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MG592444.1__AUR85046.1__NVP1067O_34__00034

Bact-Vir

MG592444.1__AUR85046.1__NVP1067O_34__00034

Identity

Accession:
MG592444 ↗
Kingdom:
phage

Quality

93.9 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-47
PDB
CATH (40)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3bt7A02 2.40.50.1070 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.76 47.0 3.24e-01 100.0% 20.0%
2lqkA00 2.40.10.170 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.75 56.0 4.97e-01 100.0% 55.7%
2eyqA05 2.40.10.170 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.71 53.0 4.94e-01 100.0% 64.4%
1u2eA00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.69 50.0 3.08e-01 76.1% 23.4%
3wa7A00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.68 49.0 2.83e-01 76.1% 9.4%
1pjxA00 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.66 44.0 2.72e-01 71.7% 11.5%
1mtpA02 2.30.39.10 Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 0.61 48.0 3.97e-01 93.5% 98.9%
4c89C00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.61 43.0 2.60e-01 73.9% 20.1%
1l1dA00 2.170.150.20 Mainly Beta › Beta Complex › Metal Binding Protein, Guanine Nucleotide Exchange Factor; Chain A › Peptide methionine sulfoxide reductase. 0.61 51.0 3.66e-01 100.0% 40.3%
2k75A01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.61 46.0 3.74e-01 91.3% 48.5%
3p5jB01 2.20.25.530 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.60 45.0 3.96e-01 100.0% 54.1%
1krlA00 6.20.50.130 Special › Other non-globular › N-terminal domain of TfIIb › 0.60 40.0 4.08e-01 73.9% 70.5%
1orvA02 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.59 40.0 2.52e-01 71.7% 26.4%
3vwoA02 2.10.70.40 Mainly Beta › Ribbon › Complement Module; domain 1 › peptidoglycan hydrolase 0.59 39.0 3.85e-01 82.6% 62.7%
7oufB01 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.58 38.0 2.77e-01 73.9% 20.8%
4bqqB02 3.90.1750.20 Alpha Beta › Alpha-Beta Complex › Hect, E3 ligase catalytic domain fold › Putative Large Serine Recombinase; Chain B, Domain 2 0.58 47.0 3.10e-01 91.3% 71.6%
3hi2B00 3.30.2310.40 Alpha Beta › 2-Layer Sandwich › YaeB-like fold › 0.57 46.0 3.85e-01 100.0% 76.3%
3o27B00 2.10.260.10 Mainly Beta › Ribbon › Pemi-like Protein 1; Chain: D › 0.57 37.0 3.49e-01 91.3% 50.9%
2eixA01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.56 45.0 3.53e-01 93.5% 54.7%
4oo1I01 2.40.50.880 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.56 43.0 3.71e-01 84.8% 73.3%
4e2xA01 6.20.50.110 Special › Other non-globular › N-terminal domain of TfIIb › Methyltransferase, zinc-binding domain 0.56 47.0 4.52e-01 97.8% 100.0%
2rajA02 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.55 42.0 3.23e-01 91.3% 72.2%
2lt1A00 2.40.10.170 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.55 43.0 3.88e-01 100.0% 61.3%
2zihC00 1.10.3630.10 Mainly Alpha › Orthogonal Bundle › yeast vps74-n-term truncation variant fold › yeast vps74-n-term truncation variant domain like 0.54 41.0 2.60e-01 87.0% 51.6%
2kvtA00 3.30.730.30 Alpha Beta › 2-Layer Sandwich › GCC-box Binding Domain › YaiA protein 0.54 37.0 3.34e-01 76.1% 49.3%
3vpbE00 2.20.28.160 Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › 0.54 44.0 4.17e-01 100.0% 78.6%
1a94A00 2.40.70.10 Mainly Beta › Beta Barrel › Cathepsin D, subunit A; domain 1 › Acid Proteases 0.54 43.0 3.46e-01 95.7% 63.6%
2bz0A00 3.40.50.10990 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › GTP cyclohydrolase II 0.53 36.0 2.57e-01 100.0% 19.6%
4pifA00 2.100.10.30 Mainly Beta › Aligned Prism › Vitelline Membrane Outer Layer Protein I, subunit A › Jacalin-like lectin domain 0.53 41.0 3.02e-01 89.1% 86.3%
3tqfA00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.53 44.0 3.09e-01 100.0% 52.1%
1ln1A00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.53 42.0 2.87e-01 100.0% 63.1%
3op1A02 2.40.30.30 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Riboflavin kinase-like 0.52 40.0 3.13e-01 89.1% 47.7%
4mtlA00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.52 46.0 2.95e-01 100.0% 30.3%
