.1.25 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RuvC 0.90 85.0 6.65e-01 100.0% 60.7%
4522962 2484.1.1.25 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RuvC 0.90 85.0 6.54e-01 100.0% 58.3%
4638438 2484.1.1.25 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RuvC 0.89 84.0 6.72e-01 100.0% 64.4%
4373226 2484.1.1.25 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RuvC 0.89 84.0 6.36e-01 100.0% 54.6%
3966304 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.88 83.0 6.72e-01 100.0% 65.2%
4069907 2484.1.1.25 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RuvC 0.88 83.0 6.50e-01 100.0% 60.6%
4571749 2484.1.1.25 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RuvC 0.88 83.0 6.55e-01 100.0% 62.4%
4123278 2484.1.1.25 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RuvC 0.88 82.0 6.43e-01 100.0% 60.0%
3308941 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.87 82.0 6.06e-01 100.0% 54.1%
4252006 2484.1.1.25 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RuvC 0.87 82.0 6.49e-01 100.0% 61.8%
4292358 2484.1.1.25 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RuvC 0.87 82.0 6.46e-01 100.0% 61.2%
5040920 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.87 81.0 6.23e-01 100.0% 60.6%
4529580 2484.1.1.25 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RuvC 0.86 81.0 6.48e-01 100.0% 63.7%
1096260 2484.1.1.25 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RuvC 0.86 81.0 6.51e-01 100.0% 63.7%
4610182 2484.1.1.25 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RuvC 0.84 77.0 5.91e-01 100.0% 54.2%
4229347 2484.1.1.37 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Pan_kinase 0.81 65.0 5.98e-01 100.0% 68.2%
4950302 7592.1.1.3 ↗ a/b three-layered sandwiches › CARF (CRISPR-associated Rossmann fold) domains › CARF (CRISPR-associated Rossmann fold) domains › CARF (CRISPR-associated Rossmann fold) domains › DUF6293_N 0.81 59.0 4.81e-01 100.0% 43.2%
4224746 2484.1.1.37 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Pan_kinase 0.80 64.0 5.90e-01 100.0% 68.2%
3737725 2484.1.1.48 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › MutS_II 0.79 73.0 5.66e-01 100.0% 52.8%
5081740 2484.1.1.342 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › PF29288 0.78 65.0 5.22e-01 100.0% 47.9%
4423692 2484.1.1.40 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RuvX 0.77 68.0 5.76e-01 100.0% 60.7%
3596162 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.74 67.0 5.19e-01 100.0% 50.5%
5062114 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.74 65.0 5.73e-01 100.0% 67.2%
4573327 2484.1.1.40 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RuvX 0.73 68.0 5.48e-01 100.0% 64.2%
3288652 2484.1.1.40 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RuvX 0.73 66.0 5.35e-01 100.0% 62.4%
4597796 2484.1.1.40 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RuvX 0.73 67.0 5.59e-01 100.0% 64.8%
3511076 2005.1.1.36 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › SLC12 0.72 66.0 5.54e-01 100.0% 97.9%
4346434 2484.1.1.40 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RuvX 0.72 66.0 5.60e-01 100.0% 65.2%
4095791 2484.1.1.40 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RuvX 0.72 66.0 5.73e-01 100.0% 69.2%
4307499 2484.1.1.40 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RuvX 0.71 65.0 5.49e-01 100.0% 63.4%
1381490 2002.1.1.86 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Glyco_hydro_59 0.71 53.0 3.62e-01 100.0% 23.5%
3512052 2005.1.1.36 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › SLC12 0.71 64.0 5.40e-01 100.0% 97.9%
4308615 2484.1.1.40 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RuvX 0.71 64.0 5.53e-01 100.0% 67.4%
4306325 2484.1.1.40 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RuvX 0.70 65.0 5.36e-01 100.0% 63.3%
