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MG592415.1__AUR83093.1__NVP1031O_111__00111

Bact-Vir

MG592415.1__AUR83093.1__NVP1031O_111__00111

Identity

Accession:
MG592415 ↗
Kingdom:
phage

Quality

71.1 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Vibrio_phage_1.031.O._10N.261.46.F8

TaxID: 1881294

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-79
PDB
Domain cluster: representative
CATH (44)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1m3qA01 3.30.310.40 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › 0.69 45.0 4.28e-01 88.2% 57.3%
1cqaA00 3.30.450.30 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic 0.64 54.0 4.59e-01 94.7% 56.9%
4qrlA00 2.40.128.280 Mainly Beta › Beta Barrel › Lipocalin › 0.64 48.0 4.18e-01 77.6% 92.7%
3imoC00 3.30.920.70 Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › 0.64 44.0 3.93e-01 71.1% 77.6%
1gpqB00 3.40.1420.10 Alpha Beta › 3-Layer(aba) Sandwich › Inhibitor of vertebrate lysozyme, Ivy › Inhibitor of vertebrate lysozyme 0.62 42.0 3.55e-01 71.1% 53.9%
3dcxA00 2.30.29.50 Mainly Beta › Roll › PH-domain like › Bacterial Pleckstrin homology domain 0.62 48.0 4.16e-01 84.2% 82.9%
4on1A01 2.40.128.470 Mainly Beta › Beta Barrel › Lipocalin › 0.62 49.0 4.07e-01 88.2% 89.2%
1yprA00 3.30.450.30 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic 0.61 51.0 4.34e-01 94.7% 56.0%
4ebrA00 3.30.1460.50 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.60 46.0 3.71e-01 84.2% 83.4%
6j9eJ00 3.30.160.560 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.60 39.0 4.20e-01 94.7% 78.8%
4bf3A00 2.30.31.50 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Borrelia outer surface protein E/F 0.59 43.0 3.62e-01 78.9% 45.9%
2vt8A00 3.40.1000.30 Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › 0.58 47.0 3.86e-01 89.5% 60.1%
3q6aB00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.58 44.0 3.73e-01 84.2% 65.7%
3lp9A00 2.110.10.10 Mainly Beta › 4 Propeller › Hemopexin › Hemopexin-like domain 0.58 48.0 3.45e-01 92.1% 61.2%
1p5dX04 3.30.310.50 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Alpha-D-phosphohexomutase, C-terminal domain 0.58 38.0 3.62e-01 85.5% 55.9%
2jkbA02 2.120.10.10 Mainly Beta › 6 Propeller › Neuraminidase › 0.57 46.0 2.96e-01 86.8% 78.4%
2j7qA00 3.90.70.120 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › 0.57 49.0 3.56e-01 100.0% 63.2%
2ci9B00 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.57 44.0 4.00e-01 100.0% 63.0%
5upiA01 2.70.98.30 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Golgi alpha-mannosidase II; domain 4 0.56 42.0 3.13e-01 78.9% 58.0%
2z3zA01 2.140.10.30 Mainly Beta › 8 Propeller › Methanol Dehydrogenase; Chain A › Dipeptidylpeptidase IV, N-terminal domain 0.56 47.0 2.98e-01 93.4% 48.1%
4ntqA00 3.10.380.20 Alpha Beta › Roll › Ribonuclease domain of colicin e3 (Residues 456-551) › Novel toxin 21 (CdiA), C-terminal domain 0.55 40.0 4.06e-01 77.6% 77.6%
1lfoA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.55 41.0 3.47e-01 78.9% 81.1%
1cruA00 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.55 43.0 2.79e-01 92.1% 76.3%
2z0fA04 3.30.310.50 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Alpha-D-phosphohexomutase, C-terminal domain 0.54 42.0 3.89e-01 85.5% 69.6%
2it9A00 2.30.31.10 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A 0.54 42.0 3.68e-01 85.5% 63.3%
4qq1C03 2.40.128.240 Mainly Beta › Beta Barrel › Lipocalin › 0.54 37.0 3.59e-01 72.4% 71.6%
4ba0A01 2.60.40.1760 Mainly Beta › Sandwich › Immunoglobulin-like › glycosyl hydrolase (family 31) 0.53 40.0 3.01e-01 81.6% 67.3%
2c9wA01 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.53 40.0 3.56e-01 81.6% 74.3%
