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MG592429.1__AUR84071.1__NVP1047O_57__00057

Bact-Vir

MG592429.1__AUR84071.1__NVP1047O_57__00057

Identity

Accession:
MG592429 ↗
Kingdom:
phage

Quality

92.7 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Vibrio_phage_1.047.O._10N.286.55.F2

TaxID: 1881245

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 5-80
PDB
Domain cluster: rep: OM638088.1__UWJ04766.1__CUB19_gp55__00055__D9-90
CATH (3)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2lydA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.57 34.0 2.88e-01 94.7% 32.8%
4z32A01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.53 39.0 3.68e-01 98.7% 63.5%
3f42A00 3.30.1310.10 Alpha Beta › 2-Layer Sandwich › Ybab; Chain: A; › Nucleoid-associated protein YbaB-like domain 0.50 38.0 3.65e-01 84.2% 98.9%
ECOD (4)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3719681 1008.1.1.99 ↗ alpha bundles › BRCC36 C-terminal helical domain › BRCC36 C-terminal helical domain › BRCC36 C-terminal helical domain › JAB 0.61 49.0 3.49e-01 92.1% 86.7%
3597736 192.29.1.0 ↗ alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) 0.60 42.0 4.04e-01 73.7% 64.7%
3764740 109.4.1.1399 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Tuberin, DUF3384 0.53 39.0 2.65e-01 100.0% 18.5%
4998056 244.4.1.2 ↗ a+b two layers › FAD-linked reductases, C-terminal domain-like › Ni-Fe binding domain in nickel-iron hydrogenase large subunit › Ni-Fe binding domain in nickel-iron hydrogenase large subunit › NiFeSe_Hases 0.50 41.0 3.40e-01 96.1% 61.9%