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MG592428.1__AUR83948.1__NVP1046O_23__00023

Bact-Vir

MG592428.1__AUR83948.1__NVP1046O_23__00023

Identity

Accession:
MG592428 ↗
Kingdom:
phage

Quality

69.9 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Vibrio_phage_1.046.O._10N.286.52.E3

TaxID: 1881423

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-80
PDB
Domain cluster: representative
CATH (50)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3j7aF02 2.40.50.740 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Ribosomal protein S4, central domain 0.77 49.0 5.84e-01 81.0% 100.0%
3kbgA02 2.40.50.740 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Ribosomal protein S4, central domain 0.75 49.0 5.80e-01 83.5% 100.0%
4bpnW02 2.40.50.740 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Ribosomal protein S4, central domain 0.75 48.0 5.70e-01 81.0% 100.0%
6az1E02 2.40.50.740 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Ribosomal protein S4, central domain 0.75 48.0 5.73e-01 81.0% 100.0%
3dsoA00 2.40.10.300 Mainly Beta › Beta Barrel › Thrombin, subunit H › Copper resistance protein K 0.73 35.0 3.80e-01 97.5% 54.5%
6rjiA03 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.71 46.0 5.45e-01 83.5% 100.0%
3oyyA02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.70 53.0 5.71e-01 87.3% 98.5%
3goxA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.67 39.0 4.57e-01 100.0% 88.2%
4up7A01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.67 53.0 4.27e-01 86.1% 70.4%
3c4sA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.65 39.0 4.39e-01 100.0% 80.7%
2wfwB02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.65 49.0 5.25e-01 87.3% 94.0%
4dapA01 2.40.50.580 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.65 55.0 5.57e-01 93.7% 92.5%
4m4zA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.65 37.0 4.41e-01 97.5% 91.5%
1ib8A02 2.30.30.180 Mainly Beta › Roll › SH3 type barrels. › Ribosome maturation factor RimP, C-terminal domain 0.65 39.0 4.18e-01 100.0% 70.1%
3t0pA01 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.64 56.0 4.40e-01 100.0% 65.7%
6j8yA00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.63 55.0 3.90e-01 100.0% 47.5%
4f88102 3.90.1720.60 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › 0.63 40.0 2.98e-01 100.0% 24.4%
1rwzA00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.61 53.0 3.85e-01 100.0% 46.3%
2k5nA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.61 45.0 4.67e-01 83.5% 86.5%
2rcnA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.61 42.0 4.61e-01 86.1% 95.1%
1x6bA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.60 38.0 4.13e-01 100.0% 78.1%
1zuyA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.60 39.0 4.36e-01 98.7% 89.7%
3h8zA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.60 34.0 4.04e-01 100.0% 89.6%
6o5cA02 2.30.30.90 Mainly Beta › Roll › SH3 type barrels. › Ferrous iron transport protein A (FeoA) 0.60 42.0 4.31e-01 100.0% 77.6%
1vq8Q00 2.30.30.70 Mainly Beta › Roll › SH3 type barrels. › Ribosomal protein L21 0.60 40.0 3.81e-01 100.0% 56.8%
3bdlA01 2.40.50.90 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.60 52.0 4.08e-01 96.2% 79.5%
1sxjH02 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.59 52.0 4.47e-01 100.0% 96.1%
3d0fA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.59 46.0 4.80e-01 87.3% 100.0%
4py5A01 3.30.310.10 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › TATA-Binding Protein 0.59 33.0 3.48e-01 79.7% 58.3%
6j8yC00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.58 49.0 3.56e-01 98.7% 48.2%
3udfA03 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.58 45.0 4.26e-01 84.8% 82.1%
1t6lA00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.58 49.0 3.60e-01 100.0% 48.6%
1ud9A00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.58 49.0 3.58e-01 98.7% 47.5%
2cxhA01 3.40.50.10480 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Brix domain 0.57 48.0 3.73e-01 92.4% 99.4%
