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MG592405.1__AUR82168.1__NVP1021C_05__00005

Bact-Vir

MG592405.1__AUR82168.1__NVP1021C_05__00005

Identity

Accession:
MG592405 ↗
Kingdom:
phage

Quality

88.6 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-83
PDB
D2 high residues 102-175
PDB
CATH (43)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3gqbA01 2.40.30.20 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.75 62.0 6.34e-01 97.3% 94.4%
6oqrA01 2.40.30.20 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.75 61.0 5.72e-01 97.3% 73.3%
2wssA01 2.40.30.20 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.74 61.0 5.63e-01 97.3% 71.0%
2v31A01 2.40.30.180 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Ubiquitin-activating enzyme E1, FCCH domain 0.73 64.0 5.92e-01 98.6% 83.5%
3qtgA02 2.40.33.10 Mainly Beta › Beta Barrel › M1 Pyruvate Kinase; Domain 3 › PK beta-barrel domain-like 0.72 61.0 5.67e-01 94.6% 91.5%
1vw3C01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.71 64.0 5.27e-01 100.0% 70.2%
6tdyD01 2.40.10.170 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.71 60.0 6.05e-01 95.9% 96.0%
3okxB00 2.40.30.70 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › YaeB-like 0.70 59.0 4.69e-01 91.9% 80.5%
3gg8C03 2.40.33.10 Mainly Beta › Beta Barrel › M1 Pyruvate Kinase; Domain 3 › PK beta-barrel domain-like 0.68 57.0 5.29e-01 94.6% 93.8%
1a8pA01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.68 60.0 5.59e-01 100.0% 95.8%
1qfjA01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.68 57.0 5.38e-01 95.9% 94.5%
2v3mA00 2.40.10.230 Mainly Beta › Beta Barrel › Thrombin, subunit H › Probable tRNA pseudouridine synthase domain 0.67 59.0 5.54e-01 100.0% 85.1%
8eq1A01 2.40.33.10 Mainly Beta › Beta Barrel › M1 Pyruvate Kinase; Domain 3 › PK beta-barrel domain-like 0.67 54.0 5.19e-01 90.5% 100.0%
4wqmA02 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.67 58.0 5.30e-01 98.6% 92.9%
2eixA01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.65 57.0 5.11e-01 100.0% 89.6%
4zgnB00 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.65 44.0 3.97e-01 70.3% 55.3%
4g6iC02 2.40.30.20 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.65 57.0 5.31e-01 100.0% 86.2%
2gpjA01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.65 56.0 5.17e-01 100.0% 95.0%
3cp0A00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.63 39.0 4.12e-01 98.6% 71.4%
4k35A02 2.70.98.30 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Golgi alpha-mannosidase II; domain 4 0.62 49.0 3.62e-01 86.5% 67.2%
1v0fB03 2.40.30.20 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.62 52.0 5.05e-01 97.3% 97.6%
1mrzB02 2.40.30.30 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Riboflavin kinase-like 0.60 51.0 4.52e-01 97.3% 66.1%
3zpeA00 2.60.90.50 Mainly Beta › Sandwich › Adenovirus Type 5 Fiber Protein (Receptor Binding Domain) › 0.60 52.0 4.31e-01 100.0% 60.1%
4kbxA01 2.40.37.30 Mainly Beta › Beta Barrel › Lyase, Ornithine Decarboxylase; Chain A, domain 1 › 0.60 51.0 3.72e-01 100.0% 80.8%
3zn6A02 2.60.40.3410 Mainly Beta › Sandwich › Immunoglobulin-like › 0.59 49.0 4.71e-01 93.2% 98.9%
4j27A02 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.59 48.0 4.54e-01 100.0% 75.3%
3p8bB02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.58 40.0 4.36e-01 71.6% 96.8%
1whoA00 2.60.40.760 Mainly Beta › Sandwich › Immunoglobulin-like › Expansin, cellulose-binding-like domain 0.56 46.0 4.31e-01 94.6% 97.9%
3tssA02 2.40.50.110 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.55 35.0 3.57e-01 97.3% 67.6%
4kx7A01 2.60.40.1730 Mainly Beta › Sandwich › Immunoglobulin-like › tricorn interacting facor f3 domain 0.54 45.0 3.37e-01 98.6% 39.7%
2vbkA00 2.160.20.10 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Single-stranded right-handed beta-helix, Pectin lyase-like 0.54 43.0 2.68e-01 97.3% 13.3%