2877581 2484.1.1.95 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Terminase-T7_RNaseH-like 0.70 65.0 4.54e-01 100.0% 34.6%
4118739 2484.1.1.40 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RuvX 0.70 63.0 5.35e-01 100.0% 63.4%
3602255 2484.1.1.30 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Carbam_trans_N 0.70 63.0 6.10e-01 100.0% 89.0%
4096365 2484.1.1.40 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RuvX 0.70 64.0 5.29e-01 100.0% 70.7%
4126066 2484.1.1.40 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RuvX 0.69 63.0 5.32e-01 100.0% 63.4%
4001806 2005.1.1.36 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › SLC12 0.69 62.0 4.98e-01 100.0% 84.0%
3276001 2002.1.1.0 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels 0.69 53.0 3.59e-01 100.0% 22.2%
4156472 2484.1.1.40 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RuvX 0.69 62.0 5.19e-01 100.0% 61.3%
4559879 2484.1.1.40 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RuvX 0.69 63.0 5.33e-01 100.0% 65.7%
1787656 2003.1.6.1 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Tubulin nucleotide-binding domain-like › Tubulin 0.68 54.0 4.25e-01 100.0% 40.1%
3457302 2484.1.1.40 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RuvX 0.68 62.0 4.97e-01 100.0% 57.1%
4663092 2484.1.1.40 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RuvX 0.68 61.0 5.10e-01 100.0% 62.6%
4355370 2484.1.1.40 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RuvX 0.68 62.0 5.21e-01 100.0% 63.4%
3314969 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.67 59.0 5.08e-01 100.0% 71.7%
5072980 2004.1.1.146 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ATPase 0.65 59.0 4.29e-01 100.0% 46.0%
4136687 2484.1.1.37 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Pan_kinase 0.64 59.0 5.22e-01 100.0% 88.0%
4957804 7512.1.1.3 ↗ a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glycos_transf_1 0.64 49.0 3.79e-01 100.0% 37.4%
5040424 2006.1.6.0 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › vWA-like 0.63 56.0 4.38e-01 100.0% 87.2%
4314540 2003.1.1.84 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › PRISE 0.63 56.0 3.64e-01 100.0% 32.0%
5032385 7543.1.1.2 ↗ a/b three-layered sandwiches › Methylglyoxal synthase-like › Methylglyoxal synthase-like › Methylglyoxal synthase-like › MGS 0.63 56.0 4.66e-01 100.0% 72.3%
3987220 247.1.1.1 ↗ a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Lactamase_B 0.63 51.0 3.52e-01 89.8% 48.7%
3547923 2004.1.1.249 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MCM3AP_GANP 0.62 54.0 4.02e-01 100.0% 56.8%
3921897 2007.5.1.21 ↗ a/b three-layered sandwiches › Flavodoxin-like › SGNH hydrolase › SGNH hydrolase › NXPE4_C 0.62 54.0 3.76e-01 98.9% 60.2%
4168928 2002.1.1.116 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › PdxJ 0.62 56.0 4.00e-01 100.0% 48.1%
3291200 2007.5.1.8 ↗ a/b three-layered sandwiches › Flavodoxin-like › SGNH hydrolase › SGNH hydrolase › Lipase_GDSL_2 0.62 55.0 4.14e-01 100.0% 49.8%
4989685 2004.1.1.146 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ATPase 0.62 55.0 3.98e-01 100.0% 45.4%
4563037 2003.1.6.6 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Tubulin nucleotide-binding domain-like › Misat_Tub_SegII+Tubulin_3 0.62 55.0 3.91e-01 100.0% 93.4%
3587056 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.62 54.0 4.52e-01 100.0% 86.3%
4928346 2004.1.1.1219 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DUF7504 0.62 55.0 4.36e-01 100.0% 50.3%
5062741 2002.1.1.44 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › TatD_DNase 0.62 54.0 3.86e-01 98.9% 56.3%
3418933 2004.1.1.414 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › GTP_EFTU, MMR_HSR1 0.62 55.0 4.19e-01 100.0% 76.1%
3672327 2007.1.3.0 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › CheY-like 0.62 54.0 4.58e-01 100.0% 80.7%
