Back to structures

MG592399.1__AUR81876.1__NVP1015O_62__00062

Bact-Vir

MG592399.1__AUR81876.1__NVP1015O_62__00062

Identity

Accession:
MG592399 ↗
Kingdom:
phage

Quality

88.4 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-52
PDB
Domain cluster: representative
CATH (46)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2hc5A01 3.30.160.170 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › FlaG-like 0.76 54.0 4.24e-01 74.5% 73.5%
3cm1A00 2.30.31.20 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Sporulation-specific cell division protein SsgB 0.74 63.0 4.71e-01 100.0% 66.9%
1l1dA00 2.170.150.20 Mainly Beta › Beta Complex › Metal Binding Protein, Guanine Nucleotide Exchange Factor; Chain A › Peptide methionine sulfoxide reductase. 0.74 59.0 4.32e-01 90.2% 62.5%
3pubA02 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.67 58.0 4.13e-01 100.0% 90.7%
2cy5A00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.67 56.0 4.32e-01 100.0% 79.1%
2v3aA03 3.30.390.120 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › 0.66 46.0 4.35e-01 100.0% 59.4%
4wiaC00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.66 47.0 3.09e-01 76.5% 91.2%
1e2tA03 2.40.128.150 Mainly Beta › Beta Barrel › Lipocalin › Cysteine proteinases 0.65 54.0 4.29e-01 100.0% 72.6%
3u12A00 2.30.29.180 Mainly Beta › Roll › PH-domain like › Ubiquitin carboxyl-terminal hydrolase 26/29/37, pleckstrin homology-like domain 0.62 50.0 4.18e-01 100.0% 77.9%
2db2A01 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.62 42.0 3.52e-01 70.6% 61.7%
2d8iA01 2.30.42.10 Mainly Beta › Roll › Pdz3 Domain › PDZ domain 0.60 43.0 3.72e-01 78.4% 71.6%
3holA03 2.40.128.240 Mainly Beta › Beta Barrel › Lipocalin › 0.60 48.0 4.03e-01 90.2% 78.7%
3kljA03 3.30.390.30 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › FAD/NAD-linked reductase, C-terminal dimerisation domain 0.60 42.0 3.69e-01 100.0% 47.0%
1txdA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.59 47.0 3.81e-01 100.0% 61.2%
4perB00 3.10.130.10 Alpha Beta › Roll › P-30 Protein › Ribonuclease A-like domain 0.58 48.0 3.80e-01 94.1% 100.0%
3wirA03 2.60.420.10 Mainly Beta › Sandwich › Maltose phosphorylase, domain 3 › Maltose phosphorylase, domain 3 0.58 41.0 3.68e-01 86.3% 55.1%
2ea9A01 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.57 48.0 4.06e-01 100.0% 90.4%
2ltrA00 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.57 38.0 3.12e-01 70.6% 46.7%
1tm0A01 3.10.310.10 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 0.57 46.0 3.22e-01 90.2% 79.3%
1sxjH01 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.57 43.0 3.31e-01 100.0% 34.7%
8cukB01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.57 47.0 2.94e-01 100.0% 98.8%
3pvlA04 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.57 46.0 3.89e-01 100.0% 76.8%
3nybA02 3.30.460.10 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 0.56 45.0 3.75e-01 100.0% 71.8%
2jheA02 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.56 48.0 3.85e-01 100.0% 80.6%
3oajA02 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.56 44.0 3.27e-01 88.2% 36.1%
4gw9A02 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.56 48.0 4.04e-01 100.0% 93.5%
6w0pA02 1.50.10.10 Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › 0.56 39.0 2.26e-01 86.3% 8.6%
1ei5A01 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.55 44.0 2.70e-01 88.2% 87.9%
1h54A03 2.60.420.10 Mainly Beta › Sandwich › Maltose phosphorylase, domain 3 › Maltose phosphorylase, domain 3 0.55 38.0 3.40e-01 84.3% 51.4%