2dgyA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.57 43.0 4.38e-01 86.1% 83.5%
2do3A01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.56 33.0 3.74e-01 98.7% 86.3%
2lmcB00 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.56 41.0 4.48e-01 93.7% 100.0%
5bp3B00 3.10.129.110 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Polyketide synthase dehydratase 0.56 49.0 3.40e-01 100.0% 35.8%
4boeA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.55 39.0 3.19e-01 100.0% 38.3%
4wfvA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.55 45.0 3.70e-01 91.1% 72.5%
2essA02 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.55 47.0 4.46e-01 100.0% 92.9%
3frnA01 3.10.129.70 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › 0.55 44.0 3.74e-01 91.1% 72.7%
2rf4E02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.53 42.0 4.23e-01 92.4% 100.0%
1vlrA01 3.30.200.40 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Scavenger mRNA decapping enzyme, N-terminal domain 0.52 30.0 2.80e-01 87.3% 42.9%
4dnuA00 2.130.10.30 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Regulator of chromosome condensation 1/beta-lactamase-inhibitor protein II 0.52 43.0 2.79e-01 89.9% 99.7%
2auwA01 3.30.2020.10 Alpha Beta › 2-Layer Sandwich › NE0471 N-terminal domain-like › NE0471-like N-terminal domain 0.52 46.0 4.54e-01 97.5% 98.8%
2czoA00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.52 45.0 3.83e-01 97.5% 95.4%
4mveA00 2.40.128.580 Mainly Beta › Beta Barrel › Lipocalin › GXWXG domain 0.51 46.0 3.74e-01 100.0% 78.9%
2re3A02 2.30.270.10 Mainly Beta › Roll › duf1285 protein fold › duf1285 protein 0.51 38.0 4.03e-01 83.5% 88.6%
3ap9A00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.51 45.0 3.66e-01 100.0% 66.9%
ECOD (57)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4932492 2.1.1.9 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosomal_S4e 0.82 55.0 6.30e-01 86.1% 91.7%
4504019 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.82 55.0 6.26e-01 86.1% 91.7%
4043931 2.1.1.9 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosomal_S4e 0.80 57.0 6.47e-01 87.3% 98.3%
2579116 2.1.1.9 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosomal_S4e 0.77 54.0 6.00e-01 86.1% 93.5%
4623924 2.1.1.9 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosomal_S4e 0.76 50.0 5.81e-01 86.1% 98.2%
3679125 148.1.3.0 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.75 51.0 3.85e-01 86.1% 30.6%
4933970 2.1.1.9 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosomal_S4e 0.74 54.0 6.04e-01 86.1% 100.0%
4072958 2.1.1.9 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosomal_S4e 0.74 54.0 5.84e-01 86.1% 92.3%
3970344 2.4.1.2 ↗ beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 0.74 51.0 4.35e-01 74.7% 46.7%
4943272 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.74 53.0 5.93e-01 83.5% 98.3%
3662052 2.1.1.9 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosomal_S4e 0.74 48.0 4.75e-01 84.8% 62.4%
4440203 2.1.1.9 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosomal_S4e 0.73 50.0 5.61e-01 87.3% 93.3%
3367301 2.1.1.48 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Elong-fact-P_C 0.73 49.0 5.64e-01 86.1% 100.0%
4023340 2.1.1.230 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › PF26639 0.72 55.0 5.81e-01 98.7% 91.4%
4949453 2.1.1.9 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosomal_S4e 0.72 52.0 5.68e-01 87.3% 92.3%
3166679 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.72 43.0 2.71e-01 100.0% 12.7%
4976969 2.1.1.9 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosomal_S4e 0.71 58.0 5.99e-01 86.1% 97.3%
3641913 2.1.1.9 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosomal_S4e 0.70 51.0 5.21e-01 87.3% 80.0%
3507003 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.69 47.0 4.85e-01 100.0% 74.7%
4526294 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.68 51.0 5.47e-01 86.1% 98.5%
5022847 2.1.1.9 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosomal_S4e 0.67 55.0 5.64e-01 87.3% 93.3%