5056515 2004.1.1.146 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ATPase 0.61 54.0 3.98e-01 100.0% 53.5%
3638653 2003.1.6.6 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Tubulin nucleotide-binding domain-like › Misat_Tub_SegII+Tubulin_3 0.61 53.0 3.85e-01 100.0% 93.5%
4066092 2002.1.1.116 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › PdxJ 0.61 55.0 4.01e-01 100.0% 51.0%
4600353 2484.1.1.37 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Pan_kinase 0.61 55.0 4.89e-01 98.9% 90.4%
4994600 2002.1.1.120 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM 0.61 51.0 3.96e-01 100.0% 41.0%
4957334 2005.1.1.3 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › Usp 0.61 54.0 4.80e-01 97.7% 99.2%
5084090 2499.1.1.1 ↗ a/b three-layered sandwiches › Subtilisin-like › Subtilisin-like › Subtilisin-like › Peptidase_S8 0.61 55.0 3.58e-01 100.0% 63.9%
4663370 2484.1.1.37 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Pan_kinase 0.61 56.0 4.89e-01 100.0% 83.6%
4260578 2002.1.1.121 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM,Mob_synth_C 0.61 51.0 3.52e-01 90.9% 46.8%
4460394 2002.1.1.116 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › PdxJ 0.60 54.0 3.96e-01 100.0% 52.1%
1254323 2003.1.6.1 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Tubulin nucleotide-binding domain-like › Tubulin 0.60 53.0 4.20e-01 100.0% 82.4%
4174733 2002.1.1.116 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › PdxJ 0.60 54.0 3.94e-01 100.0% 51.4%
4666966 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.60 54.0 4.69e-01 100.0% 86.7%
4950705 2005.1.1.3 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › Usp 0.60 54.0 4.74e-01 100.0% 94.6%
3736520 2003.1.1.53 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › NmrA 0.60 53.0 3.67e-01 100.0% 68.9%
4960600 2004.1.1.146 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ATPase 0.59 53.0 3.88e-01 100.0% 50.8%
3349539 2003.1.5.31 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › GRAS 0.59 45.0 3.02e-01 100.0% 19.6%
4989351 2002.1.1.60 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › AP_endonuc_2 0.59 52.0 3.79e-01 100.0% 54.1%
4984185 2002.1.1.60 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › AP_endonuc_2 0.59 52.0 3.78e-01 100.0% 67.1%
4974663 7512.1.1.3 ↗ a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glycos_transf_1 0.58 47.0 3.54e-01 100.0% 34.3%
4958034 7512.1.1.3 ↗ a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glycos_transf_1 0.58 44.0 3.44e-01 100.0% 34.4%
4978859 2494.1.1.2 ↗ a/b three-layered sandwiches › DTD-like › DTD-like (Pfam 02580) › DTD-like (Pfam 02580) › tRNA-Thr_ED 0.58 48.0 4.14e-01 100.0% 57.9%
993460 2002.1.1.85 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Glyco_hydro_30 0.57 51.0 3.44e-01 100.0% 28.7%
3788923 246.2.1.5 ↗ a+b four layers › Carbon-nitrogen hydrolase-like › Metallo-dependent phosphatases › Metallo-dependent phosphatases › Metallophos,ASMase_C 0.57 50.0 3.20e-01 100.0% 47.9%
3958641 2004.1.1.260 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MEDS 0.56 48.0 4.00e-01 100.0% 58.2%
4417579 2005.1.1.13 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › CTP_transf_like 0.56 43.0 3.39e-01 100.0% 38.4%
5026171 2002.1.1.120 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM 0.55 48.0 3.29e-01 100.0% 57.6%
3239982 2002.1.1.30 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Glyco_hydro_18 0.54 47.0 3.40e-01 100.0% 43.2%
5057749 7512.1.1.30 ↗ a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glyco_transf_4 0.54 46.0 3.81e-01 100.0% 86.9%
5009889 7512.1.1.3 ↗ a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glycos_transf_1 0.53 47.0 3.75e-01 100.0% 74.1%
4954578 2005.1.1.3 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › Usp 0.53 47.0 4.06e-01 100.0% 65.0%
3723349 207.1.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.52 44.0 3.72e-01 100.0% 63.0%