2qm4A01 2.170.210.10 Mainly Beta › Beta Complex › Dna Repair Protein Xrcc4; Chain: A, domain 1 › DNA double-strand break repair and VJ recombination XRCC4, N-terminal 0.55 44.0 3.39e-01 100.0% 61.5%
3wewA00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.55 46.0 3.07e-01 100.0% 85.0%
4huzA02 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.54 43.0 3.29e-01 100.0% 86.8%
3cz8A02 3.10.50.10 Alpha Beta › Roll › Chitinase A; domain 3 › 0.54 43.0 4.20e-01 98.0% 100.0%
2pmaA01 2.40.70.10 Mainly Beta › Beta Barrel › Cathepsin D, subunit A; domain 1 › Acid Proteases 0.53 42.0 3.34e-01 94.1% 44.6%
3tfiA00 3.30.1360.120 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › Probable tRNA modification gtpase trme; domain 1 0.53 46.0 2.79e-01 100.0% 15.4%
1s4uX00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.53 45.0 2.69e-01 94.1% 84.3%
3lifA02 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.53 45.0 3.82e-01 100.0% 77.8%
2oezA01 2.60.440.10 Mainly Beta › Sandwich › YacF-like › YacF-like domains 0.53 45.0 3.99e-01 98.0% 70.5%
7wa9A01 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.53 40.0 3.08e-01 90.2% 64.5%
5i7pA02 2.40.10.330 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.53 43.0 4.42e-01 100.0% 97.9%
3hlzB01 3.40.1000.10 Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › Mog1/PsbP, alpha/beta/alpha sandwich 0.53 40.0 3.07e-01 90.2% 62.9%
2x10A01 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.51 41.0 2.99e-01 94.1% 92.0%
7z0sE02 1.10.645.10 Mainly Alpha › Orthogonal Bundle › Cytochrome-c3 Hydrogenase; chain B › Cytochrome-c3 Hydrogenase, chain B 0.51 41.0 2.59e-01 96.1% 88.0%
2bkkA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.51 40.0 3.41e-01 90.2% 95.6%
3cpfA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.50 34.0 3.29e-01 74.5% 83.1%
2pmwB02 2.60.120.690 Mainly Beta › Sandwich › Jelly Rolls › Proprotein convertase subtilisin/kexin type 9 0.50 40.0 2.83e-01 100.0% 31.2%
ECOD (70)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4932673 375.1.1.26 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Rpr2 0.74 52.0 4.32e-01 74.5% 53.3%
3907293 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.71 60.0 4.88e-01 100.0% 71.4%
3480842 708.1.2.11 beta complex topology › ETN0001 domain-like › ETN0001 domain-like › Mss4-like › STEEP1 0.70 54.0 4.37e-01 84.3% 53.0%
4538067 244.2.1.6 a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD/NAD-linked reduatases, dimerisation (C-terminal) domain › FAD/NAD-linked reduatases, dimerisation (C-terminal) domain › Rbx_binding 0.70 49.0 4.67e-01 100.0% 63.3%
4274357 244.2.1.6 a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD/NAD-linked reduatases, dimerisation (C-terminal) domain › FAD/NAD-linked reduatases, dimerisation (C-terminal) domain › Rbx_binding 0.70 48.0 4.33e-01 100.0% 52.9%
3504843 244.2.1.6 a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD/NAD-linked reduatases, dimerisation (C-terminal) domain › FAD/NAD-linked reduatases, dimerisation (C-terminal) domain › Rbx_binding 0.70 49.0 4.44e-01 100.0% 54.3%
3238997 9.1.1.0 beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.69 50.0 3.63e-01 76.5% 66.2%
4928403 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.69 60.0 4.30e-01 100.0% 73.5%
4093535 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.69 56.0 4.35e-01 100.0% 54.6%
4202852 375.1.1.26 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Rpr2 0.67 46.0 3.69e-01 72.5% 45.7%
3584249 220.1.1.132 beta barrels › PH domain-like › PH domain-like › PH domain-like › KRIT1_FRMD8_FERM_C 0.67 54.0 4.44e-01 100.0% 67.3%
1842572 6.1.1.6 beta duplicates or obligate multimers › beta-Trefoil › beta-Trefoil › beta-Trefoil › Lipoprotein_11 0.67 57.0 4.10e-01 100.0% 96.1%