3j7aZ00 3.30.1230.20 Alpha Beta › 2-Layer Sandwich › Hypothetical Cytosolic Protein; Chain: A; › Ribosomal protein S21 0.51 40.0 3.65e-01 95.7% 79.2%
1u0kA01 3.10.310.10 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 0.51 38.0 2.90e-01 89.1% 81.8%
2v4jB03 3.30.70.20 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.51 41.0 3.76e-01 93.5% 96.9%
4ok4A02 2.70.98.70 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.51 38.0 2.43e-01 100.0% 29.9%
4i14A02 3.40.50.10990 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › GTP cyclohydrolase II 0.50 33.0 2.57e-01 71.7% 24.6%
2jheA02 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.50 38.0 3.08e-01 91.3% 72.2%
3u5wA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.50 36.0 2.85e-01 87.0% 62.7%
ECOD (68)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4025860 4050.1.1.1 few secondary structure elements › beta-barrel domain in Capz › beta-barrel domain in Capz › beta-barrel domain in Capz › F_actin_cap_B 0.82 57.0 5.78e-01 100.0% 75.6%
3461850 150.1.1.88 alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin › PHD_Oberon 0.79 67.0 4.61e-01 100.0% 30.3%
5069323 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.76 53.0 5.16e-01 100.0% 68.0%
4946781 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.75 56.0 5.71e-01 100.0% 86.7%
3343242 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.74 52.0 5.49e-01 100.0% 85.0%
3447043 386.1.1.0 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.74 50.0 5.57e-01 71.7% 100.0%
4111189 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.73 49.0 4.49e-01 100.0% 53.3%
3664655 601.28.1.2 alpha bundles › Four-helical up-and-down bundle › VPS28 C-terminal domain-like › VPS28 C-terminal domain-like › PHD_Oberon 0.70 61.0 4.28e-01 100.0% 33.3%
3651001 376.1.1.101 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › PHD_Oberon 0.69 58.0 4.10e-01 100.0% 30.3%
5082246 243.3.1.0 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.68 47.0 4.39e-01 100.0% 56.7%
5041400 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.67 53.0 5.38e-01 100.0% 95.6%
3937854 214.1.1.1 a+b two layers › SH2 › SH2 › SH2 › SH2 0.67 42.0 3.28e-01 73.9% 30.0%
5039554 109.2.1.12 alpha superhelices › Repetitive alpha hairpins › alpha/alpha toroid › alpha/alpha toroid › Glyco_hydro_65m 0.66 56.0 3.07e-01 100.0% 19.0%
3740693 101.1.21.1 alpha arrays › HTH › HTH › HTH in T7 RNA polymerase › RPOL_N 0.66 45.0 2.49e-01 71.7% 7.8%
3334359 221.4.1.1 a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX 0.65 53.0 3.69e-01 100.0% 72.8%
4944647 386.1.1.0 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.65 43.0 4.38e-01 73.9% 68.9%
3941356 214.1.1.1 a+b two layers › SH2 › SH2 › SH2 › SH2 0.65 41.0 3.10e-01 73.9% 24.2%
4997007 376.1.3.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger 0.65 52.0 4.62e-01 95.7% 61.4%
5065093 221.4.1.1 a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX 0.65 52.0 3.60e-01 100.0% 71.9%
3632684 101.1.21.0 alpha arrays › HTH › HTH › HTH in T7 RNA polymerase 0.64 44.0 2.55e-01 73.9% 54.5%
3891429 2003.1.5.134 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › DUF4470+DUF4471 0.64 47.0 2.83e-01 80.4% 58.1%
3574976 4184.1.1.2 beta barrels › MFPT repeat › MFPT repeat › MFPT repeat › MFP2b 0.64 50.0 4.77e-01 87.0% 76.4%
3508353 2484.1.1.1 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › HSP70 0.62 40.0 2.57e-01 80.4% 12.4%
4932673 375.1.1.26 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Rpr2 0.62 46.0 3.88e-01 100.0% 44.4%
4051921 221.4.1.1 a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX 0.61 49.0 3.42e-01 100.0% 67.5%
3818481 221.4.1.1 a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX 0.61 47.0 3.22e-01 100.0% 61.6%
4051570 2003.1.5.46 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › MTS 0.61 41.0 2.77e-01 71.7% 30.0%
3621613 3338.2.1.0 a+b two layers › Fragilysin-3 prodomain-like › Type II secretion chaperone CpaB › Type II secretion chaperone CpaB 0.59 41.0 3.20e-01 73.9% 32.2%
5046254 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.59 44.0 4.43e-01 100.0% 91.1%
3724091 101.1.21.1 alpha arrays › HTH › HTH › HTH in T7 RNA polymerase › RPOL_N 0.59 46.0 2.89e-01 87.0% 50.2%