D2 medium residues 89-148
PDB
Domain cluster: representative
CATH (13)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1yoeA00 3.90.245.10 Alpha Beta › Alpha-Beta Complex › Inosine-uridine Nucleoside N-ribohydrolase; Chain A › Ribonucleoside hydrolase-like 0.63 52.0 3.36e-01 95.0% 34.8%
2fgyA01 1.20.120.1310 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Carboxysome Shell Carbonic Anhydrase, N-terminal helical domain 0.61 53.0 4.38e-01 96.7% 69.2%
4hstB03 1.10.1400.10 Mainly Alpha › Orthogonal Bundle › Penicillin amidase (Acylase) alpha subunit, N-terminal domain › Aminohydrolase, alpha-helical knob region 0.58 48.0 3.83e-01 95.0% 72.9%
7wf8B01 1.10.167.10 Mainly Alpha › Orthogonal Bundle › Regulator of G-protein Signalling 4; domain 2 › Regulator of G-protein Signalling 4, domain 2 0.57 49.0 3.95e-01 98.3% 81.8%
1dj8A00 1.10.890.10 Mainly Alpha › Orthogonal Bundle › 10k-s Protein, Hypothetical Protein A; Chain A › HNS-dependent expression A 0.56 41.0 3.84e-01 90.0% 62.0%
2khmA01 1.10.10.1350 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Spidroin domain, C-terminal domain 0.55 41.0 3.44e-01 90.0% 44.4%
3bniB00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.55 46.0 3.35e-01 93.3% 55.6%
1y56B01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.55 39.0 2.70e-01 75.0% 66.8%
1uajA02 1.10.1270.20 Mainly Alpha › Orthogonal Bundle › Trp Operon Repressor; Chain A › tRNA(m1g37)methyltransferase, domain 2 0.55 40.0 3.83e-01 95.0% 65.8%
3cz1A00 1.10.238.20 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › Pheromone/general odorant binding protein domain 0.54 43.0 3.55e-01 90.0% 70.1%
1x31B01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.54 45.0 3.10e-01 96.7% 42.0%
3axbA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.54 43.0 2.98e-01 96.7% 38.3%
3aa0B01 1.20.58.570 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › F-actin capping protein, alpha/beta subunit, N-terminal domain 0.51 32.0 2.83e-01 78.3% 42.0%
ECOD (12)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3710714 605.1.1.0 ↗ alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase 0.71 49.0 4.67e-01 90.0% 61.4%
4984481 103.5.1.0 ↗ alpha arrays › RuvA-C › post-HMGL domain-like › post-HMGL domain-like 0.68 44.0 3.83e-01 83.3% 42.1%
3973591 397.7.1.0 ↗ few secondary structure elements › Toxic hairpin › Ribosome-inactivating protein luffin P1 › Ribosome-inactivating protein luffin P1 0.67 46.0 5.13e-01 98.3% 95.6%
3498714 241.15.1.3 ↗ a+b two layers › Type III secretory system chaperone-like › FP (Fbxo7/PI31) dimerization domain › FP (Fbxo7/PI31) dimerization domain › SPC25 0.61 55.0 4.38e-01 98.3% 80.0%
3575456 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.59 51.0 4.49e-01 96.7% 84.4%
3173844 101.1.15.0 ↗ alpha arrays › HTH › HTH › HAT1, C-terminal domain 0.57 43.0 3.89e-01 81.7% 74.7%
4214522 3949.1.1.1 ↗ alpha arrays › tRNA delta(2)-isopentenylpyrophosphate transferase helical insertion domain › tRNA delta(2)-isopentenylpyrophosphate transferase helical insertion domain › tRNA delta(2)-isopentenylpyrophosphate transferase helical insertion domain › IPPT 0.57 50.0 3.35e-01 100.0% 33.3%
1954739 320.4.1.5 ↗ a+b two layers › R3H domain-like › PUB domain › PUB domain › Gasdermin_C 0.56 49.0 3.63e-01 100.0% 61.5%
3713092 108.1.1.0 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand 0.55 45.0 3.99e-01 91.7% 92.2%
5060339 187.1.1.1 ↗ alpha arrays › alpha-helical ferredoxin-like › alpha-helical ferredoxin › alpha-helical ferredoxin › Fer4_8 0.55 43.0 3.28e-01 83.3% 92.6%
3417227 108.1.1.0 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand 0.53 43.0 3.71e-01 95.0% 92.4%
3414102 5055.1.1.0 ↗ extended segments › Small-conductance potassium channel › Small-conductance potassium channel › Small-conductance potassium channel 0.52 44.0 4.22e-01 95.0% 100.0%