2v4dE01 2.40.420.20 Mainly Beta › Beta Barrel › conserved putative lor/sdh protein from methanococcus maripaludis s2 fold › 0.54 43.0 4.21e-01 89.2% 81.0%
3t4nA01 3.30.310.80 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Kinase associated domain 1, KA1 0.53 37.0 3.48e-01 73.0% 100.0%
4b96A00 2.60.40.710 Mainly Beta › Sandwich › Immunoglobulin-like › Endoglucanase-like 0.53 43.0 3.56e-01 94.6% 92.1%
5axgA03 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.53 45.0 3.88e-01 100.0% 73.8%
4mybA00 3.90.550.10 Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 0.53 40.0 2.99e-01 85.1% 65.0%
2w91A02 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.52 45.0 3.45e-01 100.0% 42.9%
3lnnA01 2.40.420.20 Mainly Beta › Beta Barrel › conserved putative lor/sdh protein from methanococcus maripaludis s2 fold › 0.52 41.0 3.88e-01 87.8% 79.1%
3vmnA03 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.52 43.0 3.62e-01 98.6% 72.5%
1iarB01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 43.0 4.03e-01 97.3% 81.2%
2o3oA02 3.30.310.160 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › YycH protein, domain 2 0.51 37.0 3.24e-01 78.4% 89.2%
4odbA00 2.60.90.20 Mainly Beta › Sandwich › Adenovirus Type 5 Fiber Protein (Receptor Binding Domain) › Virus attachment protein , globular domain 0.51 41.0 3.39e-01 97.3% 61.1%
4k7jA02 2.60.120.1360 Mainly Beta › Sandwich › Jelly Rolls › 0.51 43.0 3.71e-01 98.6% 96.7%
ECOD (85)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5056460 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.90 80.0 7.96e-01 97.3% 92.0%
5078307 11.21.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Ig-like domain in tailspike protein › Ig-like domain in tailspike protein 0.90 81.0 8.10e-01 94.6% 98.7%
3272448 11.21.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Ig-like domain in tailspike protein › Ig-like domain in tailspike protein 0.87 79.0 7.21e-01 97.3% 86.3%
1954233 11.21.1.1 beta sandwiches › Immunoglobulin-like beta-sandwich › Ig-like domain in tailspike protein › Ig-like domain in tailspike protein › TSP_Ig-like 0.86 81.0 7.55e-01 100.0% 98.9%
1714452 11.21.1.1 beta sandwiches › Immunoglobulin-like beta-sandwich › Ig-like domain in tailspike protein › Ig-like domain in tailspike protein › TSP_Ig-like 0.86 80.0 7.53e-01 100.0% 98.9%
5079674 11.21.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Ig-like domain in tailspike protein › Ig-like domain in tailspike protein 0.84 78.0 7.80e-01 100.0% 98.7%
3513769 1.1.13.0 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.83 78.0 7.83e-01 100.0% 98.7%
3291083 11.21.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Ig-like domain in tailspike protein › Ig-like domain in tailspike protein 0.83 77.0 7.16e-01 100.0% 95.6%
1714447 11.21.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Ig-like domain in tailspike protein › Ig-like domain in tailspike protein 0.82 76.0 6.12e-01 100.0% 66.7%
5078309 11.21.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Ig-like domain in tailspike protein › Ig-like domain in tailspike protein 0.81 72.0 7.03e-01 95.9% 97.5%
3964292 1.1.13.38 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage_BR0599 0.80 74.0 6.36e-01 100.0% 69.1%
4217174 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.80 69.0 7.06e-01 100.0% 98.6%
3973332 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.79 68.0 6.81e-01 97.3% 92.0%
4026674 11.21.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Ig-like domain in tailspike protein › Ig-like domain in tailspike protein 0.78 71.0 6.97e-01 100.0% 95.0%
3597282 11.21.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Ig-like domain in tailspike protein › Ig-like domain in tailspike protein 0.78 71.0 6.92e-01 100.0% 96.2%
5081809 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.75 61.0 6.40e-01 94.6% 100.0%
3973553 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.75 62.0 6.36e-01 98.6% 95.7%
