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MG592400.1__AUR81949.1__NVP1016O_69__00069

Bact-Vir

MG592400.1__AUR81949.1__NVP1016O_69__00069

Identity

Accession:
MG592400 ↗
Kingdom:
phage

Quality

82.6 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 8-56
PDB
Domain cluster: representative
CATH (46)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2fjrA02 2.10.109.10 Mainly Beta › Ribbon › Umud Fragment, subunit A › Umud Fragment, subunit A 0.72 58.0 4.49e-01 100.0% 39.8%
2diqA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.71 61.0 4.85e-01 100.0% 48.0%
4xtvB02 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.71 55.0 5.61e-01 100.0% 91.7%
2e6nA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.70 59.0 4.63e-01 100.0% 45.2%
2eayB02 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.69 54.0 5.46e-01 100.0% 89.8%
4dq2A03 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.69 55.0 5.66e-01 98.0% 95.7%
1whmA01 2.30.30.190 Mainly Beta › Roll › SH3 type barrels. › CAP Gly-rich-like domain 0.68 60.0 5.29e-01 100.0% 100.0%
4b9wA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.68 58.0 5.60e-01 100.0% 85.7%
2w1zA02 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.67 56.0 4.13e-01 98.0% 68.8%
4jrnA02 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.67 55.0 4.09e-01 98.0% 68.8%
3q5zA02 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.67 54.0 4.20e-01 95.9% 66.9%
3puaA01 2.60.120.650 Mainly Beta › Sandwich › Jelly Rolls › Cupin 0.66 49.0 3.02e-01 100.0% 13.6%
4b6mB00 2.30.30.190 Mainly Beta › Roll › SH3 type barrels. › CAP Gly-rich-like domain 0.66 53.0 4.72e-01 98.0% 88.6%
1hxdA03 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.66 49.0 5.10e-01 91.8% 93.0%
3ntkA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.66 54.0 4.68e-01 100.0% 57.5%
3urgA02 2.30.30.530 Mainly Beta › Roll › SH3 type barrels. › Calcium binding protein CcbP, beta-barrel domain 0.65 53.0 5.03e-01 100.0% 96.8%
5ycqA00 2.30.30.390 Mainly Beta › Roll › SH3 type barrels. › Hemimethylated DNA-binding domain 0.65 54.0 4.81e-01 100.0% 85.7%
2i5hA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.65 44.0 3.87e-01 71.4% 62.5%
1txqA00 2.30.30.190 Mainly Beta › Roll › SH3 type barrels. › CAP Gly-rich-like domain 0.65 55.0 4.87e-01 100.0% 91.9%
2ra2B00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.65 53.0 5.15e-01 100.0% 86.2%
2x5cA01 3.30.70.3590 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.63 55.0 4.53e-01 100.0% 53.8%
2egcA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.63 54.0 4.76e-01 100.0% 76.0%
4iupB01 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.62 52.0 4.89e-01 100.0% 90.3%
3m9qA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.62 49.0 4.50e-01 98.0% 86.1%
2coaA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.61 51.0 3.98e-01 100.0% 81.4%
2derA03 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.61 51.0 4.29e-01 100.0% 55.2%
1f94A00 2.10.60.10 Mainly Beta › Ribbon › CD59 › CD59 0.60 40.0 3.74e-01 100.0% 54.0%
2k57A00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.60 48.0 4.72e-01 100.0% 90.9%
1ltlA03 2.20.28.10 Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › 0.60 48.0 4.90e-01 100.0% 89.8%
7ctpA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.59 50.0 3.88e-01 100.0% 84.2%
2gfaB01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.59 47.0 4.50e-01 100.0% 87.1%
4fvdA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.58 47.0 3.99e-01 100.0% 61.7%
2pn0A02 3.10.50.30 Alpha Beta › Roll › Chitinase A; domain 3 › Transcription elongation factor, GreA/GreB, C-terminal domain 0.58 52.0 4.36e-01 100.0% 81.7%
5d3xB00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.57 47.0 3.53e-01 100.0% 61.0%
3kyfA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.56 45.0 3.65e-01 100.0% 47.4%
4ecnA02 2.60.40.3540 Mainly Beta › Sandwich › Immunoglobulin-like › Domain of unknown function DUF4458 0.55 48.0 3.58e-01 100.0% 39.3%
