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MG592415.1__AUR83052.1__NVP1031O_070__00070
Bact-VirMG592415.1__AUR83052.1__NVP1031O_070__00070
Identity
- Accession:
- MG592415 ↗
- Kingdom:
- phage
Quality
90.6
mean pLDDT
Taxonomy
TaxID: 1881294
Cluster
View cluster (4 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 6-105
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF14216.13 best | DUF4326 | 40.1 | 6.20e-10 | 90.0% | 82.3% |
CATH (22)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3lwjA00 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.61 | 48.0 | 3.93e-01 | 85.0% | 59.6% |
| 3anpB00 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.61 | 47.0 | 3.87e-01 | 85.0% | 57.7% |
| 2fd5A02 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.60 | 49.0 | 4.52e-01 | 90.0% | 79.5% |
| 6jixA02 | 3.40.640.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aspartate Aminotransferase; domain 2 › Type I PLP-dependent aspartate aminotransferase-like (Major domain) | 0.59 | 48.0 | 3.53e-01 | 88.0% | 48.9% |
| 2nn4A00 | 1.10.287.760 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › YqgQ-like | 0.59 | 36.0 | 4.43e-01 | 80.0% | 98.4% |
| 4pmxA00 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.56 | 43.0 | 3.13e-01 | 83.0% | 42.2% |
| 1c9kB00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.56 | 46.0 | 3.87e-01 | 91.0% | 89.4% |
| 2mtqA00 | 1.20.58.130 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.55 | 37.0 | 4.18e-01 | 86.0% | 94.5% |
| 5d1rB00 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.55 | 45.0 | 3.56e-01 | 91.0% | 64.6% |
| 3lsjA02 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.55 | 44.0 | 3.84e-01 | 86.0% | 68.6% |
| 3obwA02 | 3.30.420.60 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › eRF1 domain 2 | 0.55 | 41.0 | 3.88e-01 | 78.0% | 71.2% |
| 3kwlA02 | 1.10.1060.20 | Mainly Alpha › Orthogonal Bundle › Fumarate Reductase Iron-sulfur Protein; Chain B, domain 2 › | 0.55 | 40.0 | 3.92e-01 | 97.0% | 69.9% |
| 2oerA00 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.55 | 41.0 | 3.48e-01 | 82.0% | 57.0% |
| 1i6zA00 | 1.20.58.120 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › BAG domain | 0.54 | 37.0 | 3.46e-01 | 72.0% | 76.3% |
| 3v9pB00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.54 | 42.0 | 3.41e-01 | 85.0% | 59.4% |
| 2ee4A01 | 1.10.555.10 | Mainly Alpha › Orthogonal Bundle › Phosphatidylinositol 3-kinase; Chain A › Rho GTPase activation protein | 0.54 | 42.0 | 3.47e-01 | 86.0% | 79.7% |
| 3t8vA05 | 1.25.50.10 | Mainly Alpha › Alpha Horseshoe › Zincin-like fold › Peptidase M1, alanyl aminopeptidase, C-terminal domain | 0.53 | 38.0 | 2.72e-01 | 81.0% | 22.4% |
| 5ailA00 | 3.40.220.10 | Alpha Beta › 3-Layer(aba) Sandwich › Leucine Aminopeptidase, subunit E; domain 1 › Leucine Aminopeptidase, subunit E, domain 1 | 0.53 | 43.0 | 3.57e-01 | 88.0% | 76.7% |
| 3smtA02 | 3.90.1420.10 | Alpha Beta › Alpha-Beta Complex › set domain protein methyltransferase, domain 2 › Rubisco LSMT, substrate-binding domain | 0.52 | 42.0 | 3.60e-01 | 88.0% | 95.1% |
| 6vudA01 | 1.10.132.20 | Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor | 0.52 | 36.0 | 3.54e-01 | 70.0% | 95.4% |
