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MG592428.1__AUR83995.1__NVP1046O_70__00070

Bact-Vir

MG592428.1__AUR83995.1__NVP1046O_70__00070

Identity

Accession:
MG592428 ↗
Kingdom:
phage

Quality

72.8 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Vibrio_phage_1.046.O._10N.286.52.E3

TaxID: 1881423

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 7-50
PDB
Domain cluster: representative
CATH (48)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3j7aF02 2.40.50.740 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Ribosomal protein S4, central domain 0.72 48.0 4.62e-01 70.5% 94.1%
3q5zA02 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.70 58.0 4.35e-01 100.0% 81.0%
6rjiA03 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.70 48.0 4.56e-01 72.7% 92.3%
2eqkA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.69 57.0 4.94e-01 100.0% 58.9%
2w1zA02 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.67 54.0 3.98e-01 100.0% 84.4%
4dq2A03 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.66 50.0 5.01e-01 97.7% 83.0%
2ldmA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.64 51.0 4.87e-01 97.7% 75.5%
3oymA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.63 51.0 4.57e-01 100.0% 67.1%
2diqA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.63 52.0 4.09e-01 97.7% 43.0%
3askA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.63 50.0 4.67e-01 100.0% 79.0%
3kbgA03 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.63 51.0 4.79e-01 100.0% 75.0%
1gv4A01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.62 49.0 3.46e-01 97.7% 47.9%
3bs1A00 2.40.50.1020 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › LytTr DNA-binding domain 0.61 47.0 3.76e-01 93.2% 72.8%
4emiA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.61 48.0 3.32e-01 95.5% 55.1%
1ssfA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.60 48.0 4.58e-01 100.0% 76.4%
4eqsA02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.60 50.0 3.60e-01 97.7% 80.4%
1mhnA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.60 51.0 4.72e-01 100.0% 78.0%
3ntkA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.60 51.0 4.23e-01 97.7% 55.0%
2z4hA01 2.40.128.300 Mainly Beta › Beta Barrel › Lipocalin › NlpE, N-terminal domain 0.60 48.0 4.17e-01 100.0% 94.9%
1inlC02 2.30.140.10 Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain 0.60 47.0 4.36e-01 100.0% 76.6%
2d9tA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.60 49.0 4.81e-01 97.7% 95.9%
3npfB01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.60 50.0 4.44e-01 97.7% 83.3%
2digA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.59 47.0 4.26e-01 100.0% 63.2%
3ukhA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.59 48.0 2.75e-01 97.7% 49.7%
3kljA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.58 46.0 3.18e-01 97.7% 51.4%
5jciA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.58 46.0 3.10e-01 97.7% 51.7%
2qntA01 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.58 47.0 3.55e-01 93.2% 83.6%
3lxdA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.58 46.0 3.15e-01 97.7% 50.0%
2dk3A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.58 46.0 3.91e-01 100.0% 61.6%
1zuyA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.58 46.0 4.34e-01 95.5% 87.9%
4h4rA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.57 46.0 3.17e-01 97.7% 50.8%
1yn8A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.57 46.0 4.34e-01 97.7% 86.4%
4hcsA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.57 47.0 4.10e-01 93.2% 61.2%
3aljA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.57 45.0 2.97e-01 95.5% 36.9%
2re3A02 2.30.270.10 Mainly Beta › Roll › duf1285 protein fold › duf1285 protein 0.56 48.0 4.14e-01 97.7% 75.7%