2f0cA02 2.60.40.1830 Mainly Beta › Sandwich › Immunoglobulin-like › Phage tail base-plate Siphoviridae RBP, head domain 0.55 41.0 3.29e-01 100.0% 39.4%
3kopA00 2.40.100.20 Mainly Beta › Beta Barrel › Cyclophilin › 0.54 43.0 3.20e-01 100.0% 99.4%
2bseA00 2.60.40.1830 Mainly Beta › Sandwich › Immunoglobulin-like › Phage tail base-plate Siphoviridae RBP, head domain 0.54 41.0 3.28e-01 100.0% 40.2%
6epkA02 3.30.67.10 Alpha Beta › 2-Layer Sandwich › Viral Envelope Glycoprotein; domain 2 › Viral Envelope Glycoprotein, domain 2 0.54 43.0 4.00e-01 100.0% 74.6%
4pofA03 2.20.28.10 Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › 0.53 44.0 4.45e-01 100.0% 92.0%
3cpxA02 2.40.30.40 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Peptidase M42, domain 2 0.53 39.0 3.77e-01 100.0% 69.4%
4me3A03 2.20.28.10 Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › 0.53 45.0 4.43e-01 100.0% 90.9%
5xpyA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.52 41.0 3.42e-01 100.0% 66.7%
2ww8A01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 38.0 3.03e-01 100.0% 37.7%
2mvzA00 2.40.100.10 Mainly Beta › Beta Barrel › Cyclophilin › Cyclophilin-like 0.51 40.0 3.04e-01 100.0% 97.9%
ECOD (65)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4245466 4.1.1.28 beta barrels › SH3 › SH3 › SH3 › BPL_C 0.77 59.0 5.96e-01 100.0% 86.0%
4994895 4.15.1.2 beta barrels › SH3 › TrmB C-terminal domain-like › TrmB C-terminal domain-like › PF31112 0.75 66.0 5.61e-01 100.0% 77.5%
3816553 4.1.1.306 beta barrels › SH3 › SH3 › SH3 › SH3_VIII-1_N 0.74 58.0 5.67e-01 93.9% 78.2%
3936430 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.73 61.0 5.16e-01 100.0% 56.2%
3514906 4.1.1.9 beta barrels › SH3 › SH3 › SH3 › TUDOR 0.73 61.0 4.05e-01 100.0% 24.2%
3577505 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.72 60.0 5.04e-01 100.0% 54.1%
3313119 4.1.1.42 beta barrels › SH3 › SH3 › SH3 › Agenet 0.71 59.0 5.03e-01 100.0% 57.5%
3725153 4.1.1.286 beta barrels › SH3 › SH3 › SH3 › DUF7072 0.70 61.0 5.19e-01 98.0% 62.5%
3212772 4.8.1.6 beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Tudor-knot 0.69 59.0 5.26e-01 100.0% 75.7%
3449268 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.69 59.0 4.99e-01 100.0% 56.5%
3342793 4.1.1.42 beta barrels › SH3 › SH3 › SH3 › Agenet 0.69 60.0 4.00e-01 100.0% 25.3%
3467678 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.69 60.0 4.59e-01 100.0% 43.6%
3684646 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.69 59.0 5.07e-01 100.0% 60.0%
3931993 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.69 58.0 5.45e-01 100.0% 78.3%
4044269 4.17.1.1 beta barrels › SH3 › GatD N-terminal domain-like › GatD N-terminal domain-like › GatD_N 0.69 59.0 5.30e-01 100.0% 70.0%
4927385 4.1.1.28 beta barrels › SH3 › SH3 › SH3 › BPL_C 0.69 56.0 5.64e-01 98.0% 94.0%
3238955 4.1.1.377 beta barrels › SH3 › SH3 › SH3 › MSL3_chromo-like 0.68 58.0 5.03e-01 100.0% 70.0%
3407827 4.1.1.9 beta barrels › SH3 › SH3 › SH3 › TUDOR 0.68 56.0 4.76e-01 100.0% 54.1%
4025829 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.68 59.0 5.72e-01 100.0% 87.3%
4943056 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.68 45.0 5.24e-01 98.0% 97.1%
3490245 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.68 56.0 4.77e-01 100.0% 81.1%
3826746 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.68 59.0 5.01e-01 100.0% 60.0%
3274551 4.1.1.9 beta barrels › SH3 › SH3 › SH3 › TUDOR 0.68 58.0 5.09e-01 100.0% 64.0%
5058457 4.17.1.1 beta barrels › SH3 › GatD N-terminal domain-like › GatD N-terminal domain-like › GatD_N 0.68 58.0 5.38e-01 100.0% 75.4%
3583597 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.68 56.0 4.69e-01 98.0% 53.3%
3547093 4.1.1.9 beta barrels › SH3 › SH3 › SH3 › TUDOR 0.67 58.0 4.77e-01 100.0% 53.3%
3741680 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.67 58.0 5.64e-01 100.0% 90.9%
2557227 4.7.1.2 beta barrels › SH3 › RNase P subunit p29 › RNase P subunit p29 › ROF 0.67 56.0 4.93e-01 100.0% 66.2%