4526316 1.1.7.17 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.74 60.0 5.55e-01 97.3% 69.5%
4273414 1.1.7.17 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.74 62.0 6.33e-01 100.0% 97.1%
4038642 1.1.7.17 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.74 61.0 6.30e-01 100.0% 97.1%
3542635 1.1.7.9 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › tRNA-synt_2c 0.73 65.0 5.34e-01 100.0% 68.1%
3204011 1.1.7.17 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.73 61.0 5.78e-01 98.6% 76.7%
3975132 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.73 61.0 5.77e-01 100.0% 76.7%
4163711 1.1.7.17 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.73 59.0 5.66e-01 97.3% 77.6%
1516038 1.1.15.0 beta barrels › cradle loop barrel › RIFT-related › PK beta-barrel domain-like 0.72 61.0 5.67e-01 94.6% 91.5%
3602819 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.72 64.0 5.87e-01 98.6% 93.7%
4984743 1.1.15.1 beta barrels › cradle loop barrel › RIFT-related › PK beta-barrel domain-like › PK 0.72 61.0 5.59e-01 93.2% 92.6%
4194551 1.1.7.17 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.72 61.0 6.08e-01 97.3% 92.0%
4051617 1.1.7.9 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › tRNA-synt_2c 0.72 62.0 5.30e-01 98.6% 72.8%
5012839 1.1.7.13 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › TrmO 0.71 60.0 4.81e-01 91.9% 81.4%
3617006 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.71 62.0 5.43e-01 97.3% 83.6%
4379635 1.1.15.1 beta barrels › cradle loop barrel › RIFT-related › PK beta-barrel domain-like › PK 0.71 61.0 5.61e-01 95.9% 94.7%
4204303 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.70 58.0 5.49e-01 100.0% 75.6%
4108035 1.1.7.9 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › tRNA-synt_2c 0.70 61.0 5.06e-01 98.6% 83.0%
4949379 1.1.15.1 beta barrels › cradle loop barrel › RIFT-related › PK beta-barrel domain-like › PK 0.70 60.0 5.48e-01 95.9% 90.0%
5057245 1.1.15.0 beta barrels › cradle loop barrel › RIFT-related › PK beta-barrel domain-like 0.70 59.0 5.57e-01 94.6% 91.1%
2556060 1.1.7.17 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.70 61.0 6.08e-01 100.0% 96.2%
4890345 1.1.7.17 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.70 62.0 5.94e-01 100.0% 87.1%
4934153 1.1.7.9 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › tRNA-synt_2c 0.70 61.0 5.67e-01 98.6% 84.2%
4337888 1.1.15.1 beta barrels › cradle loop barrel › RIFT-related › PK beta-barrel domain-like › PK 0.70 60.0 5.43e-01 95.9% 90.0%
3996145 1.1.7.9 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › tRNA-synt_2c 0.70 61.0 5.12e-01 100.0% 70.8%
4012166 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.70 61.0 5.24e-01 100.0% 77.5%
4066146 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.69 61.0 5.45e-01 100.0% 69.5%
4350337 1.1.7.17 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.69 61.0 6.13e-01 100.0% 98.7%
3575535 1.1.7.113 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › AAA_11, AAA_12 0.69 62.0 3.77e-01 100.0% 23.9%
4402716 1.1.7.17 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.69 62.0 5.93e-01 100.0% 87.1%
4972564 1.1.15.1 beta barrels › cradle loop barrel › RIFT-related › PK beta-barrel domain-like › PK 0.69 59.0 5.44e-01 94.6% 92.6%
4080130 1.1.7.17 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.69 58.0 5.86e-01 94.6% 93.3%
4954732 1.1.15.0 beta barrels › cradle loop barrel › RIFT-related › PK beta-barrel domain-like 0.69 59.0 5.59e-01 95.9% 95.6%
4660673 1.1.7.17 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.69 61.0 5.87e-01 100.0% 90.6%
4492784 1.1.7.9 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › tRNA-synt_2c 0.69 60.0 5.17e-01 98.6% 73.3%
4162532 1.1.7.17 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.69 59.0 5.97e-01 100.0% 94.7%
