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MG592425.1__AUR83804.1__NVP1042O_16__00016

Bact-Vir

MG592425.1__AUR83804.1__NVP1042O_16__00016

Identity

Accession:
MG592425 ↗
Kingdom:
phage

Quality

81.7 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Vibrio_phage_1.042.O._10N.286.45.B8

TaxID: 1881301

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 8-61
PDB
Domain cluster: representative
CATH (7)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4tkcA00 2.90.10.10 Mainly Beta › Orthogonal Prism › Agglutinin, subunit A › Bulb-type lectin domain 0.63 42.0 3.37e-01 70.4% 95.8%
4g7nA02 3.30.1120.130 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › 0.60 42.0 3.53e-01 74.1% 46.4%
3v9fA02 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.58 41.0 2.59e-01 72.2% 37.8%
8f5pC01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.57 45.0 2.86e-01 90.7% 36.9%
2xzmR01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.55 42.0 2.60e-01 85.2% 37.9%
3vsmA03 2.60.40.4340 Mainly Beta › Sandwich › Immunoglobulin-like › 0.51 41.0 3.46e-01 90.7% 97.9%
2m3xC02 2.40.10.360 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.51 38.0 3.53e-01 81.5% 82.6%
ECOD (12)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4946272 4018.1.1.2 ↗ a+b two layers › a+b domain in carbohydrate phosphatases › a+b domain in carbohydrate phosphatases › a+b domain in carbohydrate phosphatases › Inositol_P 0.75 51.0 3.63e-01 72.2% 29.4%
5046191 4018.1.1.2 ↗ a+b two layers › a+b domain in carbohydrate phosphatases › a+b domain in carbohydrate phosphatases › a+b domain in carbohydrate phosphatases › Inositol_P 0.71 49.0 3.48e-01 72.2% 29.4%
3275427 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.64 44.0 2.68e-01 72.2% 44.5%
4680317 210.1.3.4 ↗ a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases › GATase_6 0.60 47.0 3.11e-01 88.9% 33.2%
4033695 79.1.1.0 ↗ beta duplicates or obligate multimers › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain 0.58 47.0 3.97e-01 98.1% 73.3%
3264116 5.1.5.76 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › WD40, Beta-prop_NOL10_N 0.58 44.0 2.68e-01 83.3% 36.3%
5040649 5.1.4.40 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › PQQ_2 0.57 43.0 2.96e-01 85.2% 68.2%
2512603 6129.1.1.1 ↗ beta barrels › Repulsive guidance molecule (RGM) family › Repulsive guidance molecule (RGM) family › Repulsive guidance molecule (RGM) family › VWD 0.55 47.0 3.32e-01 100.0% 47.5%
3392175 5.1.3.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.53 41.0 2.68e-01 88.9% 44.1%
3711598 327.11.2.3 ↗ a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_6 0.53 38.0 3.03e-01 81.5% 74.6%
4641087 77.2.1.1 ↗ beta meanders › open-sided beta-meander › Histone H3 K4-specific methyltransferase SET7/9-N › Histone H3 K4-specific methyltransferase SET7/9-N › MORN 0.52 41.0 3.54e-01 92.6% 82.1%
3641401 2004.1.1.250 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Kinesin,Microtub_bd 0.52 39.0 2.35e-01 85.2% 79.3%
D2 medium residues 62-145
PDB
Domain cluster: representative
CATH (8)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1goiB03 2.10.10.20 Mainly Beta › Ribbon › Seminal Fluid Protein PDC-109 (Domain B) › Carbohydrate-binding module superfamily 5/12 0.70 39.0 4.78e-01 90.5% 90.2%
1yueA02 2.10.10.40 Mainly Beta › Ribbon › Seminal Fluid Protein PDC-109 (Domain B) › 0.61 42.0 4.81e-01 90.5% 100.0%
1aiwA00 2.10.10.20 Mainly Beta › Ribbon › Seminal Fluid Protein PDC-109 (Domain B) › Carbohydrate-binding module superfamily 5/12 0.61 39.0 4.33e-01 85.7% 87.1%
3ejbB01 3.30.43.20 Alpha Beta › 2-Layer Sandwich › Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 2 › 0.60 33.0 3.41e-01 70.2% 55.4%
3g1jA00 2.30.30.350 Mainly Beta › Roll › SH3 type barrels. › mobile metagenome of vibrio cholerae. Integron cassette protein vch_cass4. 0.60 37.0 3.63e-01 70.2% 57.8%
1jyhA00 3.20.80.10 Alpha Beta › Alpha-Beta Barrel › Multidrug-efflux Transporter 1 Regulator Bmrr; Chain A › Regulatory factor, effector binding domain 0.54 44.0 3.69e-01 92.9% 91.0%
2m9vA00 2.40.50.960 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.52 39.0 3.17e-01 82.1% 84.7%
3iuwA00 2.30.130.30 Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › Hypothetical protein. 0.51 41.0 4.26e-01 88.1% 97.5%
ECOD (7)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3971347 64.3.1.1 ↗ beta meanders › WW domain-like › Carbohydrate binding domain › Carbohydrate binding domain › CBM_5_12 0.63 39.0 4.55e-01 92.9% 91.4%
4542692 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.62 46.0 4.61e-01 97.6% 77.6%
1002430 64.3.1.0 ↗ beta meanders › WW domain-like › Carbohydrate binding domain › Carbohydrate binding domain 0.61 42.0 4.81e-01 90.5% 100.0%
3393161 314.1.1.0 ↗ a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases 0.60 49.0 3.59e-01 90.5% 71.4%
3907176 4.1.1.248 ↗ beta barrels › SH3 › SH3 › SH3 › CABIT 0.60 46.0 4.52e-01 98.8% 76.7%
3902139 4.1.1.99 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_10 0.59 38.0 4.07e-01 97.6% 77.1%
3252646 1.1.9.0 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain 0.53 44.0 3.69e-01 90.5% 65.7%