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MG592398.1__AUR81800.1__NVP1013O_53__00053

Bact-Vir

MG592398.1__AUR81800.1__NVP1013O_53__00053

Identity

Accession:
MG592398 ↗
Kingdom:
phage

Quality

82.2 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-66
PDB
Domain cluster: representative
CATH (37)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3ghjA00 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.75 55.0 4.47e-01 93.8% 43.1%
2rk9B00 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.73 53.0 4.34e-01 90.8% 42.7%
3zi1A02 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.72 54.0 4.13e-01 90.8% 35.9%
1xqaA01 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.71 49.0 4.16e-01 93.8% 43.6%
3cz8A02 3.10.50.10 Alpha Beta › Roll › Chitinase A; domain 3 › 0.68 54.0 5.69e-01 100.0% 98.2%
3e5dA00 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.68 52.0 4.20e-01 89.2% 43.2%
4mmoA01 3.40.630.10 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases 0.68 46.0 3.04e-01 70.8% 47.0%
4e6fA00 3.30.530.80 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › 0.67 54.0 3.94e-01 87.7% 47.4%
4a53A01 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.65 37.0 3.78e-01 72.3% 56.5%
2laeA00 3.30.310.170 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Outer membrane protein assembly factor BamC 0.65 47.0 3.97e-01 80.0% 58.5%
5jh8A02 3.10.50.10 Alpha Beta › Roll › Chitinase A; domain 3 › 0.63 47.0 4.68e-01 100.0% 80.6%
4lqbA00 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.60 45.0 3.67e-01 89.2% 40.8%
3kolA01 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.59 48.0 3.83e-01 95.4% 43.9%
4huzA02 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.59 51.0 4.00e-01 100.0% 84.8%
3bxwA03 3.10.50.10 Alpha Beta › Roll › Chitinase A; domain 3 › 0.59 45.0 4.71e-01 100.0% 100.0%
2yh6D00 3.30.530.50 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › 0.57 44.0 3.77e-01 87.7% 57.3%
5dezA03 3.10.50.10 Alpha Beta › Roll › Chitinase A; domain 3 › 0.56 49.0 4.71e-01 100.0% 90.5%
3buuB00 2.50.20.10 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX 0.56 49.0 3.44e-01 100.0% 80.0%
3hyiA01 3.10.28.10 Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases 0.56 42.0 3.14e-01 84.6% 89.0%
3uaqB02 2.40.160.90 Mainly Beta › Beta Barrel › Porin › 0.56 46.0 3.61e-01 100.0% 95.1%
4wiwA02 3.10.50.10 Alpha Beta › Roll › Chitinase A; domain 3 › 0.55 49.0 4.83e-01 100.0% 95.7%
3nybA02 3.30.460.10 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 0.55 46.0 3.99e-01 100.0% 72.7%
2ewvA01 3.30.450.90 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.55 41.0 3.67e-01 86.2% 99.0%
4py5A01 3.30.310.10 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › TATA-Binding Protein 0.54 36.0 3.51e-01 96.9% 61.1%
1fohA02 3.30.9.10 Alpha Beta › 2-Layer Sandwich › D-Amino Acid Oxidase; Chain A, domain 2 › D-Amino Acid Oxidase, subunit A, domain 2 0.54 38.0 2.85e-01 75.4% 40.8%
1owqA02 3.10.50.10 Alpha Beta › Roll › Chitinase A; domain 3 › 0.54 45.0 4.51e-01 100.0% 98.5%
4emoC00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.53 47.0 3.92e-01 100.0% 62.1%
2basA03 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.53 48.0 3.95e-01 100.0% 72.4%
2osxA01 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.53 46.0 4.04e-01 98.5% 79.8%
1wguA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.52 43.0 3.75e-01 100.0% 81.7%
4ns4A00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.52 41.0 2.83e-01 92.3% 77.9%
2j3wC00 3.30.450.70 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.52 44.0 3.56e-01 100.0% 54.8%
