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MG592441.1__AUR84736.1__NVP1063O_069__00069

Bact-Vir

MG592441.1__AUR84736.1__NVP1063O_069__00069

Identity

Accession:
MG592441 ↗
Kingdom:
phage

Quality

85.3 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Vibrio_phage_1.063.O._10N.261.45.C7

TaxID: 1881308

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-63
PDB
Domain cluster: representative
CATH (33)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3vpbE00 2.20.28.160 Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › 0.73 52.0 5.41e-01 91.9% 82.1%
3k2tA01 3.30.505.50 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › Sigma 54 modulation/S30EA ribosomal protein, C-terminal domain 0.72 47.0 5.29e-01 72.6% 91.3%
2xp1A01 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.67 44.0 3.89e-01 71.0% 44.2%
4j27A02 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.67 41.0 3.60e-01 100.0% 42.7%
5i7pA02 2.40.10.330 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.66 46.0 5.04e-01 100.0% 93.8%
1clwA00 2.160.20.20 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › 0.66 41.0 2.41e-01 72.6% 7.2%
7ct3A01 3.30.450.30 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic 0.66 58.0 4.73e-01 100.0% 64.1%
4xpmB00 3.40.1840.10 Alpha Beta › 3-Layer(aba) Sandwich › Profilin-like › YNR034W-A-like 0.66 55.0 5.44e-01 100.0% 88.1%
2ea9A01 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.65 58.0 5.05e-01 100.0% 88.3%
2gnxA02 3.30.450.240 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.65 57.0 4.77e-01 100.0% 62.4%
2lojA01 2.10.70.10 Mainly Beta › Ribbon › Complement Module; domain 1 › Complement Module, domain 1 0.64 37.0 4.31e-01 72.6% 87.2%
3prbA02 2.40.10.330 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.63 41.0 4.65e-01 100.0% 95.5%
1j3wC00 3.30.450.30 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic 0.62 54.0 4.27e-01 100.0% 57.1%
3ms6A00 3.30.450.30 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic 0.62 53.0 4.75e-01 100.0% 75.6%
5llwA01 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.61 53.0 4.72e-01 100.0% 90.2%
1x31C01 3.30.1360.120 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › Probable tRNA modification gtpase trme; domain 1 0.60 47.0 4.04e-01 100.0% 51.4%
2jraA01 2.10.70.10 Mainly Beta › Ribbon › Complement Module; domain 1 › Complement Module, domain 1 0.58 36.0 4.03e-01 71.0% 90.5%
3cz8A02 3.10.50.10 Alpha Beta › Roll › Chitinase A; domain 3 › 0.56 38.0 3.98e-01 83.9% 77.2%
3nhqA02 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.56 46.0 3.89e-01 100.0% 70.6%
2ffgA00 3.30.720.20 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › Protein of unknown function DUF1797 0.56 39.0 3.70e-01 75.8% 61.3%
1dhxA03 3.90.249.10 Alpha Beta › Alpha-Beta Complex › Hexon Major Viral Coat Protein; domain 3 › Hexon Major Viral Coat Protein, domain 3 0.56 48.0 3.26e-01 98.4% 70.9%
2dmwA01 3.30.450.50 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Longin domain 0.55 47.0 3.91e-01 100.0% 60.3%
1ifqB00 3.30.450.50 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Longin domain 0.54 46.0 3.75e-01 100.0% 57.8%
2jhnA01 3.30.310.20 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › DNA-3-methyladenine glycosylase AlkA, N-terminal domain 0.53 47.0 3.86e-01 100.0% 54.0%
1h8mA00 3.30.450.50 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Longin domain 0.53 44.0 3.54e-01 100.0% 57.9%
1rl2A01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.53 36.0 3.79e-01 88.7% 80.4%
2asfA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.52 38.0 3.21e-01 83.9% 94.4%
5x6vF00 3.30.450.190 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.52 45.0 3.71e-01 100.0% 58.5%
1icwB00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.52 36.0 3.56e-01 85.5% 69.7%
1yelA00 2.40.330.10 Mainly Beta › Beta Barrel › At1g16640 B3 domain › DNA-binding pseudobarrel domain 0.52 37.0 3.28e-01 100.0% 49.0%
4wj7D00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.51 45.0 3.60e-01 100.0% 78.9%
1vq8A01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.50 36.0 3.38e-01 88.7% 60.3%
6kghA02 3.30.450.330 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.50 34.0 2.64e-01 72.6% 29.9%
ECOD (52)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5021656 284.4.1.0 ↗ a+b two layers › FKBP-like › Archaeal FKBP insertion domain › Archaeal FKBP insertion domain 0.79 52.0 5.73e-01 100.0% 84.0%
4011873 244.1.1.11 ↗ a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C › SE 0.77 47.0 4.02e-01 100.0% 40.0%
3310464 375.1.1.69 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zinc_ribbon_12 0.76 57.0 6.17e-01 88.7% 100.0%
5046929 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.75 54.0 5.92e-01 93.5% 94.0%
5069785 284.4.1.0 ↗ a+b two layers › FKBP-like › Archaeal FKBP insertion domain › Archaeal FKBP insertion domain 0.75 52.0 4.08e-01 100.0% 36.0%
4956278 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.75 54.0 5.90e-01 91.9% 94.0%