| 7xcnM01 | 1.10.1240.10 | Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › Methionine synthase domain | 0.52 | 30.0 | 3.30e-01 | 87.0% | 71.8% |
| 1zoyA03 | 1.20.58.100 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal domain | 0.50 | 39.0 | 3.77e-01 | 100.0% | 73.5% |
ECOD (8)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3996845 | 6166.1.1.0 ↗ | alpha bundles › N-terminal domain of Delta(14)-sterol reductase, MaSR1 › N-terminal domain of Delta(14)-sterol reductase, MaSR1 › N-terminal domain of Delta(14)-sterol reductase, MaSR1 | 0.63 | 51.0 | 4.63e-01 | 90.0% | 100.0% |
| 4565836 | 4146.1.1.1 ↗ | alpha bundles › YqgQ-like › YqgQ-like › YqgQ-like › YqgQ-like | 0.57 | 36.0 | 4.18e-01 | 72.0% | 90.0% |
| 3507914 | 2004.1.1.294 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ELP6 | 0.56 | 49.0 | 3.75e-01 | 98.0% | 57.9% |
| 4956162 | 4995.1.1.0 ↗ | alpha arrays › Methionine synthase domain-like › Methionine synthase domain-like › Methionine synthase domain-like | 0.53 | 36.0 | 4.04e-01 | 75.0% | 96.0% |
| 3278565 | 601.19.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › Apolipoprotein › Apolipoprotein | 0.52 | 43.0 | 3.35e-01 | 96.0% | 81.6% |
| 3938862 | 604.1.1.98 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › Spectrin_Anc-1 | 0.52 | 35.0 | 3.49e-01 | 71.0% | 85.5% |
| 4675322 | 101.8.1.2 ↗ | alpha arrays › HTH › An anticodon-binding domain of class I aminoacyl-tRNA synthetases › An anticodon-binding domain of class I aminoacyl-tRNA synthetases › Anticodon_2 | 0.51 | 38.0 | 3.28e-01 | 80.0% | 50.9% |
| 3467828 | 109.4.1.629 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › DUF629 | 0.50 | 37.0 | 2.70e-01 | 79.0% | 81.6% |
D2
high
residues 115-274
Domain cluster:
rep: MW749006.1__QXN70452.1__AGENTSMITH_46__00046__D103-236
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF08719.18 best | NADAR | 72.3 | 7.80e-20 | 98.8% | 96.3% |
CATH (2)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2b3wA00 | 1.10.357.40 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › YbiA-like | 0.89 | 77.0 | 7.58e-01 | 100.0% | 85.1% |
| 8bauA01 | 1.10.357.40 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › YbiA-like | 0.81 | 77.0 | 7.33e-01 | 98.8% | 96.7% |
ECOD (31)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3264987 | 4308.1.1.1 ↗ | a+b complex topology › YbiA-like › YbiA-like › YbiA-like › NADAR | 0.92 | 80.0 | 8.47e-01 | 100.0% | 99.3% |
| 3616731 | 4308.1.1.1 ↗ | a+b complex topology › YbiA-like › YbiA-like › YbiA-like › NADAR | 0.91 | 74.0 | 7.45e-01 | 100.0% | 84.2% |
| 3797441 | 4308.1.1.0 ↗ | a+b complex topology › YbiA-like › YbiA-like › YbiA-like | 0.90 | 73.0 | 7.55e-01 | 100.0% | 86.9% |
| 3600506 | 4308.1.1.0 ↗ | a+b complex topology › YbiA-like › YbiA-like › YbiA-like | 0.89 | 79.0 | 8.22e-01 | 100.0% | 97.3% |
| 7671 | 4308.1.1.1 ↗ | a+b complex topology › YbiA-like › YbiA-like › YbiA-like › NADAR | 0.89 | 77.0 | 7.74e-01 | 100.0% | 89.4% |
| 3705063 | 4308.1.1.1 ↗ | a+b complex topology › YbiA-like › YbiA-like › YbiA-like › NADAR | 0.89 | 78.0 | 8.22e-01 | 99.4% | 100.0% |
| 3432841 | 4308.1.1.1 ↗ | a+b complex topology › YbiA-like › YbiA-like › YbiA-like › NADAR | 0.88 | 84.0 | 8.48e-01 | 100.0% | 98.8% |
