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MG592415.1__AUR83138.1__NVP1031O_156__00156

Bact-Vir

MG592415.1__AUR83138.1__NVP1031O_156__00156

Identity

Accession:
MG592415 ↗
Kingdom:
phage

Quality

80.5 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 13-28_91-113_137-156
PDB
Domain cluster: representative
CATH (34)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4ao8A00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.64 44.0 2.96e-01 72.9% 41.5%
1v0fA02 2.120.10.10 Mainly Beta › 6 Propeller › Neuraminidase › 0.63 39.0 2.38e-01 72.9% 10.0%
3rtyB01 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.63 56.0 4.56e-01 100.0% 96.3%
2bolA03 2.60.40.790 Mainly Beta › Sandwich › Immunoglobulin-like › 0.63 40.0 3.40e-01 72.9% 40.9%
4aeeA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.62 43.0 3.62e-01 72.9% 57.7%
1kt8A01 3.30.470.10 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › Aminotransferase class 4, branched-chain amino acid transferase, N-terminal domain 0.62 54.0 3.84e-01 100.0% 74.5%
4e6nB00 3.30.1610.20 Alpha Beta › 2-Layer Sandwich › c-terminal autoproteolytic domain of nucleoporin nup98 › Hen1, N-terminal domain 0.59 51.0 3.45e-01 100.0% 26.6%
1v8cA02 3.30.1370.80 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › Molybdopterin cofactor biosynthesis MoaD-related, C-terminal domain 0.59 53.0 4.77e-01 100.0% 77.5%
4uf7B00 2.120.10.10 Mainly Beta › 6 Propeller › Neuraminidase › 0.58 51.0 3.06e-01 100.0% 94.9%
3nqkA02 2.40.128.440 Mainly Beta › Beta Barrel › Lipocalin › Uncharacterised protein PF14274, DUF4361 0.58 49.0 3.70e-01 100.0% 90.0%
1ju2A02 3.30.410.40 Alpha Beta › 2-Layer Sandwich › Cholesterol Oxidase; domain 2 › 0.58 48.0 3.52e-01 100.0% 35.9%
3buuB00 2.50.20.10 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX 0.58 51.0 3.47e-01 100.0% 83.2%
3lidA03 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.57 50.0 4.32e-01 100.0% 84.4%
1p1hB01 3.30.2360.10 Alpha Beta › 2-Layer Sandwich › Glyceraldehyde-3-phosphate dehydrogenase-like fold › Glyceraldehyde-3-phosphate dehydrogenase-like domain 0.57 40.0 2.79e-01 72.9% 26.7%
4feiA00 2.60.40.790 Mainly Beta › Sandwich › Immunoglobulin-like › 0.57 39.0 3.29e-01 72.9% 84.3%
1oygA01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.56 46.0 2.81e-01 94.9% 76.0%
4hudA01 3.30.2000.40 Alpha Beta › 2-Layer Sandwich › STM4215-like › Myoviridae tail sheath stabiliser 0.56 49.0 3.36e-01 98.3% 38.6%
1u4cB00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.56 48.0 3.05e-01 100.0% 98.8%
4dqnA01 3.30.470.10 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › Aminotransferase class 4, branched-chain amino acid transferase, N-terminal domain 0.56 46.0 3.54e-01 100.0% 87.3%
3n91A02 2.40.128.420 Mainly Beta › Beta Barrel › Lipocalin › 0.55 45.0 3.57e-01 96.6% 94.9%
3w42A00 3.60.40.10 Alpha Beta › 4-Layer Sandwich › Phosphatase 2c; domain 1 › PPM-type phosphatase domain 0.55 40.0 2.83e-01 79.7% 87.4%
3njcA00 3.30.1380.20 Alpha Beta › 2-Layer Sandwich › Muramoyl-pentapeptide Carboxypeptidase; domain 2 › Trafficking protein particle complex subunit 3 0.54 49.0 3.60e-01 100.0% 42.5%
3ramA02 3.30.70.360 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.54 47.0 3.79e-01 100.0% 63.6%
2jbvA04 3.30.410.40 Alpha Beta › 2-Layer Sandwich › Cholesterol Oxidase; domain 2 › 0.54 46.0 3.38e-01 100.0% 42.0%
