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MG592407.1__AUR82339.1__NVP1023O_30__00030
Bact-VirMG592407.1__AUR82339.1__NVP1023O_30__00030
Identity
- Accession:
- MG592407 ↗
- Kingdom:
- phage
Quality
79.8
mean pLDDT
Taxonomy
TaxID: 1881419
Cluster
View cluster (3 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 5-51
Domain cluster:
representative
CATH (17)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3p2aA01 | 2.30.30.380 | Mainly Beta › Roll › SH3 type barrels. › Zn-finger domain of Sec23/24 | 0.72 | 39.0 | 4.31e-01 | 97.9% | 66.7% |
| 1k8kA04 | 3.90.640.10 | Alpha Beta › Alpha-Beta Complex › Actin; Chain A, domain 4 › ATPase, substrate binding domain, subdomain 4 | 0.68 | 37.0 | 2.97e-01 | 76.6% | 27.2% |
| 1xhhA00 | 2.60.40.1900 | Mainly Beta › Sandwich › Immunoglobulin-like › Beta-microseminoprotein (PSP94) domain | 0.65 | 35.0 | 2.80e-01 | 93.6% | 24.2% |
| 3h95A02 | 4.10.80.100 | Few Secondary Structures › Irregular › Rhinovirus 14, subunit 4 › | 0.64 | 38.0 | 4.26e-01 | 80.9% | 86.7% |
| 2zuoA08 | 2.30.30.620 | Mainly Beta › Roll › SH3 type barrels. › | 0.63 | 36.0 | 3.39e-01 | 95.7% | 41.4% |
| 3p9aF00 | 1.10.132.80 | Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › | 0.59 | 38.0 | 2.73e-01 | 72.3% | 23.9% |
| 4qflA02 | 3.90.76.10 | Alpha Beta › Alpha-Beta Complex › Dipeptide-binding Protein; domain 1 › Dipeptide-binding Protein; Domain 1 | 0.59 | 41.0 | 2.91e-01 | 76.6% | 86.0% |
| 2dulA01 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.57 | 42.0 | 2.61e-01 | 83.0% | 86.7% |
| 5axmB00 | 3.30.70.3000 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › tRNA(His) guanylyltransferase (Thg1) | 0.55 | 44.0 | 2.92e-01 | 95.7% | 36.0% |
| 1cov400 | 4.10.80.10 | Few Secondary Structures › Irregular › Rhinovirus 14, subunit 4 › Picornavirus coat protein VP4 | 0.54 | 34.0 | 3.31e-01 | 95.7% | 52.7% |
| 2mmpA00 | 3.30.160.830 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.54 | 45.0 | 3.89e-01 | 95.7% | 81.8% |
| 4kbxA01 | 2.40.37.30 | Mainly Beta › Beta Barrel › Lyase, Ornithine Decarboxylase; Chain A, domain 1 › | 0.53 | 37.0 | 2.42e-01 | 95.7% | 15.7% |
| 2iw2A01 | 3.40.350.10 | Alpha Beta › 3-Layer(aba) Sandwich › Creatine Amidinohydrolase; Chain A, domain 1 › Creatinase/prolidase N-terminal domain | 0.52 | 40.0 | 2.75e-01 | 97.9% | 22.8% |
| 2bm0A03 | 3.30.70.870 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Elongation Factor G (Translational Gtpase), domain 3 | 0.52 | 35.0 | 3.48e-01 | 97.9% | 66.7% |
| 5v5nA02 | 1.10.510.10 | Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 | 0.51 | 44.0 | 2.91e-01 | 100.0% | 26.9% |
| 1owfA00 | 4.10.520.10 | Few Secondary Structures › Irregular › HU Protein; Chain A › IHF-like DNA-binding proteins | 0.51 | 34.0 | 2.71e-01 | 74.5% | 33.3% |
| 5lznA00 | 3.10.20.360 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › CKK domain | 0.50 | 31.0 | 2.43e-01 | 89.4% | 22.5% |
ECOD (20)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1874307 | 375.1.1.65 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Thio2_N | 0.72 | 39.0 | 4.31e-01 | 97.9% | 66.7% |
| 4618205 | 604.1.1.150 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › PF28954 | 0.67 | 37.0 | 2.69e-01 | 95.7% | 18.3% |
| 3278973 | 375.1.1.185 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Zn_ribbon_8 | 0.64 | 38.0 | 4.02e-01 | 95.7% | 65.0% |
| 4929843 | 4123.1.1.0 ↗ | few secondary structure elements › E7 C-terminal domain-like › E7 C-terminal domain-like › E7 C-terminal domain-like | 0.64 | 45.0 | 4.49e-01 | 100.0% | 74.0% |
| 3943305 | 375.6.1.0 ↗ | few secondary structure elements › Rubredoxin-like › FlhC-like › FlhC-like | 0.61 | 34.0 | 4.01e-01 | 95.7% | 83.3% |
| 3743813 | 11.16.1.1 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › N-terminal domain in A1 cistron-splicing factor AAR2 › N-terminal domain in A1 cistron-splicing factor AAR2 › AAR2_1st | 0.61 | 35.0 | 2.52e-01 | 74.5% | 17.1% |
| 4952531 | 375.1.2.1 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Desulforedoxin › Desulfoferrod_N | 0.60 | 35.0 | 3.72e-01 | 95.7% | 60.0% |
| 3216880 | 268.1.1.0 ↗ | a+b two layers › Sterol carrier protein-like › Sterol carrier protein, SCP-related › Sterol carrier protein, SCP-related | 0.58 | 41.0 | 3.17e-01 | 76.6% | 82.6% |
| 3961108 | 2004.1.1.155 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_3 | 0.58 | 45.0 | 3.27e-01 | 85.1% | 75.4% |
| 5048038 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.56 | 35.0 | 3.24e-01 | 97.9% | 50.0% |
| 4995783 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.55 | 37.0 | 3.90e-01 | 97.9% | 82.5% |
| 5000767 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.55 | 40.0 | 3.99e-01 | 97.9% | 76.0% |
| 2662362 | 2011.2.1.0 ↗ | a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Peptidyl-tRNA hydrolase-like › Peptidyl-tRNA hydrolase-like | 0.54 | 46.0 | 3.14e-01 | 100.0% | 31.0% |
| 3506749 | 633.21.1.23 ↗ | alpha bundles › Bromodomain-like › Uncharacterized protein PA2107 › Uncharacterized protein PA2107 › CD20 | 0.54 | 33.0 | 2.28e-01 | 83.0% | 17.0% |
| 4194816 | 2002.1.1.275 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Amidohydro_1, DHOase | 0.54 | 40.0 | 2.41e-01 | 85.1% | 28.4% |
| 3226366 | 206.1.1.20 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › PK_Tyr_Ser-Thr | 0.54 | 46.0 | 2.75e-01 | 100.0% | 45.0% |
| 5012389 | 2.1.1.364 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DUF2110 | 0.53 | 40.0 | 3.32e-01 | 91.5% | 68.0% |
| 5057901 | 375.10.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Zinc finger domain of DNA polymerase-alpha › Zinc finger domain of DNA polymerase-alpha | 0.52 | 39.0 | 3.86e-01 | 80.9% | 88.0% |
| 3996532 | 391.1.2.0 ↗ | few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › VWC domain-related | 0.52 | 39.0 | 4.14e-01 | 80.9% | 95.0% |
| 3627765 | 391.1.2.0 ↗ | few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › VWC domain-related | 0.51 | 39.0 | 3.48e-01 | 89.4% | 60.0% |