1mixA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.56 46.0 3.80e-01 100.0% 73.1%
3h27A00 3.50.50.100 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › 0.56 44.0 2.60e-01 97.7% 22.1%
2xzhA00 2.130.10.110 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Clathrin heavy-chain terminal domain 0.56 45.0 2.70e-01 93.2% 14.8%
4uopA01 3.30.1120.170 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › 0.56 37.0 3.02e-01 97.7% 33.3%
2zkmX01 2.30.29.240 Mainly Beta › Roll › PH-domain like › 0.55 41.0 2.86e-01 95.5% 40.3%
1q1rA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.55 42.0 2.92e-01 97.7% 50.3%
2vpaA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.53 39.0 2.75e-01 95.5% 66.2%
1exaA00 1.10.565.10 Mainly Alpha › Orthogonal Bundle › Retinoid X Receptor › Retinoid X Receptor 0.53 41.0 2.69e-01 93.2% 34.3%
4b9wA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.53 40.0 3.92e-01 100.0% 76.8%
2ra2B00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.52 42.0 4.00e-01 100.0% 75.9%
3rlfF02 3.10.650.10 Alpha Beta › Roll › MalF N-terminal region-like › MalF N-terminal region-like 0.52 36.0 3.07e-01 88.6% 40.2%
2k57A00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.52 41.0 3.91e-01 95.5% 76.4%
1xkiA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.51 41.0 3.13e-01 100.0% 60.2%
ECOD (62)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3805766 4.1.1.28 ↗ beta barrels › SH3 › SH3 › SH3 › BPL_C 0.71 59.0 5.55e-01 97.7% 83.6%
3831339 314.1.1.0 ↗ a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases 0.71 58.0 3.61e-01 97.7% 17.4%
3593607 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.70 58.0 5.54e-01 100.0% 85.5%
3614414 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.70 55.0 5.12e-01 100.0% 69.0%
3231177 4.1.1.333 ↗ beta barrels › SH3 › SH3 › SH3 › PF29330 0.68 54.0 5.31e-01 100.0% 82.0%
3200493 4.1.1.33 ↗ beta barrels › SH3 › SH3 › SH3 › Myosin_N 0.68 55.0 5.18e-01 97.7% 74.5%
3621818 4.1.1.333 ↗ beta barrels › SH3 › SH3 › SH3 › PF29330 0.68 53.0 5.15e-01 100.0% 80.0%
3993250 4.1.1.333 ↗ beta barrels › SH3 › SH3 › SH3 › PF29330 0.68 53.0 5.02e-01 100.0% 72.7%
4014906 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.67 54.0 4.54e-01 97.7% 51.2%
3533318 4.1.1.33 ↗ beta barrels › SH3 › SH3 › SH3 › Myosin_N 0.67 53.0 5.20e-01 97.7% 82.0%
1263713 4.1.1.102 ↗ beta barrels › SH3 › SH3 › SH3 › Tudor_3 0.66 53.0 5.10e-01 97.7% 78.8%
3995719 2.1.1.7 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › S1 0.66 46.0 4.02e-01 75.0% 51.4%
3441677 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.65 55.0 5.33e-01 97.7% 92.0%
3397846 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.65 53.0 4.97e-01 100.0% 74.5%
4609000 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.65 44.0 3.93e-01 70.5% 92.3%
3226827 4.1.1.133 ↗ beta barrels › SH3 › SH3 › SH3 › SMN_YG-box 0.65 54.0 4.17e-01 97.7% 44.8%
3855972 4.1.1.253 ↗ beta barrels › SH3 › SH3 › SH3 › DUF4537 0.64 53.0 4.72e-01 97.7% 64.6%
1289661 4.1.1.101 ↗ beta barrels › SH3 › SH3 › SH3 › Tudor_2 0.64 50.0 4.53e-01 100.0% 61.2%
3523979 604.12.1.118 ↗ alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › DUF4537 0.64 53.0 4.83e-01 97.7% 70.0%
3510676 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.64 53.0 4.23e-01 97.7% 45.3%
3274551 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.64 52.0 4.50e-01 100.0% 57.3%
3868320 4.1.1.65 ↗ beta barrels › SH3 › SH3 › SH3 › 53-BP1_Tudor 0.64 53.0 4.76e-01 97.7% 84.6%
3472332 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.63 50.0 4.75e-01 100.0% 76.4%
3478898 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.63 51.0 4.68e-01 100.0% 67.7%
3797642 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.63 52.0 3.50e-01 97.7% 62.7%