3w9iA06 3.30.70.1430 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Multidrug efflux transporter AcrB pore domain 0.54 47.0 3.97e-01 100.0% 64.7%
3rpcA00 3.60.15.10 Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like 0.53 46.0 3.02e-01 100.0% 54.2%
3bn7A00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.53 45.0 3.83e-01 98.3% 63.7%
6iw2A01 2.60.98.10 Mainly Beta › Sandwich › Tick-borne Encephalitis virus Glycoprotein; domain 1 › Tick-borne Encephalitis virus Glycoprotein, domain 1 0.52 45.0 3.53e-01 100.0% 85.7%
6wilA01 2.40.160.50 Mainly Beta › Beta Barrel › Porin › membrane protein fhac: a member of the omp85/tpsb transporter family 0.52 42.0 2.73e-01 100.0% 90.3%
4fmrA02 4.10.520.10 Few Secondary Structures › Irregular › HU Protein; Chain A › IHF-like DNA-binding proteins 0.51 34.0 3.05e-01 71.2% 48.9%
2ebeA00 3.30.70.2290 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Protein of unknown function (DUF3208) 0.50 43.0 3.64e-01 100.0% 56.6%
1bt9A00 2.40.160.10 Mainly Beta › Beta Barrel › Porin › Porin 0.50 41.0 2.66e-01 100.0% 95.3%
5f1sA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.50 45.0 3.71e-01 100.0% 56.9%
4k02A00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.50 44.0 3.46e-01 100.0% 46.5%
ECOD (50)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3281898 12.3.1.8 beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › Glyco_hydro_65N 0.74 51.0 3.29e-01 72.9% 56.7%
3536437 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.69 62.0 4.64e-01 100.0% 57.2%
4575105 882.1.1.0 a+b two layers › Ribosomal protein L5 › Ribosomal protein L5 › Ribosomal protein L5 0.69 62.0 4.55e-01 100.0% 81.3%
4380266 223.1.1.0 a+b three layers › Profilin-like › sensor domains › sensor domains 0.65 58.0 3.86e-01 100.0% 41.7%
5049631 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.64 56.0 4.26e-01 100.0% 68.6%
5018724 872.3.1.0 a+b two layers › Dodecin subunit-like › YbjQ-like › YbjQ-like 0.63 58.0 4.89e-01 100.0% 96.8%
3938228 5090.1.1.8 beta complex topology › Viral glycoprotein, central and dimerisation domains-like › Viral glycoprotein, central and dimerisation domains › Viral glycoprotein, central and dimerisation domains › EFF-AFF 0.63 56.0 3.47e-01 100.0% 18.6%
3639442 3100.1.1.0 extended segments › Synaptobrevin › Synaptobrevin › Synaptobrevin 0.63 57.0 3.86e-01 100.0% 40.0%
5050618 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.63 57.0 4.25e-01 100.0% 61.4%
3717061 304.107.1.5 a+b two layers › Alpha-beta plaits › Aminomethyltransferase folate-binding domain › Aminomethyltransferase folate-binding domain › BCS1_N 0.63 57.0 4.50e-01 100.0% 70.4%
5053601 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.62 56.0 4.12e-01 100.0% 54.7%
4304761 306.7.1.1 a+b two layers › Glucose permease domain IIB-like › Trigger factor ribosome-binding domain › Trigger factor ribosome-binding domain › Trigger_N 0.62 43.0 3.46e-01 72.9% 98.3%
3495780 304.107.1.5 a+b two layers › Alpha-beta plaits › Aminomethyltransferase folate-binding domain › Aminomethyltransferase folate-binding domain › BCS1_N 0.62 55.0 4.02e-01 98.3% 68.4%
3774464 223.2.1.25 a+b three layers › Profilin-like › profilin-like › profilin-like › Avl9 0.62 54.0 4.01e-01 100.0% 66.9%
4928030 223.1.1.0 a+b three layers › Profilin-like › sensor domains › sensor domains 0.62 53.0 4.23e-01 96.6% 65.8%
3400500 223.2.1.25 a+b three layers › Profilin-like › profilin-like › profilin-like › Avl9 0.61 54.0 3.93e-01 100.0% 64.2%