4028871 2.1.1.10 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › EFP 0.66 49.0 5.05e-01 86.1% 86.3%
4959167 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.66 49.0 5.30e-01 79.7% 100.0%
4387556 3468.1.1.1 ↗ a+b two layers › HLTF protein HIRAN domain › HLTF protein HIRAN domain › HLTF protein HIRAN domain › HIRAN 0.66 52.0 4.84e-01 86.1% 70.7%
4357177 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.65 44.0 5.02e-01 81.0% 100.0%
3244229 227.1.1.11 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › Hus1 0.65 56.0 4.90e-01 98.7% 96.0%
4177200 4.1.1.3 ↗ beta barrels › SH3 › SH3 › SH3 › KOW 0.65 37.0 4.26e-01 100.0% 80.0%
4033110 4.1.1.40 ↗ beta barrels › SH3 › SH3 › SH3 › FeoA 0.64 45.0 4.62e-01 100.0% 78.7%
4101502 4.1.1.3 ↗ beta barrels › SH3 › SH3 › SH3 › KOW 0.64 37.0 4.23e-01 100.0% 81.5%
3511321 5.1.4.298 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_ELP1_1st, Beta-prop_ELP1_2nd 0.64 43.0 2.55e-01 97.5% 8.9%
4998585 227.1.1.6 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C 0.63 55.0 4.85e-01 98.7% 95.8%
4941299 4.1.1.14 ↗ beta barrels › SH3 › SH3 › SH3 › Ribosomal_L21e 0.63 41.0 4.09e-01 100.0% 62.4%
3650026 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.63 47.0 5.00e-01 86.1% 98.5%
3839910 2.1.1.7 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › S1 0.63 46.0 5.01e-01 83.5% 100.0%
5074039 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.63 42.0 4.27e-01 100.0% 72.0%
5004478 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.63 49.0 4.84e-01 87.3% 95.3%
3896519 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.63 39.0 4.60e-01 98.7% 100.0%
5011500 4.1.1.14 ↗ beta barrels › SH3 › SH3 › SH3 › Ribosomal_L21e 0.62 41.0 3.88e-01 100.0% 54.0%
5008645 4.1.1.40 ↗ beta barrels › SH3 › SH3 › SH3 › FeoA 0.62 43.0 4.41e-01 100.0% 77.3%
1924009 227.1.1.10 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › Herpes_PAP 0.61 53.0 4.53e-01 100.0% 93.2%
3941391 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.60 35.0 3.82e-01 100.0% 71.7%
4946028 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.60 40.0 3.90e-01 100.0% 61.1%
959119 4.1.1.75 ↗ beta barrels › SH3 › SH3 › SH3 › NdhS 0.59 36.0 4.02e-01 100.0% 87.0%
1832945 2.1.1.78 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › PCB_OB 0.59 46.0 4.26e-01 87.3% 69.5%
3939128 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.56 41.0 3.66e-01 87.3% 54.5%
4940177 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.56 38.0 4.08e-01 81.0% 80.0%
3493556 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.55 42.0 3.73e-01 87.3% 57.3%
4544568 719.1.1.5 ↗ beta barrels › XRCC4, N-terminal domain-like › XRCC4, N-terminal domain › XRCC4, N-terminal domain › PF27933 0.55 46.0 4.22e-01 98.7% 91.8%
3242411 719.2.1.1 ↗ beta barrels › XRCC4, N-terminal domain-like › NE0471 N-terminal domain-like › NE0471 N-terminal domain-like › GBBH-like_N 0.54 48.0 4.32e-01 98.7% 92.7%
3520270 101.35.1.5 ↗ alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › RecX_HTH1 0.54 48.0 4.33e-01 97.5% 81.9%
3743110 220.1.1.19 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › Rttp106-like_middle 0.53 43.0 4.01e-01 91.1% 80.0%
3547186 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.53 41.0 3.47e-01 87.3% 51.2%
3278684 9.23.1.0 ↗ beta barrels › Lipocalins/Streptavidin › Hypothetical protein BT_0869 › Hypothetical protein BT_0869 0.52 40.0 3.53e-01 92.4% 55.8%
6292 719.2.1.2 ↗ beta barrels › XRCC4, N-terminal domain-like › NE0471 N-terminal domain-like › NE0471 N-terminal domain-like › DUF2442 0.51 45.0 4.50e-01 98.7% 97.6%
3285421 9.14.1.0 ↗ beta barrels › Lipocalins/Streptavidin › Uncharacterized protein YLR301W › Uncharacterized protein YLR301W 0.51 41.0 3.44e-01 88.6% 77.2%
3523736 5.1.4.272 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, Beta-prop_EML_2 0.50 40.0 2.69e-01 88.6% 76.7%
3906893 385.1.1.2 ↗ few secondary structure elements › Cystine-knot cytokines › Cystine-knot cytokines › Cystine-knot cytokines › TGF_beta 0.50 39.0 3.52e-01 84.8% 70.0%