3606204 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.66 52.0 4.09e-01 100.0% 58.5%
4055111 4.1.1.7 beta barrels › SH3 › SH3 › SH3 › KOW,ribosomal_L24 0.65 43.0 3.33e-01 70.6% 96.0%
3627778 220.1.1.64 beta barrels › PH domain-like › PH domain-like › PH domain-like › FERM_C1_MyoVII 0.65 53.0 4.44e-01 100.0% 72.0%
3241979 220.1.1.7 beta barrels › PH domain-like › PH domain-like › PH domain-like › IRS 0.64 51.0 4.29e-01 100.0% 70.5%
3963678 243.3.1.0 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.64 50.0 4.59e-01 84.3% 75.4%
4945272 220.5.1.2 beta barrels › PH domain-like › NucS N-terminal domain › NucS N-terminal domain › NucS_C 0.63 54.0 4.13e-01 100.0% 60.0%
5055513 220.5.1.1 beta barrels › PH domain-like › NucS N-terminal domain › NucS N-terminal domain › NucS_N 0.63 54.0 4.18e-01 100.0% 62.5%
4458952 220.1.1.4 beta barrels › PH domain-like › PH domain-like › PH domain-like › Ran_BP1 0.63 52.0 4.00e-01 100.0% 64.4%
3709251 5.1.2.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed 0.62 51.0 3.21e-01 96.1% 97.8%
3730739 220.1.1.4 beta barrels › PH domain-like › PH domain-like › PH domain-like › Ran_BP1 0.62 53.0 3.99e-01 100.0% 69.2%
3705153 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.62 49.0 3.84e-01 100.0% 74.1%
3345277 2003.1.5.31 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › GRAS 0.61 54.0 3.17e-01 100.0% 34.0%
4024012 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.60 41.0 2.77e-01 70.6% 22.7%
4945424 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.60 52.0 3.92e-01 100.0% 62.3%
5035552 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.60 51.0 3.32e-01 100.0% 97.6%
3971124 223.1.1.58 a+b three layers › Profilin-like › sensor domains › sensor domains › 2CSK_N 0.59 52.0 4.02e-01 100.0% 51.3%
1499696 12.6.1.1 beta sandwiches › Glycosyl hydrolase domain-like › Glycoside hydrolase family 127 middle domain-related › Glycoside hydrolase family 127 middle domain-related › Glyco_hydro_65C 0.59 41.0 3.75e-01 86.3% 56.1%
4926892 220.1.1.87 beta barrels › PH domain-like › PH domain-like › PH domain-like › bPH_3 0.59 48.0 3.87e-01 100.0% 71.3%
3378706 211.1.1.0 a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 0.58 47.0 4.14e-01 94.1% 63.7%
3246854 386.1.1.0 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.58 46.0 4.27e-01 98.0% 70.8%
4317800 223.1.1.0 a+b three layers › Profilin-like › sensor domains › sensor domains 0.58 49.0 3.67e-01 100.0% 42.9%
4199524 223.1.1.6 a+b three layers › Profilin-like › sensor domains › sensor domains › dCache_1 0.57 50.0 3.25e-01 100.0% 29.4%
3784907 896.1.1.3 a+b two layers › SRP9/14-like › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › SRP9-21 0.57 45.0 3.91e-01 92.2% 61.2%
4176559 814.1.1.2 a+b two layers › Chorismate lyase › Chorismate lyase › Chorismate lyase › Chor_lyase 0.57 49.0 3.54e-01 100.0% 84.5%
4051921 221.4.1.1 a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX 0.57 47.0 3.23e-01 94.1% 83.5%
4459946 223.1.1.6 a+b three layers › Profilin-like › sensor domains › sensor domains › dCache_1 0.57 49.0 3.15e-01 100.0% 28.6%
3970193 319.3.1.0 beta sandwiches › HSP20-like › B2 domain of PilQ › B2 domain of PilQ 0.57 43.0 3.53e-01 100.0% 44.2%
None 0.57 49.0 3.15e-01 100.0% 29.0%
3718669 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.57 46.0 2.83e-01 100.0% 88.5%
4040016 814.1.1.2 a+b two layers › Chorismate lyase › Chorismate lyase › Chorismate lyase › Chor_lyase 0.57 47.0 3.57e-01 100.0% 86.2%
5007262 244.2.1.7 a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD/NAD-linked reduatases, dimerisation (C-terminal) domain › FAD/NAD-linked reduatases, dimerisation (C-terminal) domain › Rubredoxin_C 0.57 43.0 3.46e-01 100.0% 42.0%
