←Back to structures
MG592406.1__AUR82237.1__NVP1022O_24__00024
Bact-VirMG592406.1__AUR82237.1__NVP1022O_24__00024
Identity
- Accession:
- MG592406 ↗
- Kingdom:
- phage
Quality
78.2
mean pLDDT
Taxonomy
TaxID: 1881418
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 2-73
Domain cluster:
representative
CATH (27)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4gs5A02 | 3.30.300.30 | Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › ANL, C-terminal domain | 0.66 | 45.0 | 3.97e-01 | 70.8% | 66.7% |
| 7k98B04 | 3.30.930.10 | Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 | 0.65 | 53.0 | 3.77e-01 | 91.7% | 70.9% |
| 2iusD01 | 3.30.980.40 | Alpha Beta › 2-Layer Sandwich › Threonyl-tRNA Synthetase; Chain A, domain 2 › | 0.64 | 44.0 | 4.03e-01 | 72.2% | 84.7% |
| 1egaA02 | 3.30.300.20 | Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › K homology (KH) domain | 0.64 | 44.0 | 3.89e-01 | 72.2% | 81.1% |
| 4r78A01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.63 | 42.0 | 3.87e-01 | 72.2% | 51.0% |
| 1x47A01 | 3.30.160.20 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.63 | 43.0 | 4.08e-01 | 70.8% | 70.1% |
| 1hc7A01 | 3.30.930.10 | Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 | 0.59 | 47.0 | 3.28e-01 | 90.3% | 53.2% |
| 4r80A00 | 3.10.450.630 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.57 | 40.0 | 3.94e-01 | 72.2% | 73.7% |
| 2pn2A00 | 3.30.300.20 | Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › K homology (KH) domain | 0.56 | 38.0 | 3.12e-01 | 70.8% | 61.3% |
| 2qdfA02 | 3.10.20.310 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › membrane protein fhac | 0.55 | 44.0 | 4.26e-01 | 88.9% | 95.2% |
| 2mdrA00 | 3.30.160.20 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.54 | 40.0 | 3.69e-01 | 80.6% | 60.6% |
| 6syyA01 | 2.60.40.420 | Mainly Beta › Sandwich › Immunoglobulin-like › Cupredoxins - blue copper proteins | 0.54 | 44.0 | 3.59e-01 | 90.3% | 95.7% |
| 1di2A00 | 3.30.160.20 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.54 | 37.0 | 3.77e-01 | 80.6% | 75.4% |
| 2ychA02 | 3.30.1490.300 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › | 0.53 | 40.0 | 4.29e-01 | 84.7% | 96.7% |
| 2nugB02 | 3.30.160.20 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.53 | 36.0 | 3.70e-01 | 80.6% | 73.2% |
| 1uzxA00 | 3.10.110.10 | Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme | 0.53 | 41.0 | 3.33e-01 | 97.2% | 43.6% |
| 1y88A01 | 3.40.1350.10 | Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › | 0.53 | 35.0 | 3.06e-01 | 73.6% | 40.8% |
| 6j09A02 | 3.10.20.310 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › membrane protein fhac | 0.53 | 41.0 | 4.09e-01 | 87.5% | 98.7% |
| 2gqfA01 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.52 | 43.0 | 3.02e-01 | 91.7% | 90.0% |
| 2khxA00 | 3.30.160.20 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.52 | 35.0 | 3.48e-01 | 70.8% | 79.7% |
| 1whnA01 | 3.30.160.20 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.52 | 42.0 | 3.84e-01 | 94.4% | 68.3% |
| 2x8xX01 | 3.10.20.310 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › membrane protein fhac | 0.51 | 41.0 | 4.05e-01 | 90.3% | 90.8% |
