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MG592441.1__AUR84840.1__NVP1063O_173__00173

Bact-Vir

MG592441.1__AUR84840.1__NVP1063O_173__00173

Identity

Accession:
MG592441 ↗
Kingdom:
phage

Quality

83.0 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Vibrio_phage_1.063.O._10N.261.45.C7

TaxID: 1881308

Cluster

View cluster (2 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 4-76
PDB
Domain cluster: representative
CATH (21)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4mtnA01 3.30.1480.10 Alpha Beta › 2-Layer Sandwich › N Utilization Substance Protein A; Chain:P; domain 4 › NusA, N-terminal domain 0.68 32.0 2.91e-01 95.9% 34.7%
2eshA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.57 47.0 4.04e-01 90.4% 95.6%
3hluA00 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.56 40.0 4.10e-01 76.7% 84.9%
4gaaA01 2.60.40.1730 Mainly Beta › Sandwich › Immunoglobulin-like › tricorn interacting facor f3 domain 0.56 36.0 2.70e-01 71.2% 24.9%
1bm9A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.56 49.0 4.15e-01 97.3% 83.3%
2dqlA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.55 42.0 3.66e-01 83.6% 76.5%
3tfiA00 3.30.1360.120 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › Probable tRNA modification gtpase trme; domain 1 0.54 38.0 2.48e-01 76.7% 19.8%
1pc6A00 1.10.3790.10 Mainly Alpha › Orthogonal Bundle › NinB fold › NinB 0.53 37.0 2.98e-01 84.9% 37.6%
2g0iA00 3.30.70.1490 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Cysteine protease Prp 0.53 41.0 3.65e-01 86.3% 78.4%
4djhA01 1.20.1070.10 Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins 0.53 48.0 3.16e-01 100.0% 41.1%
1l3aA00 2.30.31.10 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A 0.52 41.0 3.30e-01 90.4% 93.4%
2l9pA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.52 37.0 2.97e-01 76.7% 81.1%
7o4xA01 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.52 35.0 3.26e-01 71.2% 60.6%
1h0hB01 3.30.70.20 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.52 38.0 3.13e-01 82.2% 72.7%
1j4wA01 3.30.1370.10 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › K Homology domain, type 1 0.51 35.0 3.57e-01 72.6% 91.9%
3r0aA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.51 46.0 3.90e-01 100.0% 75.0%
3upuA03 2.30.30.780 Mainly Beta › Roll › SH3 type barrels. › 0.51 38.0 3.17e-01 79.5% 53.4%
2p92A00 3.30.70.1490 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Cysteine protease Prp 0.51 41.0 3.80e-01 89.0% 78.9%
2giaB00 2.30.31.40 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › 0.51 41.0 3.31e-01 90.4% 97.3%
5dymA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.51 43.0 3.91e-01 93.2% 93.8%
2anrA02 3.30.1370.10 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › K Homology domain, type 1 0.50 36.0 3.66e-01 78.1% 86.7%
ECOD (52)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3921728 192.2.1.0 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin 0.68 46.0 3.96e-01 97.3% 44.3%
4029392 375.1.1.179 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TFIIE_alpha 0.62 44.0 3.23e-01 74.0% 50.3%
3576004 859.1.1.3 ↗ a+b two layers › The spindle assembly checkpoint protein mad2 › The spindle assembly checkpoint protein mad2 › The spindle assembly checkpoint protein mad2 › ATG101 0.61 54.0 3.84e-01 98.6% 37.7%
3236563 3567.1.1.0 ↗ a+b duplicates or obligate multimers › MPER trimer › MPER trimer › MPER trimer 0.60 48.0 3.96e-01 97.3% 49.6%
4970576 375.1.1.179 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TFIIE_alpha 0.59 45.0 3.25e-01 98.6% 31.7%
4987009 3837.1.1.1 ↗ alpha bundles › Uncharacterized conserved protein Dip1984 › Uncharacterized conserved protein Dip1984 › Uncharacterized conserved protein Dip1984 › DUF6847 0.59 46.0 3.54e-01 97.3% 40.0%
2391543 101.1.2.48 ↗ alpha arrays › HTH › HTH › winged helix domain › PadR 0.58 50.0 3.65e-01 94.5% 96.4%
4297859 314.1.1.2 ↗ a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › tRNA-synt_2b 0.57 40.0 2.66e-01 75.3% 17.1%
5073431 1075.1.1.0 ↗ alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › ABCG5/ABCG8 transmembrane domain 0.56 52.0 3.08e-01 100.0% 41.1%
3883169 5001.1.1.3 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_2 0.56 48.0 3.28e-01 95.9% 53.0%
4344487 375.1.1.179 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TFIIE_alpha 0.56 42.0 3.15e-01 98.6% 34.5%
4985036 101.1.2.31 ↗ alpha arrays › HTH › HTH › winged helix domain › TFIIE_alpha 0.56 42.0 3.12e-01 98.6% 33.5%
5033035 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.56 51.0 4.31e-01 100.0% 89.8%
4027654 327.11.2.1 ↗ a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_1 0.56 40.0 3.98e-01 75.3% 90.7%
