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MG592433.1__AUR84268.1__NVP1052A_39__00039

Bact-Vir

MG592433.1__AUR84268.1__NVP1052A_39__00039

Identity

Accession:
MG592433 ↗
Kingdom:
phage

Quality

81.9 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-61
PDB
Domain cluster: representative
CATH (58)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4gzrB00 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.75 51.0 4.68e-01 78.0% 54.5%
3q5dA02 1.20.58.420 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › AHSP 0.74 65.0 5.56e-01 100.0% 80.4%
3solA00 1.20.58.1630 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Chaperone lipoprotein PulS/OutS 0.72 60.0 5.29e-01 94.9% 67.0%
3whjA00 6.10.140.1710 Special › Helix non-globular › Helix Hairpins › 0.72 53.0 4.30e-01 79.7% 55.0%
4okvE00 6.10.140.1890 Special › Helix non-globular › Helix Hairpins › 0.71 52.0 5.05e-01 78.0% 72.3%
2yf4F00 1.10.3420.10 Mainly Alpha › Orthogonal Bundle › putative ntp pyrophosphohydrolase like fold › putative ntp pyrophosphohydrolase like domain 0.71 52.0 3.85e-01 79.7% 32.2%
2e62A01 6.10.140.420 Special › Helix non-globular › Helix Hairpins › 0.69 49.0 5.17e-01 78.0% 90.4%
7eu3E01 1.10.287.3510 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.67 49.0 4.33e-01 78.0% 55.2%
3vkgA15 1.10.8.1220 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.67 48.0 4.18e-01 76.3% 100.0%
4adnA01 1.20.1280.250 Mainly Alpha › Up-down Bundle › Monooxygenase › 0.67 60.0 5.33e-01 100.0% 78.8%
2k85A00 1.10.10.440 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › FF domain 0.67 58.0 5.64e-01 100.0% 90.8%
2hgkA01 1.20.1440.40 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › YqcC-like 0.67 47.0 3.85e-01 72.9% 100.0%
1hlvA02 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.67 55.0 5.51e-01 94.9% 98.3%
2rdcA00 1.10.287.800 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › protein ne1242 0.66 54.0 4.17e-01 89.8% 68.4%
3qwwA03 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.66 54.0 3.87e-01 94.9% 29.8%
2ewfA02 1.20.1270.310 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › 0.66 47.0 4.34e-01 78.0% 58.0%
2xubA05 6.10.140.1450 Special › Helix non-globular › Helix Hairpins › 0.66 48.0 4.06e-01 78.0% 62.5%
3a06B03 1.10.1740.10 Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif 0.65 45.0 3.95e-01 72.9% 51.1%
2f48A03 1.10.10.480 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Phosphofructokinase; domain 3 0.65 54.0 5.09e-01 100.0% 82.7%
6gwuD00 3.40.1050.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-carbonic Anhydrase; Chain A › Carbonic anhydrase 0.64 51.0 3.51e-01 93.2% 25.2%
2mpkA00 1.20.58.80 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit 0.64 46.0 4.36e-01 78.0% 67.6%
3tl4X02 1.10.10.2420 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.64 54.0 5.13e-01 100.0% 81.9%
4m0mA03 1.20.1270.430 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › 0.64 50.0 4.62e-01 88.1% 69.6%
3lphC00 6.10.140.630 Special › Helix non-globular › Helix Hairpins › 0.64 46.0 4.67e-01 78.0% 98.3%
3o6xA02 1.20.120.1560 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.64 46.0 3.50e-01 78.0% 38.5%
1hr5A00 1.20.5.420 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C 0.64 46.0 4.96e-01 79.7% 93.8%
1wkbA03 1.10.730.10 Mainly Alpha › Orthogonal Bundle › Isoleucyl-tRNA Synthetase; Domain 1 › Isoleucyl-tRNA Synthetase; Domain 1 0.64 56.0 4.46e-01 100.0% 58.7%
1aj3A00 1.20.58.60 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.63 53.0 4.56e-01 94.9% 87.8%
4hb1A00 1.20.5.420 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C 0.63 43.0 4.91e-01 91.5% 95.5%
2jrmA00 1.10.10.620 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › ribosome modulation factor like domain 0.63 42.0 4.21e-01 98.3% 68.3%
1iq0A03 1.10.730.10 Mainly Alpha › Orthogonal Bundle › Isoleucyl-tRNA Synthetase; Domain 1 › Isoleucyl-tRNA Synthetase; Domain 1 0.63 52.0 4.24e-01 94.9% 70.7%
1f1eA00 1.10.20.10 Mainly Alpha › Orthogonal Bundle › Histone, subunit A › Histone, subunit A 0.63 56.0 4.15e-01 100.0% 42.4%
3tp3A02 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.61 50.0 3.88e-01 98.3% 50.0%
3cwzB01 1.20.58.900 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › RUN domain 0.61 50.0 3.93e-01 100.0% 82.9%
