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MG592415.1__AUR83090.1__NVP1031O_108__00108

Bact-Vir

MG592415.1__AUR83090.1__NVP1031O_108__00108

Identity

Accession:
MG592415 ↗
Kingdom:
phage

Quality

68.4 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Vibrio_phage_1.031.O._10N.261.46.F8

TaxID: 1881294

Cluster

View cluster (11 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 26-88
PDB
Domain cluster: representative
CATH (47)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3c12A01 2.30.30.910 Mainly Beta › Roll › SH3 type barrels. › 0.83 52.0 5.69e-01 76.2% 78.4%
5kcoA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.75 53.0 5.47e-01 73.0% 79.7%
2f5kA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.75 53.0 5.85e-01 74.6% 100.0%
6my0A02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.74 56.0 5.63e-01 81.0% 84.6%
5zg8A01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.73 55.0 4.65e-01 81.0% 85.3%
2l3rA02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.72 53.0 5.05e-01 77.8% 83.6%
3pieC09 2.30.30.750 Mainly Beta › Roll › SH3 type barrels. › 0.72 54.0 4.58e-01 79.4% 68.7%
3kf6A00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.72 53.0 4.05e-01 77.8% 58.8%
2efiA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.71 52.0 4.44e-01 77.8% 52.0%
1khiA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.70 50.0 4.77e-01 76.2% 77.3%
3cpfA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.69 50.0 5.02e-01 77.8% 78.5%
7xpkA01 2.30.30.490 Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain 0.69 62.0 4.67e-01 98.4% 71.7%
4gnxB00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.68 49.0 3.93e-01 76.2% 58.2%
1icwB00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.67 49.0 4.91e-01 79.4% 87.9%
4b08A01 2.40.50.730 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.67 52.0 4.80e-01 84.1% 98.8%
2lccA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.65 55.0 5.16e-01 90.5% 85.5%
1sp4B00 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.65 58.0 4.01e-01 100.0% 41.0%
6bogA02 2.30.30.930 Mainly Beta › Roll › SH3 type barrels. › 0.65 51.0 5.21e-01 87.3% 93.3%
4bwgD00 2.40.50.110 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.64 45.0 3.92e-01 74.6% 55.7%
3rn5A02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.63 46.0 4.10e-01 77.8% 100.0%
2it1A03 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.63 45.0 4.62e-01 84.1% 77.0%
2pi2D00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.63 47.0 3.78e-01 79.4% 78.0%
2d9uA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.63 44.0 4.24e-01 74.6% 67.6%
5b4wA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.61 47.0 2.81e-01 82.5% 92.2%
3c96A01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.61 47.0 3.46e-01 82.5% 47.0%
1gv4A02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.61 43.0 3.17e-01 74.6% 78.9%
1noyA01 3.30.342.10 Alpha Beta › 2-Layer Sandwich › DNA Polymerase; Chain A, domain 1 › DNA Polymerase, chain B, domain 1 0.61 43.0 3.39e-01 74.6% 85.1%
2xp1A02 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.60 43.0 3.95e-01 74.6% 92.5%
3d31A03 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.60 44.0 4.27e-01 77.8% 77.5%
6aonA02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.60 43.0 3.46e-01 74.6% 98.4%
4ympA00 2.60.40.1850 Mainly Beta › Sandwich › Immunoglobulin-like › 0.60 44.0 3.73e-01 81.0% 94.6%
1reoA02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.59 45.0 3.47e-01 82.5% 56.8%
2cduA02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.59 44.0 3.32e-01 79.4% 82.8%
2wfwB02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.58 45.0 4.42e-01 82.5% 98.5%
7bwcA01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.58 47.0 2.98e-01 88.9% 82.4%
3awiA02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.57 43.0 2.89e-01 82.5% 54.4%
2r0cA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.57 44.0 2.92e-01 82.5% 49.8%
3nvnA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.57 45.0 2.75e-01 84.1% 89.8%