3165950 5084.1.1.0 beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like 0.56 45.0 2.94e-01 98.0% 86.1%
3861601 3369.1.1.1 beta meanders › lysosome-associated membrane protein LAMP-3 › lysosome-associated membrane protein LAMP-3 › lysosome-associated membrane protein LAMP-3 › Lamp2-like_luminal 0.56 39.0 2.79e-01 72.5% 79.1%
4956405 2004.1.1.42 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › T2SSE 0.56 49.0 2.91e-01 100.0% 20.7%
4969909 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.55 48.0 3.48e-01 100.0% 52.0%
4984579 2004.1.1.42 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › T2SSE 0.55 47.0 2.79e-01 100.0% 17.7%
3615124 5.1.3.28 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › BNR_3 0.55 41.0 2.56e-01 88.2% 88.5%
3920558 223.1.1.146 a+b three layers › Profilin-like › sensor domains › sensor domains › VWA_N, VGCC_alpha2, PF30670 0.55 40.0 2.34e-01 84.3% 13.4%
3757443 223.1.1.71 a+b three layers › Profilin-like › sensor domains › sensor domains › VGCC_alpha2 0.55 47.0 2.87e-01 100.0% 26.0%
4996975 244.2.1.7 a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD/NAD-linked reduatases, dimerisation (C-terminal) domain › FAD/NAD-linked reduatases, dimerisation (C-terminal) domain › Rubredoxin_C 0.55 43.0 3.44e-01 90.2% 51.8%
3277617 223.1.1.0 a+b three layers › Profilin-like › sensor domains › sensor domains 0.54 46.0 3.73e-01 100.0% 65.7%
4309203 71.1.1.2 beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › LolA 0.54 45.0 3.19e-01 100.0% 70.0%
3463667 5.1.3.144 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › b-prop_At3g26010-like 0.54 42.0 2.68e-01 100.0% 15.2%
5014246 223.1.1.6 a+b three layers › Profilin-like › sensor domains › sensor domains › dCache_1 0.53 44.0 3.72e-01 100.0% 78.9%
3356297 5.1.2.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed 0.53 37.0 2.83e-01 88.2% 30.0%
4098695 223.1.1.6 a+b three layers › Profilin-like › sensor domains › sensor domains › dCache_1 0.53 43.0 2.87e-01 100.0% 27.3%
4932331 331.1.1.1 a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like › TBP 0.52 45.0 3.75e-01 100.0% 62.1%
4992459 4312.1.1.0 a+b two layers › RelE-like › RelE-like › RelE-like 0.52 41.0 3.82e-01 94.1% 94.3%
5009280 304.7.1.3 a+b two layers › Alpha-beta plaits › Protease propeptides/inhibitors › Protease propeptides/inhibitors › Pro-kuma_activ 0.52 44.0 3.35e-01 100.0% 83.8%
3941128 4967.1.1.19 alpha bundles › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases › RT_RNaseH_2 0.51 42.0 3.40e-01 100.0% 76.5%
3605618 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.51 42.0 3.14e-01 100.0% 78.6%
3683776 219.1.1.16 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C48 0.51 39.0 2.49e-01 88.2% 21.7%
3232539 390.1.1.7 few secondary structure elements › Hairpin loop containing domain-like › Hairpin loop containing domain-like › Hairpin loop containing domain-like › PAN_3 0.51 39.0 3.03e-01 86.3% 89.2%
3459291 5.1.3.68 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › DUF1618 0.50 44.0 2.70e-01 100.0% 83.4%
3686517 220.1.1.112 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_10 0.50 38.0 2.85e-01 92.2% 57.0%
3561487 223.1.1.108 a+b three layers › Profilin-like › sensor domains › sensor domains › VGCC_alpha2, PF30670 0.50 41.0 2.44e-01 100.0% 16.3%
3229102 207.1.1.81 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FTH 0.50 43.0 2.82e-01 100.0% 34.8%
3929103 4.26.1.0 beta barrels › SH3 › Chromatin protein Cren7 › Chromatin protein Cren7 0.50 39.0 3.83e-01 96.1% 86.7%