4065862 4020.1.1.1 a+b two layers › a+b domain in D-aminoacid aminotransferase-like PLP-dependent enzymes › a+b domain in D-aminoacid aminotransferase-like PLP-dependent enzymes › a+b domain in D-aminoacid aminotransferase-like PLP-dependent enzymes › Aminotran_4 0.61 52.0 3.87e-01 100.0% 81.2%
4970968 331.10.2.0 a+b two layers › TBP-like › S-adenosylmethionine decarboxylase-related › Bacterial S-adenosylmethionine decarboxylase 0.61 54.0 4.36e-01 100.0% 73.5%
3600849 223.1.1.0 a+b three layers › Profilin-like › sensor domains › sensor domains 0.60 52.0 3.92e-01 100.0% 61.3%
3536857 145.1.1.0 alpha arrays › F-box domain › F-box domain › F-box domain 0.59 41.0 2.98e-01 72.9% 64.8%
1835333 244.1.1.0 a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C 0.59 53.0 4.15e-01 100.0% 53.7%
4011446 12.3.1.0 beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich 0.59 52.0 3.25e-01 100.0% 33.9%
3495172 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.58 49.0 3.68e-01 100.0% 76.4%
3498706 11.2.1.18 beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › CEP76-C2 0.57 47.0 3.52e-01 100.0% 94.3%
3220403 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.57 51.0 4.22e-01 100.0% 78.1%
4004480 2011.1.1.23 a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Zn-dependent exopeptidases › Zn-dependent exopeptidases › M20_dimer 0.57 51.0 4.03e-01 100.0% 63.3%
3519702 223.1.1.0 a+b three layers › Profilin-like › sensor domains › sensor domains 0.57 48.0 3.93e-01 100.0% 86.7%
4106330 244.1.1.0 a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C 0.57 47.0 3.57e-01 100.0% 40.6%
3858552 220.1.1.5 beta barrels › PH domain-like › PH domain-like › PH domain-like › PID 0.56 50.0 3.48e-01 100.0% 56.8%
3189301 304.25.1.0 a+b two layers › Alpha-beta plaits › Bacterial exopeptidase dimerisation domain › Bacterial exopeptidase dimerisation domain 0.56 50.0 4.04e-01 100.0% 69.1%
4027807 60.1.1.0 beta barrels › SPOC domain-like › SPOC domain-related › SPOC domain 0.55 50.0 3.94e-01 100.0% 55.8%
3736044 244.1.1.9 a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C › GMC_oxred_C 0.55 46.0 3.18e-01 100.0% 44.3%
3736229 220.1.1.197 beta barrels › PH domain-like › PH domain-like › PH domain-like › PF28623 0.55 50.0 3.86e-01 100.0% 71.2%
1314824 304.28.1.1 a+b two layers › Alpha-beta plaits › Ferredoxin domains in multidrug efflux transporter › Multidrug efflux transporter AcrB pore domain › ACR_tran 0.55 49.0 3.95e-01 100.0% 58.8%
3244272 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.55 47.0 3.85e-01 100.0% 64.3%
3241951 60.1.1.0 beta barrels › SPOC domain-like › SPOC domain-related › SPOC domain 0.55 49.0 3.89e-01 100.0% 52.1%
1935959 5090.1.1.1 beta complex topology › Viral glycoprotein, central and dimerisation domains-like › Viral glycoprotein, central and dimerisation domains › Viral glycoprotein, central and dimerisation domains › Flavi_glycoprot 0.54 46.0 3.89e-01 100.0% 56.7%
2486980 221.16.1.1 a+b two layers › beta-Grasp › beta-grasp domain of MAJIN › beta-grasp domain of MAJIN › MAJIN 0.54 47.0 3.98e-01 100.0% 93.2%
4953376 244.1.1.0 a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C 0.54 47.0 3.53e-01 100.0% 40.0%
5045641 284.1.1.1 a+b two layers › FKBP-like › FKBP-like › FKBP-like › FKBP_C 0.54 46.0 4.02e-01 100.0% 88.4%