| 3281506 | 4308.1.1.1 ↗ | a+b complex topology › YbiA-like › YbiA-like › YbiA-like › NADAR | 0.86 | 75.0 | 7.82e-01 | 100.0% | 96.0% |
| 3218293 | 4308.1.1.1 ↗ | a+b complex topology › YbiA-like › YbiA-like › YbiA-like › NADAR | 0.85 | 72.0 | 6.42e-01 | 100.0% | 65.7% |
| 3514172 | 4308.1.1.1 ↗ | a+b complex topology › YbiA-like › YbiA-like › YbiA-like › NADAR | 0.82 | 76.0 | 7.52e-01 | 98.8% | 93.3% |
| 3923757 | 4308.1.1.1 ↗ | a+b complex topology › YbiA-like › YbiA-like › YbiA-like › NADAR | 0.82 | 73.0 | 7.14e-01 | 99.4% | 87.1% |
| 3998019 | 4308.1.1.1 ↗ | a+b complex topology › YbiA-like › YbiA-like › YbiA-like › NADAR | 0.82 | 76.0 | 7.24e-01 | 100.0% | 85.6% |
| 3789927 | 4308.1.1.1 ↗ | a+b complex topology › YbiA-like › YbiA-like › YbiA-like › NADAR | 0.82 | 79.0 | 7.54e-01 | 100.0% | 90.6% |
| 3230342 | 4308.1.1.1 ↗ | a+b complex topology › YbiA-like › YbiA-like › YbiA-like › NADAR | 0.81 | 78.0 | 7.02e-01 | 100.0% | 81.0% |
| 3279758 | 4308.1.1.1 ↗ | a+b complex topology › YbiA-like › YbiA-like › YbiA-like › NADAR | 0.81 | 68.0 | 7.09e-01 | 98.1% | 93.3% |
| 3180309 | 4308.1.1.1 ↗ | a+b complex topology › YbiA-like › YbiA-like › YbiA-like › NADAR | 0.81 | 78.0 | 7.10e-01 | 100.0% | 89.0% |
| 3230388 | 4308.1.1.1 ↗ | a+b complex topology › YbiA-like › YbiA-like › YbiA-like › NADAR | 0.81 | 78.0 | 7.19e-01 | 100.0% | 84.1% |
| 3515177 | 4308.1.1.0 ↗ | a+b complex topology › YbiA-like › YbiA-like › YbiA-like | 0.80 | 77.0 | 7.26e-01 | 99.4% | 100.0% |
| 3212620 | 4308.1.1.1 ↗ | a+b complex topology › YbiA-like › YbiA-like › YbiA-like › NADAR | 0.80 | 77.0 | 7.11e-01 | 100.0% | 93.8% |
| 3972372 | 4308.1.1.0 ↗ | a+b complex topology › YbiA-like › YbiA-like › YbiA-like | 0.79 | 76.0 | 7.29e-01 | 100.0% | 91.1% |
| 4028386 | 4308.1.1.0 ↗ | a+b complex topology › YbiA-like › YbiA-like › YbiA-like | 0.79 | 74.0 | 7.17e-01 | 98.1% | 100.0% |
| 3800544 | 4308.1.1.0 ↗ | a+b complex topology › YbiA-like › YbiA-like › YbiA-like | 0.79 | 75.0 | 6.79e-01 | 100.0% | 90.7% |
| 3518372 | 4308.1.1.0 ↗ | a+b complex topology › YbiA-like › YbiA-like › YbiA-like | 0.78 | 74.0 | 7.00e-01 | 99.4% | 99.5% |
| 3518191 | 4308.1.1.0 ↗ | a+b complex topology › YbiA-like › YbiA-like › YbiA-like | 0.78 | 61.0 | 6.68e-01 | 100.0% | 97.0% |
| 3933560 | 4308.1.1.0 ↗ | a+b complex topology › YbiA-like › YbiA-like › YbiA-like | 0.77 | 73.0 | 6.80e-01 | 100.0% | 93.8% |
| 3930688 | 4308.1.1.1 ↗ | a+b complex topology › YbiA-like › YbiA-like › YbiA-like › NADAR | 0.76 | 72.0 | 6.69e-01 | 100.0% | 93.3% |
| 3620605 | 4308.1.1.1 ↗ | a+b complex topology › YbiA-like › YbiA-like › YbiA-like › NADAR | 0.76 | 73.0 | 7.08e-01 | 100.0% | 93.1% |
| 3995458 | 4308.1.1.0 ↗ | a+b complex topology › YbiA-like › YbiA-like › YbiA-like | 0.76 | 62.0 | 6.70e-01 | 86.9% | 100.0% |
| 3515138 | 4308.1.1.0 ↗ | a+b complex topology › YbiA-like › YbiA-like › YbiA-like | 0.75 | 70.0 | 6.56e-01 | 99.4% | 98.9% |
| 3514155 | 4308.1.1.0 ↗ | a+b complex topology › YbiA-like › YbiA-like › YbiA-like | 0.74 | 71.0 | 6.85e-01 | 100.0% | 98.3% |
| 3999501 | 4308.1.1.1 ↗ | a+b complex topology › YbiA-like › YbiA-like › YbiA-like › NADAR | 0.74 | 70.0 | 6.98e-01 | 98.8% | 96.9% |