1je0C00 3.40.50.1580 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nucleoside phosphorylase domain 0.51 43.0 3.08e-01 100.0% 93.4%
3zfnA02 2.30.140.40 Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Pestivirus Npro endopeptidase C53, interaction domain 0.51 37.0 3.87e-01 100.0% 89.5%
4hdoA03 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.51 44.0 3.96e-01 100.0% 70.7%
3oz2A02 3.30.9.10 Alpha Beta › 2-Layer Sandwich › D-Amino Acid Oxidase; Chain A, domain 2 › D-Amino Acid Oxidase, subunit A, domain 2 0.50 33.0 2.53e-01 100.0% 27.5%
5x6vF00 3.30.450.190 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.50 44.0 3.66e-01 100.0% 60.2%
ECOD (56)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
134195 211.1.1.1 a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase 0.75 55.0 5.80e-01 93.8% 87.7%
3880739 211.1.1.17 a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › GLOD4_C 0.73 55.0 4.08e-01 90.8% 32.5%
166126 211.1.1.0 a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 0.72 52.0 5.69e-01 90.8% 96.2%
3283266 211.1.1.1 a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase 0.72 54.0 5.45e-01 90.8% 80.0%
1160760 211.1.1.17 a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › GLOD4_C 0.72 54.0 5.58e-01 90.8% 86.7%
3969104 211.1.1.1 a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase 0.71 52.0 5.09e-01 90.8% 71.4%
5013051 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.70 47.0 3.79e-01 70.8% 67.7%
4283597 211.1.1.1 a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase 0.70 50.0 5.15e-01 89.2% 81.7%
4973219 211.1.1.1 a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase 0.70 49.0 3.69e-01 93.8% 31.0%
3379703 211.1.1.1 a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase 0.69 49.0 4.90e-01 89.2% 75.4%
5006508 211.1.1.1 a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase 0.68 52.0 5.01e-01 90.8% 73.0%
2405669 211.1.1.1 a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase 0.68 51.0 4.92e-01 90.8% 71.6%
3280981 211.1.1.1 a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase 0.67 51.0 4.02e-01 93.8% 39.3%
5073891 331.3.1.0 a+b two layers › TBP-like › Bet v1-like › Bet v1-like 0.67 51.0 4.37e-01 81.5% 57.0%
5024071 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.64 44.0 3.70e-01 72.3% 95.7%
3255583 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.63 42.0 4.86e-01 96.9% 100.0%
3587446 211.1.1.1 a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase 0.62 47.0 3.61e-01 89.2% 35.9%
3960994 7579.1.1.0 a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases 0.62 46.0 3.00e-01 81.5% 38.4%
4994516 316.1.1.2 a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › NTP_transf_2 0.62 49.0 3.82e-01 89.2% 73.5%
4228206 708.1.1.0 beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain 0.62 48.0 4.60e-01 89.2% 77.5%
4559431 331.22.1.2 a+b two layers › TBP-like › Outer membrane protein assembly factor BamC › Outer membrane protein assembly factor BamC › PF29358 0.62 45.0 3.17e-01 78.5% 42.7%
4156614 316.1.1.1 a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › PolyA_pol 0.62 54.0 4.32e-01 100.0% 49.6%
3520245 316.1.1.11 a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › GrpB 0.61 54.0 3.98e-01 100.0% 44.6%
3281703 211.1.1.0 a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 0.61 48.0 4.61e-01 89.2% 74.7%
4146108 316.1.1.1 a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › PolyA_pol 0.61 53.0 4.43e-01 100.0% 55.7%
4115593 2002.1.1.30 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Glyco_hydro_18 0.61 47.0 3.11e-01 100.0% 17.8%