| 6j09A04 | 3.10.20.310 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › membrane protein fhac | 0.51 | 40.0 | 3.95e-01 | 87.5% | 98.7% |
| 2q5wD00 | 3.10.20.30 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Beta-grasp domain | 0.51 | 40.0 | 3.97e-01 | 90.3% | 96.1% |
| 2hc5A01 | 3.30.160.170 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › FlaG-like | 0.51 | 41.0 | 3.82e-01 | 94.4% | 76.5% |
| 2ltsA00 | 3.30.160.20 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.51 | 40.0 | 3.88e-01 | 93.1% | 77.9% |
| 2qguA01 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.51 | 35.0 | 3.21e-01 | 73.6% | 78.2% |
ECOD (37)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4012169 | 206.1.1.0 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase | 0.67 | 46.0 | 2.84e-01 | 73.6% | 12.1% |
| 4010678 | 279.1.1.2 ↗ | a+b complex topology › LDH C-terminal domain-like › LDH C-terminal domain-like › LDH C-terminal domain-like › Glyco_hydro_4C | 0.67 | 46.0 | 3.05e-01 | 72.2% | 30.0% |
| 3386744 | 310.3.1.0 ↗ | a+b two layers › RRF/tRNA synthetase additional domain-like › General secretion pathway protein M (EpsM) periplasmic domain-related › General secretion pathway protein M (EpsM) periplasmic domain-related | 0.66 | 53.0 | 4.40e-01 | 86.1% | 78.2% |
| 4113419 | 314.1.1.11 ↗ | a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › tRNA_synthFbeta | 0.66 | 52.0 | 3.78e-01 | 90.3% | 54.1% |
| 4679988 | 314.1.1.11 ↗ | a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › tRNA_synthFbeta | 0.64 | 52.0 | 3.74e-01 | 91.7% | 61.8% |
| 3963036 | 330.2.1.1 ↗ | a+b two layers › dsRBD-like › Ribosome binding protein Y (YfiA homologue) › Ribosome binding protein Y (YfiA homologue) › Ribosomal_S30AE | 0.64 | 44.0 | 4.01e-01 | 72.2% | 62.0% |
| 4024164 | 314.1.1.3 ↗ | a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › tRNA-synt_2d | 0.63 | 50.0 | 3.57e-01 | 91.7% | 45.1% |
| 3823735 | 330.1.1.1 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm | 0.61 | 45.0 | 4.25e-01 | 77.8% | 68.2% |
| 4986017 | 243.3.1.0 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin | 0.61 | 43.0 | 4.43e-01 | 76.4% | 81.4% |
| 4957877 | 221.1.1.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like | 0.60 | 47.0 | 4.80e-01 | 86.1% | 100.0% |
| 4898995 | 3121.1.1.1 ↗ | a+b duplicates or obligate multimers › Polypeptide transport-associated (POTRA) domain › Polypeptide transport-associated (POTRA) domain › Polypeptide transport-associated (POTRA) domain › POTRA | 0.58 | 38.0 | 3.60e-01 | 88.9% | 53.3% |
| 3291057 | 243.3.1.0 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin | 0.58 | 40.0 | 4.09e-01 | 72.2% | 80.0% |
| 4021128 | 3435.1.1.0 ↗ | a+b two layers › Recombination-associated protein rdgC › Recombination-associated protein rdgC › Recombination-associated protein rdgC | 0.58 | 47.0 | 3.55e-01 | 93.1% | 53.3% |
| 5043125 | 809.2.1.0 ↗ | a+b two layers › BLIP-like › BT0923-like › BT0923-like | 0.58 | 39.0 | 4.06e-01 | 70.8% | 80.0% |
| 3728854 | 330.1.1.0 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like | 0.58 | 40.0 | 4.22e-01 | 75.0% | 80.0% |
| 3651307 | 1.1.11.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › Type II restriction endonuclease effector domain › B3 | 0.58 | 40.0 | 3.48e-01 | 72.2% | 100.0% |