4huzA02 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.56 38.0 2.95e-01 71.4% 40.4%
3d1cA02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.56 41.0 3.43e-01 79.4% 97.4%
3ic9A03 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.55 40.0 3.30e-01 79.4% 73.8%
4bjzA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.55 43.0 3.17e-01 84.1% 42.9%
1mtpA02 2.30.39.10 Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 0.54 37.0 3.28e-01 71.4% 97.8%
4a9wA00 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.53 45.0 2.93e-01 100.0% 75.2%
3nixB00 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.51 43.0 2.68e-01 95.2% 64.5%
8dc1A01 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.50 35.0 2.36e-01 73.0% 19.0%
4qdiA02 3.40.1190.10 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Mur-like, catalytic domain 0.50 36.0 2.51e-01 76.2% 30.1%
ECOD (68)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3230533 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.84 51.0 5.88e-01 74.6% 86.7%
5017637 4.1.1.458 ↗ beta barrels › SH3 › SH3 › SH3 › DUF2098 0.83 54.0 5.74e-01 76.2% 76.4%
4161673 4.1.1.105 ↗ beta barrels › SH3 › SH3 › SH3 › DUF5604 0.77 57.0 5.08e-01 77.8% 58.8%
3917372 4.1.1.101 ↗ beta barrels › SH3 › SH3 › SH3 › Tudor_2 0.75 56.0 5.22e-01 77.8% 66.7%
4936051 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.74 56.0 5.92e-01 81.0% 96.4%
4287587 4.6.1.6 ↗ beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain › PRC_RimM 0.74 56.0 5.44e-01 81.0% 74.3%
3246514 219.1.1.4 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C2 0.73 58.0 3.93e-01 87.3% 45.7%
5043697 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.73 58.0 5.74e-01 84.1% 83.1%
4481026 4.1.1.407 ↗ beta barrels › SH3 › SH3 › SH3 › PF29661 0.72 54.0 5.54e-01 79.4% 86.7%
3511375 4.1.1.349 ↗ beta barrels › SH3 › SH3 › SH3 › ROF 0.72 54.0 4.87e-01 79.4% 61.2%
3174977 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.72 59.0 5.10e-01 88.9% 85.3%
3277860 4.1.1.368 ↗ beta barrels › SH3 › SH3 › SH3 › DUF3097_N 0.71 51.0 5.11e-01 76.2% 73.8%
5029056 2.1.1.15 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.71 49.0 3.99e-01 71.4% 73.0%
5011086 101.1.2.70 ↗ alpha arrays › HTH › HTH › winged helix domain › PqqD 0.71 46.0 4.08e-01 73.0% 46.7%
3790904 4.8.1.2 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Chromo_shadow 0.71 49.0 5.09e-01 73.0% 78.3%
3687350 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.71 50.0 5.32e-01 74.6% 90.9%
3497365 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.70 50.0 5.29e-01 74.6% 92.7%
3940607 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.70 50.0 5.13e-01 74.6% 86.4%
4241924 4.1.1.93 ↗ beta barrels › SH3 › SH3 › SH3 › 40S_S4_C 0.69 56.0 5.00e-01 90.5% 62.2%
4947612 4.11.1.0 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase 0.69 51.0 3.94e-01 79.4% 47.1%
4528717 4.6.1.6 ↗ beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain › PRC_RimM 0.69 52.0 5.05e-01 81.0% 76.8%
4124092 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.68 50.0 4.91e-01 79.4% 71.4%
4937389 4.11.1.0 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase 0.68 50.0 4.20e-01 79.4% 49.1%
4265943 219.1.1.4 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C2 0.68 54.0 3.50e-01 87.3% 21.0%
3933293 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.67 48.0 4.98e-01 74.6% 84.5%
4284709 4.1.1.111 ↗ beta barrels › SH3 › SH3 › SH3 › Tudor_RapA 0.67 49.0 5.23e-01 79.4% 90.9%
3601074 219.1.1.4 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C2 0.67 56.0 3.57e-01 93.7% 31.2%
4446834 2.4.1.2 ↗ beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 0.66 46.0 3.78e-01 73.0% 42.5%
4616207 4.1.1.448 ↗ beta barrels › SH3 › SH3 › SH3 › DUF5372 0.66 45.0 4.89e-01 71.4% 96.0%
5032809 4.11.1.0 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase 0.66 51.0 4.03e-01 84.1% 42.3%
5032454 4.11.1.0 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase 0.65 50.0 3.98e-01 84.1% 43.8%
