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MG592441.1__AUR84696.1__NVP1063O_029__00029

Bact-Vir

MG592441.1__AUR84696.1__NVP1063O_029__00029

Identity

Accession:
MG592441 ↗
Kingdom:
phage

Quality

91.2 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Vibrio_phage_1.063.O._10N.261.45.C7

TaxID: 1881308

Cluster

View cluster (8 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-109
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF13392.13 best HNH_3 27.5 2.50e-06 25.0% 52.2%
CATH (13)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2re3A02 2.30.270.10 Mainly Beta › Roll › duf1285 protein fold › duf1285 protein 0.59 32.0 3.85e-01 90.7% 80.0%
2id0A01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.59 31.0 3.49e-01 78.7% 65.4%
4gnxA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.58 30.0 3.06e-01 80.6% 49.1%
5lm7A02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.54 31.0 3.54e-01 79.6% 75.6%
2ymsC00 2.40.10.480 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.53 36.0 4.24e-01 75.0% 100.0%
2ymsA00 2.40.128.630 Mainly Beta › Beta Barrel › Lipocalin › 0.52 37.0 3.60e-01 75.0% 93.5%
1rypK00 3.60.20.10 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain 0.52 37.0 3.08e-01 75.9% 60.1%
2k52A00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.52 29.0 3.41e-01 84.3% 79.7%
2ymsB00 2.40.10.480 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.51 34.0 4.00e-01 71.3% 98.6%
2j8gA03 2.20.120.10 Mainly Beta › Single Sheet › Multimodular pneumococcal cell wall endolysin, domain 3 › Multimodular pneumococcal cell wall endolysin, domain 3 0.50 26.0 3.27e-01 87.0% 87.9%
3tssA02 2.40.50.110 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.50 30.0 3.61e-01 85.2% 91.5%
3k44B00 3.30.2450.30 Alpha Beta › 2-Layer Sandwich › Secreted effector protein pipB2 fold › 0.50 41.0 3.77e-01 88.0% 81.4%
2awnC02 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.50 33.0 3.70e-01 89.8% 93.6%
ECOD (11)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4526294 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.65 34.0 4.25e-01 84.3% 83.1%
4344077 375.8.1.0 ↗ few secondary structure elements › Rubredoxin-like › Zinc-binding domain of translation initiation factor 2 beta › Zinc-binding domain of translation initiation factor 2 beta 0.60 24.0 3.81e-01 90.7% 97.5%
4653384 2.1.1.18 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › TRAM 0.57 30.0 3.73e-01 77.8% 86.7%
4034031 4056.1.1.0 ↗ beta barrels › Barrel domain in upper collar protein › Barrel domain in upper collar protein › Barrel domain in upper collar protein 0.55 31.0 3.79e-01 76.9% 89.2%
4961197 331.1.1.0 ↗ a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like 0.55 27.0 3.15e-01 75.9% 65.7%
3839910 2.1.1.7 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › S1 0.54 30.0 3.68e-01 84.3% 90.5%
329360 3534.1.1.2 ↗ beta barrels › Pfam PF06938 (DUF1285) › Pfam PF06938 (DUF1285) › Pfam PF06938 (DUF1285) › DUF1285_C 0.52 31.0 3.21e-01 72.2% 61.4%
5043685 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.51 30.0 3.52e-01 96.3% 87.1%
3646319 6.1.1.25 ↗ beta duplicates or obligate multimers › beta-Trefoil › beta-Trefoil › beta-Trefoil › DUF569 0.51 36.0 3.11e-01 73.1% 76.6%
3742115 9.26.1.0 ↗ beta barrels › Lipocalins/Streptavidin 0.51 44.0 3.68e-01 95.4% 88.4%
3958770 10.1.1.40 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Arabino_trans_N 0.51 28.0 3.08e-01 76.9% 64.4%
D2 high residues 116-205
PDB
Domain cluster: rep: MW960032.1__QWY83295.1__X__00089__D170-241
CATH (16)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1gccA00 3.30.730.10 Alpha Beta › 2-Layer Sandwich › GCC-box Binding Domain › AP2/ERF domain 0.88 59.0 7.04e-01 88.9% 98.4%
7wq5A01 3.30.730.10 Alpha Beta › 2-Layer Sandwich › GCC-box Binding Domain › AP2/ERF domain 0.85 54.0 6.69e-01 83.3% 100.0%
3nyiA02 3.30.1180.10 Alpha Beta › 2-Layer Sandwich › Hypothetical Protein Tm841; Chain: A;domain 3 › 0.61 49.0 4.24e-01 85.6% 69.3%
3jr7A03 3.30.1180.10 Alpha Beta › 2-Layer Sandwich › Hypothetical Protein Tm841; Chain: A;domain 3 › 0.59 47.0 4.24e-01 85.6% 74.0%
3pl5A03 3.30.1180.10 Alpha Beta › 2-Layer Sandwich › Hypothetical Protein Tm841; Chain: A;domain 3 › 0.58 47.0 4.22e-01 85.6% 68.6%
6j9eJ00 3.30.160.560 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.58 39.0 4.38e-01 94.4% 93.9%
1pzxA03 3.30.1180.10 Alpha Beta › 2-Layer Sandwich › Hypothetical Protein Tm841; Chain: A;domain 3 › 0.57 45.0 4.11e-01 85.6% 68.0%
2dt8A02 3.30.1180.10 Alpha Beta › 2-Layer Sandwich › Hypothetical Protein Tm841; Chain: A;domain 3 › 0.57 45.0 4.02e-01 85.6% 71.5%
3fdjA03 3.30.1180.10 Alpha Beta › 2-Layer Sandwich › Hypothetical Protein Tm841; Chain: A;domain 3 › 0.57 45.0 3.99e-01 85.6% 71.9%