3176265 4.11.1.1 beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S24 0.67 55.0 4.02e-01 100.0% 42.6%
3407853 4.1.1.9 beta barrels › SH3 › SH3 › SH3 › TUDOR 0.66 54.0 4.49e-01 100.0% 51.1%
3744277 4.1.1.33 beta barrels › SH3 › SH3 › SH3 › Myosin_N 0.66 54.0 5.40e-01 100.0% 92.0%
3535298 4.1.1.9 beta barrels › SH3 › SH3 › SH3 › TUDOR 0.66 56.0 4.64e-01 100.0% 53.3%
3395948 4.1.1.43 beta barrels › SH3 › SH3 › SH3 › SMN_Tudor 0.65 56.0 5.44e-01 100.0% 87.3%
3247995 4.1.1.33 beta barrels › SH3 › SH3 › SH3 › Myosin_N 0.65 56.0 5.00e-01 100.0% 68.6%
3497731 220.1.1.56 beta barrels › PH domain-like › PH domain-like › PH domain-like › ASK_PH 0.65 54.0 4.09e-01 100.0% 56.3%
3979842 4.1.1.45 beta barrels › SH3 › SH3 › SH3 › DUF903 0.64 53.0 5.20e-01 100.0% 90.9%
4258307 206.1.1.1 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.64 53.0 3.40e-01 100.0% 29.3%
5027281 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.63 47.0 4.40e-01 100.0% 65.5%
3968342 4.1.1.45 beta barrels › SH3 › SH3 › SH3 › DUF903 0.63 51.0 5.03e-01 100.0% 94.3%
3977126 4.1.1.45 beta barrels › SH3 › SH3 › SH3 › DUF903 0.62 53.0 5.14e-01 100.0% 90.9%
3503815 4.1.1.9 beta barrels › SH3 › SH3 › SH3 › TUDOR 0.62 51.0 4.37e-01 98.0% 57.6%
3769507 4.1.1.31 beta barrels › SH3 › SH3 › SH3 › Spin-Ssty 0.61 52.0 4.70e-01 100.0% 71.4%
3512143 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.61 54.0 4.95e-01 100.0% 76.9%
3662072 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.61 51.0 3.93e-01 98.0% 40.8%
3328891 4.1.1.296 beta barrels › SH3 › SH3 › SH3 › TDBD 0.61 53.0 4.86e-01 100.0% 95.4%
3621303 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.61 48.0 3.75e-01 100.0% 56.2%
5080093 5.1.5.232 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › Reg_prop 0.60 47.0 2.65e-01 89.8% 11.8%
3612184 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.60 49.0 4.74e-01 100.0% 88.3%
3342760 2007.1.1.1 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Class I glutamine amidotransferase-like › GATase 0.59 45.0 3.18e-01 100.0% 26.5%
4863931 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.59 51.0 4.65e-01 100.0% 77.6%
4405204 1.1.12.1 beta barrels › cradle loop barrel › RIFT-related › barrel domain in QueA-like proteins › Queuosine_synth 0.59 51.0 4.40e-01 100.0% 100.0%
3876103 593.1.1.1 alpha bundles › GroEL equatorial domain-like › GroEL equatorial domain-like › GroEL equatorial domain-like › Cpn60_TCP1 0.58 50.0 3.04e-01 98.0% 15.4%
3742052 12.1.1.0 beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain 0.58 45.0 3.72e-01 98.0% 48.2%
3236987 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.57 47.0 3.72e-01 100.0% 68.7%
3209104 206.1.1.1 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.56 46.0 2.91e-01 98.0% 21.3%
4995694 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.56 45.0 4.45e-01 100.0% 90.9%
4990489 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.56 49.0 4.90e-01 100.0% 94.0%
3473704 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.54 45.0 3.87e-01 100.0% 78.8%
4330559 301.9.1.1 a+b three layers › Bacillus chorismate mutase-like › HypA Ni-binding domain › HypA Ni-binding domain › HypA 0.54 48.0 3.64e-01 100.0% 59.1%
4593851 301.9.1.1 a+b three layers › Bacillus chorismate mutase-like › HypA Ni-binding domain › HypA Ni-binding domain › HypA 0.53 49.0 3.70e-01 100.0% 61.8%
3218780 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.53 47.0 4.58e-01 98.0% 96.2%
4183914 301.9.1.1 a+b three layers › Bacillus chorismate mutase-like › HypA Ni-binding domain › HypA Ni-binding domain › HypA 0.53 49.0 3.64e-01 100.0% 59.1%
4469129 301.9.1.1 a+b three layers › Bacillus chorismate mutase-like › HypA Ni-binding domain › HypA Ni-binding domain › HypA 0.53 46.0 3.53e-01 100.0% 59.1%
4172488 2492.1.1.47 a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › YwqJ-deaminase 0.53 44.0 3.26e-01 100.0% 56.6%
3580292 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.52 46.0 4.45e-01 100.0% 94.5%