3267345 4.1.1.33 ↗ beta barrels › SH3 › SH3 › SH3 › Myosin_N 0.63 50.0 4.74e-01 97.7% 74.5%
3816553 4.1.1.306 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_VIII-1_N 0.63 48.0 4.66e-01 97.7% 74.5%
4957377 4.1.1.28 ↗ beta barrels › SH3 › SH3 › SH3 › BPL_C 0.62 47.0 4.24e-01 95.5% 58.7%
3501574 4.1.1.118 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_15 0.62 52.0 4.49e-01 100.0% 82.7%
3622389 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.61 51.0 4.59e-01 97.7% 69.2%
3885050 4.1.1.360 ↗ beta barrels › SH3 › SH3 › SH3 › KOW, G-patch_2 0.61 50.0 3.45e-01 100.0% 26.9%
3935130 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.61 48.0 4.65e-01 100.0% 78.2%
3793656 4.1.1.169 ↗ beta barrels › SH3 › SH3 › SH3 › DUF4819 0.61 50.0 3.61e-01 100.0% 34.5%
3241817 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.61 48.0 4.53e-01 100.0% 75.0%
4953223 4.1.1.28 ↗ beta barrels › SH3 › SH3 › SH3 › BPL_C 0.61 48.0 4.67e-01 97.7% 78.0%
4985100 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.61 45.0 4.42e-01 95.5% 74.0%
3810217 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.60 48.0 4.66e-01 95.5% 82.0%
4798110 2003.1.2.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain 0.60 42.0 3.10e-01 77.3% 24.6%
4890012 2484.1.1.209 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › IN_DBD_C 0.60 49.0 3.60e-01 97.7% 32.1%
2525277 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.59 47.0 4.43e-01 100.0% 74.6%
2092580 2003.1.2.24 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox_2 0.58 46.0 3.58e-01 95.5% 83.5%
3968262 2003.1.2.24 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox_2 0.58 46.0 2.75e-01 97.7% 33.7%
4377704 2003.1.2.24 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox_2 0.58 45.0 3.36e-01 97.7% 72.9%
3989485 4.1.1.28 ↗ beta barrels › SH3 › SH3 › SH3 › BPL_C 0.57 47.0 4.59e-01 100.0% 94.0%
3304602 4.1.1.427 ↗ beta barrels › SH3 › SH3 › SH3 › F-box 0.57 44.0 3.65e-01 100.0% 44.2%
3697501 2003.1.2.16 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_3,NAD_binding_8 0.57 46.0 2.99e-01 97.7% 60.4%
3936726 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.57 46.0 4.40e-01 100.0% 81.8%
5052762 2003.1.2.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain 0.57 45.0 3.85e-01 97.7% 89.4%
2561577 4.1.1.28 ↗ beta barrels › SH3 › SH3 › SH3 › BPL_C 0.57 46.0 4.29e-01 100.0% 73.8%
3953250 2003.1.2.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain 0.56 44.0 2.91e-01 97.7% 41.7%
5024507 2003.1.2.24 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox_2 0.56 44.0 2.68e-01 97.7% 25.7%
4031565 2003.1.2.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain 0.56 44.0 2.94e-01 95.5% 43.6%
3502290 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.56 44.0 4.14e-01 100.0% 75.0%
2094867 2003.1.2.24 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox_2 0.56 43.0 3.06e-01 97.7% 55.2%
4933087 2003.1.2.24 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox_2 0.55 42.0 3.09e-01 90.9% 49.0%
5063311 4.1.1.364 ↗ beta barrels › SH3 › SH3 › SH3 › GatD_N 0.55 43.0 4.35e-01 100.0% 97.8%
3414817 2003.1.2.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain 0.55 43.0 2.70e-01 97.7% 41.0%
3958929 2003.1.2.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain 0.54 43.0 3.18e-01 97.7% 66.9%
5064098 2003.1.3.3 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Nucleotide-binding domain › Pyr_redox_2 0.54 42.0 2.74e-01 97.7% 35.8%
4200526 2003.1.2.24 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox_2 0.54 41.0 2.53e-01 97.7% 24.1%
5009862 2003.1.2.24 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox_2 0.53 41.0 2.54e-01 97.7% 24.9%
3670800 267.1.1.3 ↗ a+b complex topology › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Cation_ATPase 0.52 42.0 2.85e-01 100.0% 96.0%