3gkeA01 2.102.10.10 Mainly Beta › 3-layer Sandwich › Rieske Iron-sulfur Protein › Rieske [2Fe-2S] iron-sulphur domain 0.56 33.0 2.95e-01 86.7% 40.0%
6cngA03 3.30.1180.10 Alpha Beta › 2-Layer Sandwich › Hypothetical Protein Tm841; Chain: A;domain 3 › 0.56 44.0 3.96e-01 85.6% 71.9%
6jwfA01 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.55 37.0 2.52e-01 70.0% 51.3%
7ewsB02 3.30.590.10 Alpha Beta › 2-Layer Sandwich › Creatine Kinase; Chain A, domain 2 › Glutamine synthetase/guanido kinase, catalytic domain 0.53 37.0 2.64e-01 72.2% 89.0%
5hy7B01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.51 43.0 2.86e-01 97.8% 77.2%
2ap1A01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.50 39.0 3.41e-01 84.4% 66.9%
4o5fA02 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.50 39.0 3.50e-01 84.4% 95.3%
ECOD (29)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3671921 252.2.1.0 ↗ a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like 0.93 56.0 7.20e-01 83.3% 100.0%
3331331 252.2.1.1 ↗ a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like › AP2 0.91 58.0 5.61e-01 88.9% 59.0%
3664743 252.2.1.0 ↗ a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like 0.89 63.0 6.22e-01 90.0% 69.5%
3335785 252.2.1.1 ↗ a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like › AP2 0.88 60.0 7.12e-01 95.6% 96.9%
3468885 252.2.1.1 ↗ a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like › AP2 0.87 64.0 6.80e-01 100.0% 85.0%
3661849 252.2.1.0 ↗ a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like 0.87 57.0 6.80e-01 94.4% 96.8%
3831192 252.2.1.1 ↗ a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like › AP2 0.86 60.0 6.24e-01 94.4% 76.5%
3380188 252.2.1.1 ↗ a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like › AP2 0.86 52.0 6.61e-01 82.2% 100.0%
3448800 252.2.1.1 ↗ a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like › AP2 0.83 63.0 5.88e-01 92.2% 65.5%
3327654 252.2.1.0 ↗ a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like 0.77 53.0 5.82e-01 87.8% 85.3%
3279949 3708.1.1.1 ↗ a+b three layers › ESX-1 secretion system protein eccB1 modular domains › ESX-1 secretion system protein eccB1 modular domains › ESX-1 secretion system protein eccB1 modular domains › T7SS_ESX1_EccB 0.66 36.0 3.80e-01 88.9% 58.7%
2324004 252.2.1.1 ↗ a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like › AP2 0.61 56.0 4.88e-01 100.0% 87.8%
4945379 301.13.1.0 ↗ a+b three layers › Bacillus chorismate mutase-like › DAK1/DegV C-terminal domain › DAK1/DegV C-terminal domain 0.60 48.0 4.28e-01 85.6% 74.4%
1937177 301.13.1.1 ↗ a+b three layers › Bacillus chorismate mutase-like › DAK1/DegV C-terminal domain › DAK1/DegV C-terminal domain › DegV 0.59 47.0 4.24e-01 85.6% 74.0%
4945438 301.13.1.0 ↗ a+b three layers › Bacillus chorismate mutase-like › DAK1/DegV C-terminal domain › DAK1/DegV C-terminal domain 0.59 47.0 4.18e-01 85.6% 71.5%
1937360 301.13.1.1 ↗ a+b three layers › Bacillus chorismate mutase-like › DAK1/DegV C-terminal domain › DAK1/DegV C-terminal domain › DegV 0.58 47.0 4.24e-01 85.6% 69.2%
3589392 301.13.1.1 ↗ a+b three layers › Bacillus chorismate mutase-like › DAK1/DegV C-terminal domain › DAK1/DegV C-terminal domain › DegV 0.58 46.0 4.11e-01 85.6% 72.3%
1937200 301.13.1.1 ↗ a+b three layers › Bacillus chorismate mutase-like › DAK1/DegV C-terminal domain › DAK1/DegV C-terminal domain › DegV 0.58 46.0 4.12e-01 85.6% 72.7%
3341257 2485.1.1.55 ↗ a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › FAF1 0.57 42.0 3.56e-01 80.0% 93.9%
3588328 301.13.1.1 ↗ a+b three layers › Bacillus chorismate mutase-like › DAK1/DegV C-terminal domain › DAK1/DegV C-terminal domain › DegV 0.57 45.0 4.03e-01 85.6% 72.3%
4857588 219.1.1.6 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Acetyltransf_2 0.57 39.0 2.86e-01 70.0% 52.9%
4461189 301.13.1.1 ↗ a+b three layers › Bacillus chorismate mutase-like › DAK1/DegV C-terminal domain › DAK1/DegV C-terminal domain › DegV 0.57 45.0 4.02e-01 85.6% 74.4%
3472026 220.1.1.27 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_RBD 0.56 37.0 3.40e-01 83.3% 50.0%
4329368 301.13.1.1 ↗ a+b three layers › Bacillus chorismate mutase-like › DAK1/DegV C-terminal domain › DAK1/DegV C-terminal domain › DegV 0.55 43.0 3.90e-01 85.6% 71.2%
3224339 5001.1.1.66 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Srg 0.52 45.0 3.22e-01 100.0% 62.7%
2983288 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.52 33.0 3.37e-01 95.6% 65.2%
3278725 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.51 42.0 2.93e-01 93.3% 74.0%
3418165 2484.1.1.110 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › MULE 0.50 39.0 3.92e-01 84.4% 86.7%
3937468 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.50 33.0 3.09e-01 81.1% 53.6%