2dnxA00 1.20.58.70 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.61 53.0 4.16e-01 100.0% 73.1%
3t5vA00 1.25.40.990 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.60 51.0 3.30e-01 100.0% 60.9%
4iloA00 1.10.287.1490 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.60 51.0 3.48e-01 100.0% 82.2%
2q00B00 1.20.120.330 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2 0.60 47.0 3.75e-01 86.4% 61.5%
1zpyA00 6.10.140.1960 Special › Helix non-globular › Helix Hairpins › 0.60 47.0 4.04e-01 84.7% 68.1%
1b0bA00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.59 50.0 3.92e-01 100.0% 62.4%
1m56C02 1.20.120.80 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Cytochrome c oxidase, subunit III, four-helix bundle 0.59 48.0 3.45e-01 96.6% 58.7%
1hr6B02 3.30.830.10 Alpha Beta › 2-Layer Sandwich › Cytochrome Bc1 Complex; Chain A, domain 1 › Metalloenzyme, LuxS/M16 peptidase-like 0.59 47.0 3.32e-01 93.2% 71.6%
2oxlA00 1.20.5.5260 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.59 49.0 4.91e-01 94.9% 96.8%
1dlwA00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.58 48.0 4.03e-01 100.0% 91.4%
3na7A00 1.10.287.1490 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.58 41.0 2.83e-01 78.0% 19.4%
2cmrA00 1.20.58.1860 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.58 49.0 3.52e-01 100.0% 87.5%
2cazE00 1.20.1440.200 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › Vps28 N-terminal domain 0.57 50.0 4.24e-01 100.0% 72.3%
4q5nA02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.57 49.0 4.02e-01 100.0% 52.7%
5mmjo00 1.10.287.10 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › S15/NS1, RNA-binding 0.56 47.0 4.36e-01 93.2% 90.7%
1wa8A00 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.56 43.0 3.56e-01 98.3% 48.5%
4in3B00 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.56 45.0 2.69e-01 100.0% 10.2%
1l8dA00 1.10.287.510 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.54 44.0 3.68e-01 89.8% 98.1%
6yz2A01 1.20.120.350 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Voltage-gated potassium channels. Chain C 0.54 46.0 3.72e-01 100.0% 70.8%
4doyA03 1.20.140.10 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 0.53 45.0 3.24e-01 96.6% 59.0%
4w4kA00 1.10.287.850 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HP0062-like domain 0.53 38.0 3.50e-01 78.0% 56.1%
7bvaA02 3.40.1190.10 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Mur-like, catalytic domain 0.53 46.0 3.12e-01 98.3% 94.2%
6ygiB01 1.10.4090.10 Mainly Alpha › Orthogonal Bundle › Hepatitis B viral capsid (hbcag) fold › Viral capsid, core domain supefamily, Hepatitis B virus 0.53 38.0 2.96e-01 78.0% 55.5%
1chuA03 1.20.58.100 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal domain 0.53 45.0 4.02e-01 100.0% 78.4%
ECOD (44)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3909706 192.29.1.0 alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) 0.76 54.0 4.84e-01 76.3% 57.6%
3402327 3755.3.1.324 alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › DUF725 0.75 54.0 3.89e-01 78.0% 78.8%
3409567 3755.3.1.324 alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › DUF725 0.74 54.0 3.91e-01 78.0% 49.7%
3589591 601.32.1.1 alpha bundles › Four-helical up-and-down bundle › FusB family N-terminal domain › FusB family N-terminal domain › EF-G-binding_N 0.72 65.0 5.84e-01 100.0% 83.7%
3579534 192.29.1.144 alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) › SK_channel 0.71 51.0 3.60e-01 78.0% 25.9%
3592587 3567.1.1.0 a+b duplicates or obligate multimers › MPER trimer › MPER trimer › MPER trimer 0.70 51.0 4.01e-01 78.0% 36.8%
3611289 3291.1.1.0 alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related 0.70 51.0 3.82e-01 78.0% 31.7%
3597993 5050.1.1.0 alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter 0.70 62.0 3.87e-01 100.0% 66.3%
3507677 101.35.1.25 alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › PF26215 0.69 55.0 4.89e-01 100.0% 59.1%
3516669 101.35.1.25 alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › PF26215 0.69 55.0 5.49e-01 94.9% 88.3%