3694783 327.16.1.0 a+b two layers › Alpha-lytic protease prodomain-like › Ring-building motif II in type III secretion system › Ring-building motif II in type III secretion system 0.53 46.0 3.39e-01 100.0% 47.6%
3888642 273.1.1.1 a+b three layers › PR-1-like › PR-1-like › PR-1-like › CAP 0.53 46.0 3.29e-01 100.0% 43.1%
4926963 4020.1.1.1 a+b two layers › a+b domain in D-aminoacid aminotransferase-like PLP-dependent enzymes › a+b domain in D-aminoacid aminotransferase-like PLP-dependent enzymes › a+b domain in D-aminoacid aminotransferase-like PLP-dependent enzymes › Aminotran_4 0.53 47.0 3.60e-01 100.0% 89.6%
3867705 3338.2.1.1 a+b two layers › Fragilysin-3 prodomain-like › Type II secretion chaperone CpaB › Type II secretion chaperone CpaB › Pep_M12B_propep 0.52 45.0 3.54e-01 100.0% 100.0%
3571806 3338.2.1.0 a+b two layers › Fragilysin-3 prodomain-like › Type II secretion chaperone CpaB › Type II secretion chaperone CpaB 0.51 44.0 3.77e-01 100.0% 100.0%
3225950 304.126.1.1 a+b two layers › Alpha-beta plaits › ferredoxin-like domain in vacuolar ATP synthase subunit C › ferredoxin-like domain in vacuolar ATP synthase subunit C › V_ATPase_I 0.51 41.0 3.32e-01 100.0% 45.0%
4495404 247.1.1.11 a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Lactamase_B_2 0.51 45.0 2.86e-01 100.0% 56.2%
4029407 246.3.1.1 a+b four layers › Carbon-nitrogen hydrolase-like › DNase I-like › DNase I-like › Exo_endo_phos 0.51 46.0 2.96e-01 100.0% 22.7%
5048021 247.1.1.11 a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Lactamase_B_2 0.51 43.0 2.92e-01 100.0% 60.0%
3825428 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.50 41.0 3.01e-01 89.8% 39.4%
D2 medium residues 29-90_114-136
PDB
Domain cluster: representative
CATH (6)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2gx9A00 3.30.420.330 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Influenza virus non-structural protein, effector domain 0.66 39.0 3.42e-01 100.0% 39.7%
3e29B00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.65 38.0 3.26e-01 100.0% 36.6%
3kg6C00 3.10.129.110 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Polyketide synthase dehydratase 0.64 40.0 2.81e-01 100.0% 19.5%
5bp3B00 3.10.129.110 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Polyketide synthase dehydratase 0.63 37.0 2.59e-01 100.0% 17.0%
3kg7B00 3.10.129.110 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Polyketide synthase dehydratase 0.63 37.0 2.55e-01 100.0% 17.9%
2mhgA00 2.20.130.30 Mainly Beta › Single Sheet › S-adenosyl-L-methionine-dependent methyltransferases › Protein of unknown function DUF2782 0.57 26.0 2.81e-01 71.8% 44.0%
ECOD (7)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3499080 11.2.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain 0.55 47.0 3.87e-01 92.9% 67.3%
5053491 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.55 41.0 3.61e-01 81.2% 73.1%
5033585 11.1.1.9 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Arrestin_N 0.54 43.0 3.57e-01 87.1% 98.7%
3620912 898.1.1.0 a+b two layers › a+b domain in Ribosomal protein L1 › a+b domain in Ribosomal protein L1 › a+b domain in Ribosomal protein L1 0.52 46.0 3.97e-01 100.0% 92.1%
4074440 11.1.1.154 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › GlgE_dom_N_S 0.51 44.0 3.46e-01 97.6% 98.9%
3241065 11.1.1.2 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 0.51 41.0 3.94e-01 89.4% 91.0%
None 0.50 39.0 2.37e-01 81.2% 63.2%