3936609 5.1.3.176 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › APEH_N 0.58 40.0 2.37e-01 71.7% 17.2%
4991056 375.1.1.63 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › LysW-like_globular 0.58 51.0 4.84e-01 100.0% 81.8%
4779411 243.3.1.6 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › Monellin 0.58 39.0 4.01e-01 71.7% 70.5%
4962280 375.1.1.347 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › PF26237 0.58 44.0 4.47e-01 100.0% 91.1%
3265494 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.58 43.0 4.37e-01 97.8% 95.6%
3998750 206.1.1.1 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.57 46.0 2.83e-01 100.0% 13.2%
2125846 206.1.1.70 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase, ABC1 0.57 46.0 2.91e-01 100.0% 31.6%
3195871 101.1.21.0 alpha arrays › HTH › HTH › HTH in T7 RNA polymerase 0.56 45.0 2.49e-01 89.1% 21.7%
3231216 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.56 40.0 3.99e-01 100.0% 78.0%
3226827 4.1.1.133 beta barrels › SH3 › SH3 › SH3 › SMN_YG-box 0.56 39.0 3.04e-01 71.7% 34.3%
3690788 101.1.21.1 alpha arrays › HTH › HTH › HTH in T7 RNA polymerase › RPOL_N 0.56 45.0 2.78e-01 89.1% 57.0%
3740914 5.1.4.80 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Utp8_b_propeller 0.55 38.0 2.30e-01 71.7% 9.4%
3077669 4.1.1.3 beta barrels › SH3 › SH3 › SH3 › KOW 0.55 40.0 3.56e-01 78.3% 84.8%
5049605 330.1.1.0 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.55 39.0 3.74e-01 76.1% 63.6%
4946710 876.1.1.0 a+b complex topology › ParB/Sulfiredoxin › ParB/Sulfiredoxin › ParB/Sulfiredoxin 0.55 36.0 3.12e-01 100.0% 40.0%
5047479 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.54 42.0 3.46e-01 100.0% 51.8%
3980680 3308.2.1.2 beta duplicates or obligate multimers › periplasmic lysozyme inhibitor of I-type lysozyme-like › XAC2610 protein › XAC2610 protein › PF27031 0.54 46.0 3.19e-01 100.0% 34.1%
3650158 221.4.1.0 a+b two layers › beta-Grasp › Nudix › Nudix 0.54 38.0 3.24e-01 87.0% 47.6%
5034313 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.54 36.0 3.78e-01 100.0% 91.4%
3949537 243.3.1.29 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › DUF4333 0.54 43.0 3.71e-01 89.1% 70.7%
5071179 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.54 38.0 3.72e-01 100.0% 66.7%
4019993 101.1.21.1 alpha arrays › HTH › HTH › HTH in T7 RNA polymerase › RPOL_N 0.54 43.0 2.72e-01 91.3% 62.2%
3232550 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.53 43.0 3.65e-01 100.0% 51.8%
3228051 295.1.1.3 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › PurA 0.53 36.0 3.35e-01 71.7% 52.3%
4952918 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.53 39.0 3.25e-01 80.4% 42.2%
3972645 1.1.7.7 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › FAD_binding_6 0.53 40.0 2.98e-01 89.1% 42.2%
5049449 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.52 41.0 4.08e-01 100.0% 90.0%
4459946 223.1.1.6 a+b three layers › Profilin-like › sensor domains › sensor domains › dCache_1 0.52 42.0 2.72e-01 100.0% 90.2%
3986836 375.1.1.253 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-IS66 0.52 42.0 4.05e-01 95.7% 87.3%
4981961 101.1.2.819 alpha arrays › HTH › HTH › winged helix domain › PF27231 0.52 39.0 2.81e-01 89.1% 42.5%
3169674 101.1.21.1 alpha arrays › HTH › HTH › HTH in T7 RNA polymerase › RPOL_N 0.52 41.0 2.61e-01 91.3% 46.5%
5044388 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.51 44.0 4.32e-01 100.0% 94.0%
4930970 375.1.1.338 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › DUF7479 0.51 36.0 3.50e-01 73.9% 72.7%
4998404 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.51 39.0 3.73e-01 93.5% 88.3%
5001969 375.1.1.338 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › DUF7479 0.50 36.0 3.26e-01 100.0% 50.0%
3259570 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.50 38.0 2.37e-01 93.5% 49.4%
5045717 286.1.1.2 a+b complex topology › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › PhzC-PhzF 0.50 38.0 2.89e-01 89.1% 86.9%
5056462 4312.1.1.0 a+b two layers › RelE-like › RelE-like › RelE-like 0.50 38.0 3.23e-01 91.3% 81.1%