4236828 331.22.1.2 a+b two layers › TBP-like › Outer membrane protein assembly factor BamC › Outer membrane protein assembly factor BamC › PF29358 0.61 45.0 3.28e-01 80.0% 47.2%
1761201 211.1.1.0 a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 0.60 45.0 4.61e-01 89.2% 82.8%
2530280 284.2.1.0 a+b two layers › FKBP-like › Chitinase insertion domain › Chitinase insertion domain 0.59 48.0 4.93e-01 100.0% 100.0%
3964334 3012.1.1.0 a+b two layers › Cof C2 cap domain › Cof C2 cap domain › Cof C2 cap domain 0.59 41.0 3.94e-01 72.3% 93.3%
4944306 316.1.1.1 a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › PolyA_pol 0.59 51.0 3.81e-01 100.0% 38.3%
4226159 284.2.1.0 a+b two layers › FKBP-like › Chitinase insertion domain › Chitinase insertion domain 0.59 51.0 4.92e-01 100.0% 100.0%
4962784 211.1.1.0 a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 0.59 51.0 3.83e-01 98.5% 75.2%
4992891 331.16.1.1 a+b two layers › TBP-like › TA0095-like › TA0095-like › DUF5611 0.57 42.0 3.69e-01 83.1% 52.0%
3290094 211.1.1.1 a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase 0.56 49.0 3.95e-01 100.0% 90.8%
4950373 873.1.1.0 a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain 0.56 43.0 3.52e-01 89.2% 74.3%
3559030 2002.1.1.30 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Glyco_hydro_18 0.56 47.0 3.04e-01 100.0% 22.0%
2105165 284.2.1.0 a+b two layers › FKBP-like › Chitinase insertion domain › Chitinase insertion domain 0.55 45.0 4.53e-01 100.0% 98.6%
3258669 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.54 37.0 3.32e-01 73.8% 95.0%
3168516 223.2.1.10 a+b three layers › Profilin-like › profilin-like › profilin-like › Gtr1_RagA 0.54 49.0 3.69e-01 100.0% 61.3%
3665094 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.54 47.0 2.93e-01 98.5% 100.0%
3751173 4357.1.1.0 beta barrels › WWE domain › WWE domain › WWE domain 0.54 44.0 4.28e-01 100.0% 94.7%
3587228 211.1.1.0 a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 0.53 41.0 4.03e-01 90.8% 77.3%
3657654 1.1.1.9 beta barrels › cradle loop barrel › RIFT-related › acid protease › TAXi_C 0.53 40.0 2.81e-01 83.1% 71.6%
3929349 5086.1.1.0 alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins 0.53 39.0 2.91e-01 90.8% 26.8%
3962201 211.1.1.0 a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 0.52 43.0 3.84e-01 95.4% 70.0%
4033096 211.1.1.0 a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 0.52 39.0 3.87e-01 90.8% 80.0%
4275468 223.1.1.95 a+b three layers › Profilin-like › sensor domains › sensor domains › NtrY_N 0.52 46.0 3.39e-01 100.0% 39.4%
3734118 223.2.1.9 a+b three layers › Profilin-like › profilin-like › profilin-like › Sedlin_N 0.52 44.0 3.32e-01 100.0% 53.2%
3995723 11.1.1.54 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › CBM_21 0.51 43.0 3.54e-01 100.0% 89.6%
5051010 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.51 37.0 3.23e-01 80.0% 50.9%
5081670 2004.1.1.99 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Terminase_6N 0.50 44.0 3.13e-01 100.0% 31.0%
3783515 222.1.1.3 a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › Acyl_CoA_thio 0.50 40.0 3.07e-01 90.8% 84.5%
4004115 220.1.1.66 beta barrels › PH domain-like › PH domain-like › PH domain-like › SOS1_NGEF_PH 0.50 43.0 3.31e-01 100.0% 44.8%
2521280 241.5.1.1 a+b two layers › Type III secretory system chaperone-like › DNA-binding C-terminal domain of the transcription factor MotA › DNA-binding C-terminal domain of the transcription factor MotA › MotCF 0.50 39.0 3.34e-01 95.4% 50.4%
3544257 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.50 41.0 3.58e-01 93.8% 66.7%