5001284 101.1.2.48 ↗ alpha arrays › HTH › HTH › winged helix domain › PadR 0.55 49.0 3.78e-01 97.3% 58.7%
164542 101.1.2.48 ↗ alpha arrays › HTH › HTH › winged helix domain › PadR 0.55 42.0 3.66e-01 83.6% 76.5%
4959599 101.1.2.48 ↗ alpha arrays › HTH › HTH › winged helix domain › PadR 0.54 47.0 4.03e-01 94.5% 82.5%
3306699 101.1.2.517 ↗ alpha arrays › HTH › HTH › winged helix domain › RNA_pol_Rpc82, HTH_9, POLR3C_WHD 0.54 50.0 3.10e-01 100.0% 28.4%
3978824 223.8.1.2 ↗ a+b three layers › Profilin-like › LapD periplasmic domain › LapD periplasmic domain › CHASE8 0.54 48.0 3.60e-01 97.3% 78.2%
3586391 3937.1.1.2 ↗ alpha bundles › Connexin 26 › Connexin 26 › Connexin 26 › Innexin 0.54 45.0 2.89e-01 89.0% 64.8%
4943395 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.54 50.0 3.71e-01 100.0% 71.2%
5035395 101.1.2.31 ↗ alpha arrays › HTH › HTH › winged helix domain › TFIIE_alpha 0.54 49.0 3.69e-01 100.0% 70.0%
4998735 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.53 40.0 3.34e-01 82.2% 77.8%
5082704 375.1.1.179 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TFIIE_alpha 0.53 49.0 3.53e-01 100.0% 63.1%
3859768 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.53 45.0 3.40e-01 93.2% 79.4%
4507638 101.1.2.31 ↗ alpha arrays › HTH › HTH › winged helix domain › TFIIE_alpha 0.53 49.0 3.68e-01 100.0% 70.9%
3419370 6063.1.1.0 ↗ alpha duplicates or obligate multimers › BNIP3 transmembrane domain › BNIP3 transmembrane domain › BNIP3 transmembrane domain 0.53 32.0 3.63e-01 72.6% 88.0%
3798829 5001.1.1.1 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 0.53 48.0 3.34e-01 100.0% 53.8%
5003912 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.52 39.0 3.12e-01 82.2% 76.2%
3392597 220.1.1.66 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › SOS1_NGEF_PH 0.52 43.0 3.51e-01 90.4% 83.0%
3232782 101.1.9.0 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain 0.52 37.0 3.83e-01 78.1% 97.1%
4930596 101.1.2.31 ↗ alpha arrays › HTH › HTH › winged helix domain › TFIIE_alpha 0.52 48.0 3.58e-01 100.0% 69.4%
5054122 101.1.2.31 ↗ alpha arrays › HTH › HTH › winged helix domain › TFIIE_alpha 0.52 47.0 3.61e-01 100.0% 73.8%
3566463 220.1.1.66 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › SOS1_NGEF_PH 0.52 43.0 3.27e-01 91.8% 79.4%
4183868 878.1.1.1 ↗ a+b two layers › Hypothetical protein MTH677 › Hypothetical protein MTH677 › Hypothetical protein MTH677 › DUF3194 0.51 43.0 4.17e-01 91.8% 82.3%
3858692 4081.1.1.7 ↗ beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Ribophorin_I 0.51 35.0 2.65e-01 72.6% 30.3%
4978596 101.1.2.48 ↗ alpha arrays › HTH › HTH › winged helix domain › PadR 0.51 45.0 3.83e-01 100.0% 80.8%
4527101 101.1.2.31 ↗ alpha arrays › HTH › HTH › winged helix domain › TFIIE_alpha 0.51 46.0 3.55e-01 98.6% 62.5%
3680858 192.2.1.0 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin 0.51 47.0 3.57e-01 100.0% 72.1%
5031648 101.1.2.31 ↗ alpha arrays › HTH › HTH › winged helix domain › TFIIE_alpha 0.51 46.0 3.55e-01 100.0% 62.4%
4456198 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.51 46.0 3.44e-01 100.0% 70.8%
4980707 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.51 41.0 3.64e-01 86.3% 73.3%
5038341 304.39.1.1 ↗ a+b two layers › Alpha-beta plaits › Mechanosensitive channel protein MscS (YggB), C-terminal domain › Mechanosensitive channel protein MscS (YggB), C-terminal domain › MS_channel_3rd 0.51 35.0 3.16e-01 71.2% 68.6%
3730463 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.51 38.0 3.23e-01 82.2% 85.4%
4478999 101.1.2.31 ↗ alpha arrays › HTH › HTH › winged helix domain › TFIIE_alpha 0.51 45.0 3.34e-01 100.0% 39.9%
3627957 4956.1.1.0 ↗ a+b two layers › ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit 0.51 35.0 3.42e-01 71.2% 76.2%
5011468 101.1.2.31 ↗ alpha arrays › HTH › HTH › winged helix domain › TFIIE_alpha 0.51 45.0 3.76e-01 97.3% 80.8%
5016748 101.1.2.30 ↗ alpha arrays › HTH › HTH › winged helix domain › TrmB 0.51 44.0 3.72e-01 95.9% 82.5%
4965874 101.1.2.30 ↗ alpha arrays › HTH › HTH › winged helix domain › TrmB 0.51 47.0 3.76e-01 100.0% 75.4%
5023262 327.11.2.82 ↗ a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › PF27275 0.51 40.0 4.25e-01 86.3% 100.0%
5075111 101.1.2.31 ↗ alpha arrays › HTH › HTH › winged helix domain › TFIIE_alpha 0.51 46.0 3.66e-01 100.0% 74.3%
None — 0.50 42.0 3.92e-01 91.8% 85.6%
D2 medium residues 79-110
PDB
Domain cluster: representative
CATH (1)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3l0iA01 1.20.120.1520 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.86 70.0 4.32e-01 96.9% 17.0%
ECOD (1)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
None — 0.79 65.0 4.42e-01 90.6% 28.2%