3219646 3826.1.1.0 alpha bundles › Copper-sensitive operon repressor (CsoR) › Copper-sensitive operon repressor (CsoR) › Copper-sensitive operon repressor (CsoR) 0.68 50.0 5.17e-01 78.0% 96.4%
55139 604.3.1.1 alpha bundles › Spectrin repeat-like › BAG domain › BAG domain › BAG 0.68 55.0 4.36e-01 89.8% 73.0%
3414399 5086.1.1.106 alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › DUF725 0.68 49.0 3.55e-01 78.0% 27.6%
3879791 378.1.1.0 few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases 0.67 56.0 3.75e-01 93.2% 43.6%
3927709 192.29.1.0 alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) 0.67 59.0 4.41e-01 98.3% 63.4%
4879352 1030.1.1.1 alpha duplicates or obligate multimers › Crispr-associated protein Csm2 › Crispr-associated protein Csm2 › Crispr-associated protein Csm2 › Csm2_III-A 0.67 57.0 4.42e-01 98.3% 61.6%
None 0.66 55.0 3.56e-01 100.0% 72.9%
3579767 604.1.1.1 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › Spectrin 0.65 56.0 4.59e-01 96.6% 81.8%
4929363 604.12.1.0 alpha bundles › Spectrin repeat-like › MIT domain › MIT domain 0.65 47.0 3.82e-01 78.0% 40.9%
3192846 3755.3.1.0 alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.65 49.0 3.79e-01 79.7% 39.2%
5058630 632.22.1.0 alpha bundles › immunoglobulin/albumin-binding domain-like › Cell division protein EzrA repeats › Cell division protein EzrA repeats 0.65 44.0 4.31e-01 78.0% 64.6%
4951933 3567.1.1.190 a+b duplicates or obligate multimers › MPER trimer › MPER trimer › MPER trimer › HisKA 0.64 48.0 4.43e-01 79.7% 65.3%
3952621 101.35.1.0 alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX 0.64 54.0 5.23e-01 100.0% 89.9%
3671258 632.22.1.0 alpha bundles › immunoglobulin/albumin-binding domain-like › Cell division protein EzrA repeats › Cell division protein EzrA repeats 0.64 47.0 3.62e-01 79.7% 35.4%
3229095 632.22.1.0 alpha bundles › immunoglobulin/albumin-binding domain-like › Cell division protein EzrA repeats › Cell division protein EzrA repeats 0.64 47.0 3.94e-01 79.7% 46.0%
3996708 604.1.1.0 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.64 46.0 3.68e-01 78.0% 39.2%
3421325 148.1.3.0 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.63 52.0 4.82e-01 96.6% 82.5%
4557944 150.1.1.193 alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin › Ribophorin_II_C 0.63 47.0 4.09e-01 84.7% 51.6%
4024277 192.2.1.0 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin 0.62 45.0 4.19e-01 78.0% 69.3%
3820045 603.1.1.118 alpha bundles › STAT-like › t-snare proteins › t-snare proteins › DUF7610 0.61 55.0 4.86e-01 100.0% 90.6%
162404 603.1.1.6 alpha bundles › STAT-like › t-snare proteins › t-snare proteins › Syntaxin_2 0.61 53.0 4.16e-01 100.0% 73.1%
3185107 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.60 46.0 4.49e-01 93.2% 75.7%
3963355 605.1.1.1 alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › HisKA 0.59 43.0 4.05e-01 79.7% 65.3%
3073109 192.29.1.0 alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) 0.59 43.0 4.06e-01 79.7% 62.2%
3513582 192.8.1.36 alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain › M_domain 0.59 45.0 3.67e-01 84.7% 44.5%
3996707 604.1.1.0 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.59 47.0 4.02e-01 96.6% 82.7%
3497641 604.1.1.1 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › Spectrin 0.58 48.0 4.14e-01 96.6% 90.0%
1866769 219.1.1.68 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › RickCE_cat 0.57 42.0 2.85e-01 83.1% 96.5%
3610233 603.1.1.0 alpha bundles › STAT-like › t-snare proteins › t-snare proteins 0.56 47.0 3.83e-01 100.0% 72.8%
3283672 4121.1.1.1 a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like › CorA 0.56 45.0 3.02e-01 94.9% 35.9%
4961174 5069.1.1.2 alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Transmembrane di-heme cytochromes › Ni_hydr_CYTB 0.55 48.0 3.28e-01 100.0% 77.4%
4981748 632.11.1.0 alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like 0.55 45.0 4.15e-01 88.1% 72.0%
5065054 603.1.1.238 alpha bundles › STAT-like › t-snare proteins › t-snare proteins › Cpn60_TCP1 0.55 44.0 3.97e-01 100.0% 67.4%
3447449 630.1.1.1 a+b complex topology › RuBisCo LSMT C-terminal, substrate-binding domain › RuBisCo LSMT C-terminal, substrate-binding domain › RuBisCo LSMT C-terminal, substrate-binding domain › Rubis-subs-bind 0.52 39.0 3.06e-01 89.8% 95.6%