1ri6A00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.53 44.0 2.90e-01 92.1% 49.5%
6i8xA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.53 39.0 3.15e-01 78.9% 57.7%
5f7uA02 2.60.40.1760 Mainly Beta › Sandwich › Immunoglobulin-like › glycosyl hydrolase (family 31) 0.52 43.0 3.14e-01 93.4% 96.0%
3cpfA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.52 35.0 3.76e-01 78.9% 83.1%
8ornD01 2.50.20.10 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX 0.52 40.0 3.15e-01 86.8% 82.4%
5w7zA01 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.51 38.0 3.43e-01 81.6% 61.9%
2f7lA04 3.30.310.50 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Alpha-D-phosphohexomutase, C-terminal domain 0.51 37.0 3.58e-01 85.5% 68.2%
7xr9E01 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.51 40.0 3.05e-01 86.8% 81.2%
2wjsA02 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.51 41.0 3.13e-01 88.2% 80.9%
2bf1A00 2.170.40.20 Mainly Beta › Beta Complex › HIV Envelope Protein Gp120; Chain G › Human immunodeficiency virus 1, Gp160, envelope glycoprotein 0.51 37.0 2.55e-01 78.9% 73.4%
4i0wD02 2.60.120.1290 Mainly Beta › Sandwich › Jelly Rolls › 0.51 36.0 3.03e-01 88.2% 43.8%
6n8pA01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.51 43.0 2.84e-01 98.7% 47.0%
3t0pA01 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.51 41.0 3.22e-01 90.8% 59.9%
2v73A00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.51 40.0 3.07e-01 86.8% 80.3%
1evjC02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.51 39.0 3.03e-01 84.2% 78.5%
4gniA04 3.90.640.10 Alpha Beta › Alpha-Beta Complex › Actin; Chain A, domain 4 › ATPase, substrate binding domain, subdomain 4 0.51 38.0 3.72e-01 82.9% 95.3%
ECOD (47)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5003276 331.1.1.5 ↗ a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like › OGG_N 0.72 44.0 4.72e-01 82.9% 72.3%
5051613 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.71 41.0 3.52e-01 96.1% 36.4%
5053495 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.70 43.0 3.32e-01 98.7% 29.4%
3257727 216.1.1.0 ↗ a+b two layers › UBC-like › UBC-like › UBC-like 0.68 48.0 4.02e-01 92.1% 43.8%
5033617 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.67 44.0 3.68e-01 98.7% 40.0%
3930831 5.1.3.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.65 52.0 3.44e-01 85.5% 65.1%
3604153 331.2.1.1 ↗ a+b two layers › TBP-like › Phosphoglucomutase, C-terminal domain › Phosphoglucomutase, C-terminal domain › PGM_PMM_IV 0.64 41.0 4.11e-01 85.5% 62.5%
3909523 6129.1.1.0 ↗ beta barrels › Repulsive guidance molecule (RGM) family › Repulsive guidance molecule (RGM) family › Repulsive guidance molecule (RGM) family 0.64 51.0 3.68e-01 85.5% 33.2%
3215166 3180.1.1.0 ↗ a+b two layers › LEE-encoded effector EspG N-terminal domain-related › LEE-encoded effector EspG N-terminal domain-related › LEE-encoded effector EspG N-terminal domain-related 0.62 44.0 4.12e-01 85.5% 60.0%
4247937 295.1.1.0 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.62 49.0 4.30e-01 85.5% 63.6%
3784883 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.59 48.0 3.17e-01 88.2% 40.0%
3877094 5.1.3.4 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › WD40 0.59 48.0 3.14e-01 88.2% 57.9%
5011728 4210.1.1.0 ↗ a+b two layers › WGR domain › WGR domain › WGR domain 0.59 43.0 4.07e-01 78.9% 98.9%
3647550 331.2.1.0 ↗ a+b two layers › TBP-like › Phosphoglucomutase, C-terminal domain › Phosphoglucomutase, C-terminal domain 0.58 39.0 3.81e-01 82.9% 62.4%
3495361 5.1.4.402 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › PF30552 0.58 46.0 2.94e-01 88.2% 56.2%
3572782 5.1.4.147 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › RMC1_N 0.58 46.0 2.99e-01 86.8% 43.8%