3415703 1.1.15.1 beta barrels › cradle loop barrel › RIFT-related › PK beta-barrel domain-like › PK 0.69 59.0 5.44e-01 95.9% 96.8%
4011239 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.69 60.0 5.91e-01 100.0% 95.0%
4429352 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.68 61.0 5.71e-01 100.0% 85.6%
3396811 1.1.15.0 beta barrels › cradle loop barrel › RIFT-related › PK beta-barrel domain-like 0.68 58.0 5.30e-01 95.9% 94.0%
4155389 1.1.7.9 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › tRNA-synt_2c 0.68 59.0 5.19e-01 100.0% 78.3%
4402448 1.1.7.9 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › tRNA-synt_2c 0.68 59.0 5.07e-01 98.6% 81.7%
3967745 1.1.7.17 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.68 59.0 5.97e-01 97.3% 96.0%
1790393 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.68 60.0 5.85e-01 100.0% 91.5%
4010630 2004.1.1.10 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ATP-synt_ab 0.68 60.0 3.71e-01 100.0% 17.7%
4403870 1.1.7.17 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.68 58.0 5.37e-01 98.6% 74.7%
3386080 1.1.15.1 beta barrels › cradle loop barrel › RIFT-related › PK beta-barrel domain-like › PK 0.68 57.0 5.23e-01 95.9% 94.0%
4319764 1.1.7.17 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.67 60.0 5.28e-01 100.0% 69.1%
4061072 1.1.7.9 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › tRNA-synt_2c 0.67 58.0 4.97e-01 100.0% 71.2%
3742214 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.67 58.0 5.23e-01 100.0% 100.0%
3975044 1.1.7.17 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.67 58.0 5.81e-01 98.6% 97.3%
5076995 1.1.7.17 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.67 59.0 5.77e-01 100.0% 93.8%
3387360 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.67 59.0 5.67e-01 100.0% 88.2%
5050004 1.1.15.1 beta barrels › cradle loop barrel › RIFT-related › PK beta-barrel domain-like › PK 0.67 55.0 5.23e-01 94.6% 100.0%
4083044 1.1.7.17 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.66 58.0 5.78e-01 100.0% 98.7%
4625449 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.66 58.0 5.47e-01 100.0% 97.8%
3452625 1.1.7.69 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › MOV-10_beta-barrel 0.62 53.0 4.93e-01 100.0% 89.0%
2822348 10.13.1.1 beta sandwiches › jelly-roll › Calcium ATPase, transduction domain A › Calcium ATPase, transduction domain A › E1-E2_ATPase 0.56 35.0 3.45e-01 100.0% 56.0%
4970326 12.1.1.0 beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain 0.55 47.0 4.43e-01 100.0% 84.2%
1779244 12.1.1.21 beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain › Glyco_hydro_66 0.55 46.0 3.97e-01 98.6% 71.4%
184925 11.21.1.2 beta sandwiches › Immunoglobulin-like beta-sandwich › Ig-like domain in tailspike protein › Ig-like domain in tailspike protein › Tailspike_C 0.54 43.0 4.33e-01 97.3% 93.2%
4242302 4.1.1.249 beta barrels › SH3 › SH3 › SH3 › KOW2_Spt5 0.54 41.0 4.26e-01 93.2% 87.1%
3239826 4081.1.1.5 beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Peptidase_M1_N 0.53 43.0 3.28e-01 98.6% 46.4%
4525092 10.3.1.2 beta sandwiches › jelly-roll › TNF-like › TNF-like › C1q 0.53 44.0 3.80e-01 97.3% 97.7%
4371270 10.32.1.0 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.52 43.0 4.10e-01 100.0% 81.1%
3936407 10.32.1.0 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.52 42.0 4.00e-01 93.2% 82.2%
3930387 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.51 42.0 3.65e-01 93.2% 77.5%
3883597 11.1.1.1 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Cadherin 0.51 41.0 3.65e-01 93.2% 70.4%
3093592 12.1.1.21 beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain › Glyco_hydro_66 0.51 42.0 3.71e-01 100.0% 72.4%
D3 high residues 189-319
PDB
Domain cluster: representative
CATH (53)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1nlqE00 2.60.120.340 Mainly Beta › Sandwich › Jelly Rolls › Nucleoplasmin core domain 0.69 45.0 5.09e-01 99.2% 87.8%
