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MG592431.1__AUR84131.1__NVP1049O_22__00022

Bact-Vir

MG592431.1__AUR84131.1__NVP1049O_22__00022

Identity

Accession:
MG592431 ↗
Kingdom:
phage

Quality

87.3 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Vibrio_phage_1.049.O._10N.286.54.B5

TaxID: 2070715

Cluster

View cluster (7 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-184
PDB
Domain cluster: representative
CATH (9)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1p32B00 3.10.280.10 Alpha Beta › Roll › Mitochondrial Matrix Protein; Chain A › Mitochondrial glycoprotein 0.66 31.0 3.29e-01 76.1% 48.0%
5z5dA02 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.60 36.0 3.54e-01 87.0% 53.8%
6fmeA03 2.20.220.10 Mainly Beta › Single Sheet › Glycosyl hydrolase fold › alpha-Amylases 0.56 22.0 3.47e-01 90.8% 98.4%
3bgaA04 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 23.0 2.89e-01 87.5% 61.9%
5mc9A02 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.54 32.0 3.27e-01 89.1% 56.6%
1s3rA03 3.40.30.40 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Perfringolysin 0.54 35.0 4.04e-01 100.0% 91.5%
6x0oA01 2.60.120.610 Mainly Beta › Sandwich › Jelly Rolls › arabinofuranosyltransferase like domain 0.53 33.0 3.53e-01 89.1% 69.4%
7szeB02 3.90.380.10 Alpha Beta › Alpha-Beta Complex › Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 › Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 0.52 35.0 3.56e-01 86.4% 66.8%
4ds2B00 3.10.110.10 Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme 0.51 38.0 4.13e-01 78.3% 96.8%
ECOD (11)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4105812 10.1.1.26 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Glyco_hydro_32C 0.66 34.0 3.90e-01 82.6% 65.5%
3572874 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.60 23.0 3.38e-01 71.2% 76.5%
4964630 331.3.1.11 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like › Polyketide_cyc2 0.58 36.0 4.01e-01 87.0% 78.3%
3368132 4099.1.1.4 ↗ a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like › CENP-O 0.54 36.0 4.26e-01 77.7% 100.0%
3977969 9.11.1.0 ↗ beta barrels › Lipocalins/Streptavidin › YdhA-like › YdhA-like 0.54 29.0 3.55e-01 88.6% 81.8%
3288513 10.1.1.40 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Arabino_trans_N 0.54 33.0 3.44e-01 89.1% 62.9%
3328470 4099.1.1.0 ↗ a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like 0.54 36.0 4.19e-01 77.2% 96.2%
3513335 10.1.1.83 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Menorin_C 0.53 40.0 3.81e-01 86.4% 66.0%
4024938 10.1.1.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.52 32.0 3.26e-01 79.3% 58.9%
4512955 246.2.1.1 ↗ a+b four layers › Carbon-nitrogen hydrolase-like › Metallo-dependent phosphatases › Metallo-dependent phosphatases › Metallophos 0.51 42.0 3.69e-01 87.5% 99.3%
4063751 10.1.1.40 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Arabino_trans_N 0.50 32.0 3.33e-01 89.1% 65.7%
D2 medium residues 185-312
PDB
Domain cluster: rep: QC4_scaffold_20_prodigal-single.1__X__X__00191__D160-264
CATH (3)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
6oqrA01 2.40.30.20 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.71 34.0 3.99e-01 70.3% 63.3%
4xpmB00 3.40.1840.10 Alpha Beta › 3-Layer(aba) Sandwich › Profilin-like › YNR034W-A-like 0.54 27.0 3.58e-01 96.9% 89.6%
2oaiA00 3.30.465.10 Alpha Beta › 2-Layer Sandwich › Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 › 0.50 31.0 3.81e-01 78.9% 98.8%
ECOD (3)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4157526 1.1.12.1 ↗ beta barrels › cradle loop barrel › RIFT-related › barrel domain in QueA-like proteins › Queuosine_synth 0.56 33.0 3.47e-01 78.9% 63.5%
3516364 391.1.1.7 ↗ few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › Fibronectin type I module › Fn1_2 0.55 20.0 3.10e-01 98.4% 95.0%
7164 217.2.1.1 ↗ a+b complex topology › FAD-binding domain-like › CorC/HlyC domain-like › CorC/HlyC domain-like › CorC_HlyC 0.50 31.0 3.81e-01 78.9% 98.8%