4927153 375.1.1.63 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › LysW-like_globular 0.72 50.0 5.23e-01 88.7% 81.8%
3790377 223.2.1.49 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › C12orf66_like 0.71 64.0 4.80e-01 100.0% 65.3%
3578131 223.7.1.1 ↗ a+b three layers › Profilin-like › FLJ32549 C-terminal domain-like › FLJ32549 C-terminal domain-like › C12orf66_like 0.71 63.0 4.78e-01 100.0% 65.3%
1509075 244.1.1.8 ↗ a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C › Trp_halogenase 0.71 47.0 3.87e-01 100.0% 38.2%
3608781 244.1.1.11 ↗ a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C › SE 0.70 45.0 3.89e-01 100.0% 42.1%
2512670 244.1.1.11 ↗ a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C › SE 0.70 44.0 3.87e-01 100.0% 42.6%
5074674 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.69 62.0 4.71e-01 100.0% 47.1%
3600467 244.1.1.0 ↗ a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C 0.69 44.0 3.64e-01 100.0% 36.4%
5073412 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.68 53.0 5.44e-01 85.5% 93.3%
4219309 2003.1.3.1 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Nucleotide-binding domain › DAO 0.66 41.0 2.51e-01 100.0% 9.5%
5044837 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.66 54.0 5.46e-01 91.9% 93.3%
5046198 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.66 52.0 5.44e-01 90.3% 100.0%
4976643 223.2.1.5 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › Robl_LC7 0.66 59.0 4.65e-01 100.0% 57.6%
5045331 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.65 54.0 5.48e-01 91.9% 96.7%
3471405 223.7.1.1 ↗ a+b three layers › Profilin-like › FLJ32549 C-terminal domain-like › FLJ32549 C-terminal domain-like › C12orf66_like 0.65 57.0 4.53e-01 100.0% 61.5%
4976928 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.65 56.0 4.67e-01 100.0% 61.7%
5072544 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.65 53.0 5.44e-01 93.5% 98.3%
5053359 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.64 52.0 4.80e-01 91.9% 77.5%
5006875 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.63 55.0 4.73e-01 100.0% 62.2%
5046444 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.63 55.0 4.27e-01 100.0% 50.7%
3717004 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.63 47.0 4.66e-01 87.1% 76.9%
5045719 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.62 54.0 4.36e-01 100.0% 58.9%
4018561 223.2.1.10 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › Gtr1_RagA 0.62 54.0 4.17e-01 100.0% 68.3%
141273 223.2.1.16 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › LAMTOR5 0.62 53.0 4.73e-01 100.0% 74.7%
3492395 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.61 53.0 4.74e-01 100.0% 81.1%
3742968 223.5.1.0 ↗ a+b three layers › Profilin-like › YNR034W-A-like › YNR034W-A-like 0.61 51.0 4.78e-01 100.0% 76.0%
5008033 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.61 52.0 4.90e-01 100.0% 78.7%
5034034 244.1.1.16 ↗ a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C › GGR_cat 0.60 39.0 3.43e-01 100.0% 43.2%
3737235 12.1.1.0 ↗ beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain 0.60 40.0 3.95e-01 100.0% 64.6%
3639869 223.2.1.30 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › FNIP_N 0.60 52.0 3.95e-01 100.0% 46.1%
5038289 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.59 51.0 4.07e-01 100.0% 54.1%
3250477 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.59 50.0 4.15e-01 100.0% 58.0%
184673 6029.1.1.1 ↗ beta meanders › Hemin uptake protein hemP › Hemin uptake protein hemP › Hemin uptake protein hemP › hemP 0.58 36.0 3.55e-01 71.0% 56.7%
3217385 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.58 49.0 4.51e-01 100.0% 82.4%
5008603 223.1.1.2 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS 0.57 47.0 3.52e-01 100.0% 51.1%
4950268 284.4.1.0 ↗ a+b two layers › FKBP-like › Archaeal FKBP insertion domain › Archaeal FKBP insertion domain 0.57 39.0 3.98e-01 100.0% 75.0%
4123274 284.4.1.0 ↗ a+b two layers › FKBP-like › Archaeal FKBP insertion domain › Archaeal FKBP insertion domain 0.57 41.0 4.26e-01 100.0% 89.1%
5051542 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.56 47.0 3.45e-01 100.0% 37.4%
4031136 6043.1.1.3 ↗ a+b two layers › yfeY-like › yfeY-like › yfeY-like › CAP_assoc_N 0.56 43.0 4.37e-01 100.0% 90.0%
3927525 2484.1.1.145 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_1_7 0.55 41.0 2.85e-01 100.0% 20.8%
4032577 2002.1.1.52 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Peptidase_U32 0.55 44.0 2.85e-01 100.0% 18.7%
3766835 386.1.1.321 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-C2H2, PF30355 0.54 32.0 3.05e-01 91.9% 45.9%
3212411 207.1.1.81 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FTH 0.53 45.0 3.12e-01 98.4% 34.5%
5046010 223.2.1.5 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › Robl_LC7 0.53 44.0 3.93e-01 100.0% 67.0%
3392283 11.1.1.97 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › I-set 0.53 45.0 3.77e-01 100.0% 53.9%
3209344 327.11.2.0 ↗ a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) 0.52 40.0 3.13e-01 100.0% 37.9%