1hx6B01 2.70.9.30 Mainly Beta › Distorted Sandwich › Adenovirus Type 2 Hexon; domain 4 › Viral coat protein p3 0.68 63.0 5.13e-01 100.0% 79.8%
2nzcB00 3.30.70.1150 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT-like. Chain A, domain 2 0.68 42.0 5.18e-01 88.5% 100.0%
7zvmA01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.67 35.0 3.95e-01 100.0% 63.7%
2e26A02 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.66 52.0 4.89e-01 100.0% 69.7%
4lr4A01 2.60.120.1420 Mainly Beta › Sandwich › Jelly Rolls › 0.65 47.0 4.29e-01 97.7% 56.2%
4h7lB00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.65 33.0 3.50e-01 99.2% 53.0%
2e9wB05 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.64 39.0 4.56e-01 87.8% 87.9%
3s1tA02 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.64 39.0 4.83e-01 84.7% 100.0%
3ht1A00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.63 33.0 3.30e-01 100.0% 46.5%
2f1fA01 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.62 38.0 4.67e-01 86.3% 98.7%
2joqA01 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.62 36.0 4.59e-01 84.0% 100.0%
2dt9A02 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.62 38.0 4.69e-01 84.7% 100.0%
6vh5C03 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.62 39.0 4.58e-01 88.5% 93.3%
1wmdA02 2.60.120.380 Mainly Beta › Sandwich › Jelly Rolls › 0.61 46.0 4.82e-01 98.5% 88.9%
3ejkA00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.60 37.0 3.48e-01 100.0% 50.3%
4aqsA01 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.60 55.0 4.47e-01 100.0% 63.3%
2bbeA00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.59 41.0 4.59e-01 89.3% 92.2%
4lejA02 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.58 36.0 3.32e-01 100.0% 46.7%
3lnlB02 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.58 38.0 4.40e-01 91.6% 96.6%
4dn9B00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.58 39.0 4.43e-01 88.5% 93.8%
1cl7I00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.57 35.0 4.25e-01 88.5% 98.8%
2n3lA00 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.57 38.0 4.49e-01 95.4% 100.0%
2bbaA00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.57 50.0 4.45e-01 100.0% 68.1%
3zn4A00 2.60.120.1180 Mainly Beta › Sandwich › Jelly Rolls › 0.57 51.0 4.95e-01 99.2% 87.2%
2f68X02 2.60.40.740 Mainly Beta › Sandwich › Immunoglobulin-like › 0.56 45.0 4.27e-01 100.0% 70.4%
1f0xA04 3.30.1370.20 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › D-lactate dehydrogenase, cap domain, subdomain 2 0.56 31.0 3.75e-01 80.9% 82.4%
4dpoB00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.56 39.0 4.39e-01 89.3% 94.1%
2e9wA04 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.56 38.0 4.20e-01 96.9% 89.2%
2od6C00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.56 42.0 4.60e-01 90.1% 97.2%
4fomA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.56 36.0 4.10e-01 90.1% 86.9%
1iujA00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.55 39.0 4.37e-01 87.8% 95.1%
3gz7B00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.55 39.0 4.32e-01 89.3% 98.0%
7k7jA01 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.54 46.0 4.18e-01 97.7% 68.6%
1sqeA00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.54 38.0 4.24e-01 88.5% 94.1%
3bm7A00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.54 40.0 4.32e-01 95.4% 95.3%
3ideA02 2.60.120.660 Mainly Beta › Sandwich › Jelly Rolls › icosahedral virus 0.54 45.0 4.45e-01 100.0% 83.2%
1q8bA00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.54 37.0 4.25e-01 90.1% 100.0%
4c47A01 2.60.40.1620 Mainly Beta › Sandwich › Immunoglobulin-like › Lipoprotein YajI-like 0.54 38.0 3.99e-01 100.0% 78.7%
1yz7A02 3.30.70.1130 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › EIF_2_alpha 0.54 36.0 4.13e-01 85.5% 97.8%
1fp5A01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 38.0 4.24e-01 96.9% 96.0%