5044594 809.2.1.0 ↗ a+b two layers › BLIP-like › BT0923-like › BT0923-like 0.58 50.0 4.72e-01 94.7% 90.0%
3779783 5.1.4.325 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, PF30552 0.58 46.0 2.95e-01 88.2% 61.3%
3465186 5.1.8.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › putative conserved lipoprotein NT01CX_1156 0.57 46.0 3.89e-01 88.2% 90.0%
3733356 298.1.1.25 ↗ a+b two layers › FwdE/GAPDH domain-like › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › ox_reductase_C 0.57 46.0 3.57e-01 88.2% 52.1%
3821429 241.15.1.0 ↗ a+b two layers › Type III secretory system chaperone-like › FP (Fbxo7/PI31) dimerization domain › FP (Fbxo7/PI31) dimerization domain 0.57 44.0 3.52e-01 85.5% 62.5%
3490544 5.1.4.147 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › RMC1_N 0.57 45.0 2.90e-01 86.8% 43.0%
3483534 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.56 46.0 3.02e-01 89.5% 58.5%
3199241 2008.1.1.144 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PF27653 0.56 45.0 3.45e-01 100.0% 37.2%
1687688 5.1.3.134 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › BNR, BNR_2 0.56 44.0 2.77e-01 86.8% 76.7%
3220069 5.1.4.147 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › RMC1_N 0.56 49.0 3.13e-01 97.4% 38.9%
3563385 5.1.5.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed 0.56 48.0 3.05e-01 94.7% 59.5%
1184367 331.2.1.1 ↗ a+b two layers › TBP-like › Phosphoglucomutase, C-terminal domain › Phosphoglucomutase, C-terminal domain › PGM_PMM_IV 0.56 38.0 3.63e-01 86.8% 59.3%
3569201 5.1.5.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed 0.56 43.0 2.79e-01 85.5% 45.3%
3251867 227.1.1.11 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › Hus1 0.55 41.0 3.46e-01 78.9% 90.0%
3737140 5.1.4.6 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40,ANAPC4_WD40 0.55 45.0 2.91e-01 88.2% 26.7%
4945471 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.55 43.0 4.63e-01 84.2% 100.0%
3435335 5.1.3.6 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Kelch_1 0.54 42.0 2.86e-01 88.2% 64.8%
3583317 10.1.1.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.54 47.0 3.59e-01 93.4% 90.3%
3993494 5.1.5.42 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › RMC1_N 0.54 44.0 3.00e-01 89.5% 57.2%
3199325 241.1.1.11 ↗ a+b two layers › Type III secretory system chaperone-like › Type III secretory system chaperone › Type III secretory system chaperone › Med14 0.54 40.0 3.11e-01 81.6% 81.7%
3932473 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.53 46.0 2.95e-01 97.4% 40.8%
None — 0.53 38.0 2.91e-01 77.6% 58.9%
3343255 5.1.4.37 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Nup160 0.52 45.0 2.75e-01 96.1% 45.5%
3925092 5.1.11.8 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 9-bladed › RMC1_N 0.52 44.0 2.86e-01 97.4% 55.4%
3256681 77.3.1.0 ↗ beta meanders › open-sided beta-meander › CPAP G-box domain › CPAP G-box domain 0.52 36.0 2.32e-01 77.6% 15.0%
5048170 331.10.2.0 ↗ a+b two layers › TBP-like › S-adenosylmethionine decarboxylase-related › Bacterial S-adenosylmethionine decarboxylase 0.52 38.0 3.82e-01 84.2% 75.0%
3665559 5.3.1.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-Prism II › beta-Prism II 0.52 40.0 3.31e-01 85.5% 94.5%
5035742 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.51 36.0 3.97e-01 80.3% 95.0%
4255330 331.2.1.1 ↗ a+b two layers › TBP-like › Phosphoglucomutase, C-terminal domain › Phosphoglucomutase, C-terminal domain › PGM_PMM_IV 0.51 37.0 3.53e-01 85.5% 66.3%
4025728 227.1.1.0 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp 0.51 39.0 3.44e-01 82.9% 93.0%
4963350 220.1.1.323 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › DUF7115 0.50 44.0 4.05e-01 97.4% 85.0%