4951333 2.4.1.1 ↗ beta barrels › OB-fold › MOP-like › MOP-like › TOBE 0.65 46.0 3.71e-01 74.6% 48.3%
3942848 2003.1.2.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain 0.64 47.0 3.26e-01 77.8% 98.6%
3283424 2.4.1.1 ↗ beta barrels › OB-fold › MOP-like › MOP-like › TOBE 0.64 46.0 3.78e-01 74.6% 50.9%
4951338 2.4.1.1 ↗ beta barrels › OB-fold › MOP-like › MOP-like › TOBE 0.64 45.0 3.60e-01 73.0% 48.3%
3981045 219.1.1.0 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.64 48.0 3.66e-01 82.5% 48.4%
4927967 2003.1.2.297 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox_dim 0.64 46.0 2.82e-01 76.2% 23.4%
4951344 2.4.1.2 ↗ beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 0.64 48.0 3.88e-01 79.4% 47.8%
4951352 2.4.1.2 ↗ beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 0.63 47.0 3.74e-01 77.8% 44.2%
4974246 2.4.1.2 ↗ beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 0.63 45.0 3.60e-01 73.0% 46.7%
4949063 2.4.1.1 ↗ beta barrels › OB-fold › MOP-like › MOP-like › TOBE 0.63 46.0 3.78e-01 77.8% 47.4%
3733247 2003.1.2.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain 0.62 48.0 3.20e-01 84.1% 52.5%
119159 2.4.1.1 ↗ beta barrels › OB-fold › MOP-like › MOP-like › TOBE 0.62 43.0 4.36e-01 73.0% 71.9%
4936173 2.4.1.1 ↗ beta barrels › OB-fold › MOP-like › MOP-like › TOBE 0.62 45.0 3.58e-01 77.8% 43.2%
3587958 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.62 44.0 4.01e-01 77.8% 73.3%
3740221 4.11.1.0 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase 0.61 47.0 3.56e-01 84.1% 40.6%
3516722 219.1.1.1 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C1 0.61 55.0 3.17e-01 100.0% 13.2%
4998437 2003.1.3.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Nucleotide-binding domain 0.60 47.0 3.32e-01 84.1% 58.5%
3659855 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.59 44.0 4.07e-01 79.4% 98.8%
5004623 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.59 45.0 3.94e-01 82.5% 78.9%
3813307 5.1.3.67 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_1 0.59 46.0 2.91e-01 87.3% 93.4%
4240399 2003.1.3.15 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Nucleotide-binding domain › Pyr_redox_2, NAD_binding_8 0.58 47.0 3.27e-01 87.3% 59.5%
4032882 220.1.1.76 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › bPH_2 0.58 49.0 4.42e-01 100.0% 89.2%
3660755 4.8.1.21 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › PTM_DIR17_Tudor 0.57 46.0 4.41e-01 92.1% 88.0%
3289908 220.1.1.76 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › bPH_2 0.57 44.0 3.48e-01 82.5% 86.2%
1176788 2003.1.2.16 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_3,NAD_binding_8 0.57 44.0 3.19e-01 84.1% 85.9%
4984579 2004.1.1.42 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › T2SSE 0.57 42.0 2.54e-01 81.0% 42.1%
3521829 4.1.1.284 ↗ beta barrels › SH3 › SH3 › SH3 › SBNO 0.57 44.0 3.76e-01 90.5% 52.2%
4936865 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.56 44.0 3.55e-01 85.7% 76.8%
3730229 4.1.1.102 ↗ beta barrels › SH3 › SH3 › SH3 › Tudor_3 0.56 47.0 4.50e-01 100.0% 84.0%
4968394 220.1.1.76 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › bPH_2 0.55 45.0 3.92e-01 96.8% 89.5%
4041551 220.1.1.76 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › bPH_2 0.55 41.0 3.35e-01 81.0% 77.5%
3958403 2003.1.3.28 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Nucleotide-binding domain › FAD_binding_3 0.54 40.0 3.05e-01 79.4% 82.7%
4792845 2003.1.2.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain 0.53 39.0 2.78e-01 79.4% 73.5%
3924724 331.23.1.0 ↗ a+b two layers › TBP-like › Integrator IntS9/IntS11 C-terminal domain › Integrator IntS9/IntS11 C-terminal domain 0.52 37.0 3.44e-01 74.6% 71.2%
4505483 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.52 38.0 2.35e-01 82.5% 75.9%
3735038 219.1.1.3 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.51 37.0 2.42e-01 81.0% 20.3%
4683204 101.35.1.5 ↗ alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › RecX_HTH1 0.50 36.0 3.22e-01 82.5% 54.3%