1jv2A04 2.60.40.1530 Mainly Beta › Sandwich › Immunoglobulin-like › ntegrin, alpha v. Chain A, domain 4 0.53 49.0 4.31e-01 100.0% 81.9%
4be3A00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.53 47.0 3.61e-01 99.2% 78.2%
5wy8B03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 39.0 4.17e-01 97.7% 90.2%
1x7vA00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.53 37.0 4.16e-01 88.5% 96.9%
4jb9H01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 45.0 4.51e-01 96.9% 93.9%
3u83A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 37.0 4.13e-01 98.5% 95.0%
4nofB00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 39.0 4.18e-01 98.5% 98.1%
2nrqA00 3.30.1440.10 Alpha Beta › 2-Layer Sandwich › 50s Ribosomal Protein L5; Chain: A, › Ribosomal protein L5 0.52 43.0 4.31e-01 88.5% 89.8%
5k8mA02 3.30.70.360 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.51 43.0 4.34e-01 91.6% 100.0%
2axyA00 3.30.1370.10 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › K Homology domain, type 1 0.51 29.0 3.63e-01 79.4% 98.6%
2vfrA03 3.30.70.2530 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.50 33.0 3.95e-01 87.0% 100.0%
8ehtB01 2.60.40.1090 Mainly Beta › Sandwich › Immunoglobulin-like › Fimbrial-type adhesion domain 0.50 41.0 4.00e-01 98.5% 78.9%
ECOD (57)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4947398 304.8.1.0 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.68 40.0 5.09e-01 85.5% 100.0%
5061295 304.8.1.4 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › NikR_C 0.68 39.0 5.08e-01 85.5% 100.0%
4230510 10.4.1.1 beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain › CUB 0.68 48.0 3.97e-01 100.0% 43.2%
5041003 304.8.1.4 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › NikR_C 0.67 40.0 5.09e-01 87.8% 100.0%
4998406 304.8.1.4 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › NikR_C 0.67 41.0 5.06e-01 87.0% 98.8%
5047432 304.8.1.4 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › NikR_C 0.66 43.0 5.04e-01 96.9% 95.6%
5002193 10.1.2.0 beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.66 46.0 4.94e-01 96.9% 84.5%
3475794 10.32.1.104 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › VIR_N 0.66 50.0 5.26e-01 100.0% 86.7%
3360847 10.32.1.104 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › VIR_N 0.66 49.0 5.03e-01 100.0% 80.8%
4883559 10.2.1.33 beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Pox_Rif 0.66 59.0 5.09e-01 100.0% 79.5%
3585568 10.4.1.1 beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain › CUB 0.66 48.0 4.42e-01 100.0% 58.8%
4000826 10.4.1.1 beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain › CUB 0.65 50.0 5.03e-01 99.2% 80.0%
1111985 10.32.1.82 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › CBM-like_2 0.65 47.0 4.11e-01 97.7% 49.7%
2497010 10.2.1.54 beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Capsid_N 0.65 58.0 4.89e-01 100.0% 85.0%
3714436 10.32.1.0 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.64 48.0 4.91e-01 100.0% 79.2%
3403970 10.4.1.1 beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain › CUB 0.64 47.0 4.28e-01 100.0% 57.1%
3703651 10.32.1.0 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.64 47.0 4.88e-01 100.0% 81.6%
3948852 304.8.1.4 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › NikR_C 0.64 42.0 4.96e-01 94.7% 97.8%
3708922 10.32.1.0 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.64 48.0 4.85e-01 100.0% 79.2%
5039612 10.1.1.0 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.63 50.0 5.22e-01 100.0% 91.5%
3958239 304.8.1.0 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.63 38.0 4.72e-01 84.0% 98.8%
3607284 10.32.1.0 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.62 47.0 4.77e-01 100.0% 80.0%
4978378 304.8.1.4 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › NikR_C 0.62 40.0 4.73e-01 96.2% 100.0%