| 3629639 | 330.1.1.1 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm | 0.58 | 41.0 | 3.58e-01 | 76.4% | 47.8% |
| 3481102 | 330.1.1.0 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like | 0.57 | 41.0 | 3.47e-01 | 76.4% | 44.0% |
| 5075397 | 324.1.1.1 ↗ | a+b two layers › OsmC-like › OsmC-like › OsmC-like › OsmC | 0.57 | 39.0 | 3.29e-01 | 72.2% | 56.8% |
| 4881206 | 3121.1.1.1 ↗ | a+b duplicates or obligate multimers › Polypeptide transport-associated (POTRA) domain › Polypeptide transport-associated (POTRA) domain › Polypeptide transport-associated (POTRA) domain › POTRA | 0.57 | 45.0 | 4.29e-01 | 87.5% | 89.4% |
| 4580987 | 3636.1.1.0 ↗ | a+b two layers › XPD arch domain › XPD arch domain › XPD arch domain | 0.56 | 44.0 | 3.46e-01 | 86.1% | 97.5% |
| 4194213 | 330.1.1.1 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm | 0.56 | 40.0 | 4.12e-01 | 79.2% | 78.6% |
| 4972821 | 523.1.1.3 ↗ | a+b two layers › Ribosomal protein L9 C-domain › Ribosomal protein L9 C-domain › Ribosomal protein L9 C-domain › PF29994 | 0.56 | 46.0 | 3.99e-01 | 94.4% | 72.5% |
| 3284774 | 321.1.1.11 ↗ | a+b two layers › Glutamine synthetase-like › Glutamine synthetase/guanido kinase › Glutamine synthetase/guanido kinase › DUF2126 | 0.55 | 45.0 | 2.92e-01 | 94.4% | 21.1% |
| 3838862 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.54 | 39.0 | 3.15e-01 | 77.8% | 42.6% |
| 3690503 | 241.2.1.0 ↗ | a+b two layers › Type III secretory system chaperone-like › Frataxin-like › Frataxin-like | 0.54 | 36.0 | 3.20e-01 | 100.0% | 45.0% |
| 3951204 | 321.1.1.11 ↗ | a+b two layers › Glutamine synthetase-like › Glutamine synthetase/guanido kinase › Glutamine synthetase/guanido kinase › DUF2126 | 0.54 | 44.0 | 2.92e-01 | 93.1% | 23.3% |
| 3516145 | 330.1.1.1 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm | 0.53 | 38.0 | 3.73e-01 | 76.4% | 72.5% |
| 4115098 | 3121.1.1.1 ↗ | a+b duplicates or obligate multimers › Polypeptide transport-associated (POTRA) domain › Polypeptide transport-associated (POTRA) domain › Polypeptide transport-associated (POTRA) domain › POTRA | 0.53 | 42.0 | 4.08e-01 | 88.9% | 91.8% |
| 3649478 | 211.1.1.0 ↗ | a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase | 0.53 | 40.0 | 3.86e-01 | 95.8% | 71.8% |
| 3875401 | 330.1.1.5 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › DND1_DSRM | 0.53 | 36.0 | 3.91e-01 | 75.0% | 92.7% |
| 3271023 | 216.1.1.2 ↗ | a+b two layers › UBC-like › UBC-like › UBC-like › Autophagy_act_C | 0.52 | 41.0 | 3.20e-01 | 88.9% | 75.0% |
| 4001734 | 304.47.1.0 ↗ | a+b two layers › Alpha-beta plaits › SEA domain › SEA domain | 0.52 | 43.0 | 3.76e-01 | 94.4% | 80.0% |
| 3934658 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.52 | 36.0 | 3.78e-01 | 88.9% | 80.0% |
| 3608365 | 207.1.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats | 0.51 | 37.0 | 2.17e-01 | 76.4% | 9.2% |
| 3939548 | 304.114.1.0 ↗ | a+b two layers › Alpha-beta plaits › Family B DNA polymerase insertion domain › Family B DNA polymerase insertion domain | 0.51 | 43.0 | 3.98e-01 | 95.8% | 90.5% |
| 3461485 | 7518.1.1.1 ↗ | a/b three-layered sandwiches › PK C-terminal domain-like › PK C-terminal domain-like › PK C-terminal domain-like › PK_C | 0.51 | 40.0 | 3.79e-01 | 87.5% | 78.9% |