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MG592392.1__AUR81465.1__NVP1005O_68__00068

Bact-Vir

MG592392.1__AUR81465.1__NVP1005O_68__00068

Identity

Accession:
MG592392 ↗
Kingdom:
phage

Quality

88.6 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Vibrio_phage_1.005.O._10N.286.48.F2

TaxID: 1881414

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 8-54
PDB
Domain cluster: rep: ON526839.1__URG17631.1__GRN51_150__00015__D54-100
D2 high residues 64-110
PDB
Domain cluster: representative
CATH (16)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1b01A00 1.10.1220.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant › Met repressor-like 0.91 67.0 7.04e-01 80.9% 86.0%
1u9pA00 1.10.1220.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant › Met repressor-like 0.89 73.0 5.61e-01 87.2% 93.8%
2z99A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.82 57.0 4.55e-01 74.5% 39.1%
3hugA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.81 62.0 5.18e-01 83.0% 50.0%
6lmjB00 4.10.520.10 Few Secondary Structures › Irregular › HU Protein; Chain A › IHF-like DNA-binding proteins 0.81 62.0 4.85e-01 83.0% 39.8%
1o57A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.79 53.0 4.58e-01 72.3% 45.8%
2da4A01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.79 61.0 5.46e-01 91.5% 60.6%
3oceA03 1.10.40.30 Mainly Alpha › Orthogonal Bundle › Ribonucleotide Reductase Protein R1; domain 1 › Fumarase/aspartase (C-terminal domain) 0.78 53.0 5.05e-01 70.2% 60.0%
2ef8A00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.73 49.0 4.07e-01 76.6% 39.3%
3g2bA00 1.10.10.1150 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Coenzyme PQQ synthesis protein D (PqqD) 0.72 47.0 3.82e-01 72.3% 35.6%
5z4zC00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.66 59.0 4.74e-01 100.0% 81.8%
5y2vC01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.64 59.0 4.72e-01 100.0% 95.3%
4h15A00 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.60 48.0 3.06e-01 91.5% 29.1%
6xzqA01 3.40.91.90 Alpha Beta › 3-Layer(aba) Sandwich › Restriction Endonuclease › Influenza RNA-dependent RNA polymerase subunit PA, endonuclease domain 0.59 48.0 3.33e-01 91.5% 54.3%
4f03B02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.56 51.0 3.54e-01 100.0% 40.7%
1tfeA02 1.10.286.20 Mainly Alpha › Orthogonal Bundle › GTP Cyclohydrolase I; Chain A, domain 1 › 0.55 37.0 3.77e-01 74.5% 97.8%
ECOD (20)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4058428 101.1.11.0 ↗ alpha arrays › HTH › HTH › Ribbon-helix-helix 0.92 71.0 6.67e-01 83.0% 69.1%
3504504 101.1.11.2 ↗ alpha arrays › HTH › HTH › Ribbon-helix-helix › RHH_1 0.90 64.0 7.32e-01 74.5% 100.0%
5076430 101.1.11.0 ↗ alpha arrays › HTH › HTH › Ribbon-helix-helix 0.89 71.0 6.25e-01 91.5% 61.5%
4244028 101.1.1.107 ↗ alpha arrays › HTH › HTH › Three-helical HTH › DUF134 0.89 64.0 5.88e-01 76.6% 60.0%
3941449 101.1.11.42 ↗ alpha arrays › HTH › HTH › Ribbon-helix-helix › ParD_like 0.88 71.0 6.15e-01 89.4% 58.6%
4375217 101.1.11.0 ↗ alpha arrays › HTH › HTH › Ribbon-helix-helix 0.88 68.0 5.50e-01 91.5% 47.5%
4928595 101.1.11.0 ↗ alpha arrays › HTH › HTH › Ribbon-helix-helix 0.87 77.0 5.84e-01 100.0% 43.8%
3243507 101.1.1.289 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HOCHOB 0.86 69.0 6.08e-01 89.4% 61.5%
3726114 101.1.11.0 ↗ alpha arrays › HTH › HTH › Ribbon-helix-helix 0.86 78.0 6.59e-01 100.0% 85.3%
5013590 101.1.11.0 ↗ alpha arrays › HTH › HTH › Ribbon-helix-helix 0.85 60.0 6.21e-01 78.7% 77.8%
5072014 101.1.11.0 ↗ alpha arrays › HTH › HTH › Ribbon-helix-helix 0.84 75.0 6.33e-01 100.0% 61.3%
3264671 101.1.2.304 ↗ alpha arrays › HTH › HTH › winged helix domain › E3_UFM1_ligase 0.84 63.0 5.23e-01 83.0% 47.5%
4951511 101.1.11.0 ↗ alpha arrays › HTH › HTH › Ribbon-helix-helix 0.83 65.0 6.41e-01 89.4% 82.0%
3953501 101.1.11.0 ↗ alpha arrays › HTH › HTH › Ribbon-helix-helix 0.79 69.0 6.07e-01 100.0% 67.1%
3586991 101.1.11.0 ↗ alpha arrays › HTH › HTH › Ribbon-helix-helix 0.78 69.0 5.77e-01 95.7% 60.0%
4946063 101.1.11.0 ↗ alpha arrays › HTH › HTH › Ribbon-helix-helix 0.76 67.0 6.34e-01 97.9% 85.5%
4674798 3430.1.1.1 ↗ a+b complex topology › Primosome assembly protein PriA 3' DNA-binding domain › Primosome assembly protein PriA 3' DNA-binding domain › Primosome assembly protein PriA 3' DNA-binding domain › PriA_3primeBD 0.75 54.0 4.05e-01 74.5% 67.3%
147067 3276.1.1.1 ↗ alpha arrays › N-terminal domain in MogR repressor › N-terminal domain in MogR repressor › N-terminal domain in MogR repressor › MogR_DNAbind 0.72 57.0 5.12e-01 89.4% 62.5%
4651138 4957.1.1.0 ↗ a+b complex topology › helical domain in yeast RNA-polymerases › third helical domain in yeast RNA-polymerase II beta-prime subunit › third helical domain in yeast RNA-polymerase II beta-prime subunit 0.65 46.0 4.23e-01 74.5% 58.3%
3271267 568.1.1.0 ↗ few secondary structure elements › p8-MTCP1-related › p8-MTCP1-related › p8-MTCP1-related 0.64 43.0 3.93e-01 80.9% 55.0%