5009351 10.1.1.117 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Thermopsin 0.60 54.0 4.42e-01 100.0% 80.4%
3788037 10.32.1.4 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › EMP24_GP25L 0.59 43.0 4.63e-01 97.7% 90.0%
3886059 10.32.1.3 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › Calpain_III 0.59 45.0 4.23e-01 100.0% 66.3%
159048 304.4.1.4 a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › ABM 0.59 41.0 4.59e-01 89.3% 92.2%
3502082 11.1.1.298 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Integrin_A_Ig_3 0.58 53.0 4.54e-01 100.0% 81.9%
4004010 304.7.1.0 a+b two layers › Alpha-beta plaits › Protease propeptides/inhibitors › Protease propeptides/inhibitors 0.58 36.0 4.39e-01 83.2% 100.0%
3390703 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.58 52.0 4.60e-01 100.0% 76.4%
3890321 10.32.1.5 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › Ephrin_lbd 0.58 48.0 4.65e-01 100.0% 80.7%
3830724 207.1.1.95 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_14 0.57 47.0 2.86e-01 98.5% 13.4%
3996365 11.1.1.298 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Integrin_A_Ig_3 0.57 52.0 4.32e-01 100.0% 83.5%
4018271 10.1.1.16 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Peptidase_A4 0.56 51.0 4.15e-01 100.0% 83.3%
162810 11.1.5.22 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f › Collagen_bind 0.56 45.0 4.28e-01 100.0% 70.8%
3802666 207.1.1.133 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_1, LRR_14 0.56 46.0 3.18e-01 98.5% 24.4%
5029611 10.1.2.0 beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.56 52.0 4.60e-01 100.0% 90.3%
5034784 10.1.2.0 beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.56 49.0 4.27e-01 97.7% 81.0%
3815092 304.9.1.0 a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD 0.56 38.0 4.26e-01 89.3% 91.0%
5039141 10.1.2.184 beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) › PepX_C 0.56 50.0 4.80e-01 100.0% 86.0%
5039229 10.1.2.184 beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) › PepX_C 0.56 50.0 4.50e-01 100.0% 71.9%
3932281 11.1.1.842 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › CUT_C 0.55 39.0 3.93e-01 87.8% 70.4%
5083968 10.1.2.0 beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.55 42.0 4.36e-01 97.7% 85.6%
3700379 10.2.1.0 beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) 0.55 50.0 4.81e-01 99.2% 93.5%
3952771 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.55 41.0 4.49e-01 85.5% 96.2%
5041444 10.1.2.184 beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) › PepX_C 0.55 50.0 4.55e-01 100.0% 74.9%
4477054 10.32.1.31 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › PepX_C 0.55 49.0 4.14e-01 98.5% 73.6%
1555984 10.3.1.9 beta sandwiches › jelly-roll › TNF-like › TNF-like › Lac_Phage_Head 0.55 49.0 4.18e-01 100.0% 82.2%
4932638 11.1.5.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f 0.54 49.0 4.82e-01 100.0% 93.6%
3280361 10.32.1.31 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › PepX_C 0.54 49.0 4.01e-01 100.0% 89.6%
3580968 10.40.1.1 beta sandwiches › jelly-roll › PHR domain › PHR domain › PHR 0.54 48.0 4.52e-01 99.2% 89.1%
4022751 10.32.1.31 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › PepX_C 0.54 48.0 4.06e-01 100.0% 78.7%
5040077 10.1.2.184 beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) › PepX_C 0.54 48.0 4.32e-01 99.2% 71.4%
3231319 11.1.1.842 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › CUT_C 0.53 38.0 3.42e-01 87.8% 51.6%
5033997 10.1.2.0 beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.52 47.0 4.46e-01 100.0% 81.9%
3841433 304.161.1.0 a+b two layers › Alpha-beta plaits › Alpha-beta plait domain in TMEM16 lipid scramblase › Alpha-beta plait domain in TMEM16 lipid scramblase 0.52 40.0 3.78e-01 82.4% 91.9%
3392555 11.1.1.5 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Zona_pellucida 0.51 43.0 4.09e-01 91.6% 78.1%