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MG592449.1__AUR85348.1__NVP1072O_31__00031
Bact-VirMG592449.1__AUR85348.1__NVP1072O_31__00031
Identity
- Accession:
- MG592449 ↗
- Kingdom:
- phage
Quality
59.3
mean pLDDT
Taxonomy
TaxID: 1881456
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 173-294
Domain cluster:
representative
CATH (21)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3o3mB01 | 1.20.1270.370 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › | 0.69 | 41.0 | 4.41e-01 | 76.2% | 68.9% |
| 1gvnA00 | 1.10.8.130 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.63 | 44.0 | 5.05e-01 | 78.7% | 98.9% |
| 2icwG01 | 1.20.120.390 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Hla class ii histocompatibility antigen, dr alpha chain. Chain D, domain 1 | 0.63 | 49.0 | 4.88e-01 | 88.5% | 79.8% |
| 4f0uA00 | 1.10.490.20 | Mainly Alpha › Orthogonal Bundle › Globin-like › Phycocyanins | 0.63 | 38.0 | 3.45e-01 | 70.5% | 45.6% |
| 2y39A00 | 1.20.120.1490 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › | 0.61 | 40.0 | 4.26e-01 | 71.3% | 73.6% |
| 2yfaA02 | 1.20.1440.210 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › | 0.60 | 37.0 | 3.86e-01 | 75.4% | 64.7% |
| 3qa8A04 | 1.20.1270.250 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › | 0.60 | 43.0 | 3.53e-01 | 74.6% | 82.4% |
| 6yxr101 | 1.10.3460.10 | Mainly Alpha › Orthogonal Bundle › Chlorophyll a-b binding protein › Chlorophyll a/b binding protein domain | 0.60 | 37.0 | 3.23e-01 | 98.4% | 42.0% |
| 3rrkA02 | 1.20.1460.20 | Mainly Alpha › Up-down Bundle › subunit c (vma5p) of the yeast v-atpase, domain 2 › | 0.60 | 46.0 | 4.31e-01 | 82.8% | 76.1% |
| 4x28C03 | 1.20.140.10 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 | 0.59 | 42.0 | 4.00e-01 | 73.8% | 72.7% |
| 2p9xA00 | 1.10.1200.200 | Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › Protein of unknown function DUF3227 | 0.58 | 31.0 | 3.47e-01 | 86.9% | 64.3% |
| 3t6gB00 | 1.20.120.230 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like | 0.57 | 43.0 | 4.19e-01 | 78.7% | 77.6% |
| 3ljbA00 | 1.20.120.1240 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Dynamin, middle domain | 0.56 | 40.0 | 3.37e-01 | 74.6% | 45.2% |
| 1i4dA00 | 1.20.1270.60 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain | 0.55 | 40.0 | 3.45e-01 | 74.6% | 79.8% |
| 4wjg400 | 1.20.1260.80 | Mainly Alpha › Up-down Bundle › Ferritin › | 0.55 | 43.0 | 3.44e-01 | 84.4% | 65.1% |
| 8sbeA02 | 1.20.1250.20 | Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › MFS general substrate transporter like domains | 0.54 | 41.0 | 3.65e-01 | 82.8% | 91.4% |
| 6o0aA01 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.52 | 31.0 | 2.96e-01 | 74.6% | 46.3% |
| 4yjwA00 | 1.20.120.930 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Uncharacterised protein PF12889, N-terminal DUF3829 | 0.51 | 40.0 | 3.71e-01 | 82.0% | 83.0% |
| 3lssA01 | 1.10.287.40 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Serine-tRNA synthetase, tRNA binding domain | 0.51 | 38.0 | 4.03e-01 | 77.9% | 88.4% |
| 5k3hB04 | 1.20.140.10 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 | 0.50 | 42.0 | 4.12e-01 | 90.2% | 93.2% |
| 1gqeA01 | 1.20.58.410 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Release factor | 0.50 | 35.0 | 3.62e-01 | 71.3% | 89.4% |
ECOD (37)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4025710 | 3871.1.1.0 ↗ | alpha duplicates or obligate multimers › PHIST › PHIST › PHIST | 0.66 | 47.0 | 4.66e-01 | 72.1% | 82.4% |
| 3400593 | 4323.1.1.1 ↗ | alpha bundles › helical bundle domain in vacuolar ATP synthase subunit C › helical bundle domain in vacuolar ATP synthase subunit C › helical bundle domain in vacuolar ATP synthase subunit C › V_ATPase_I | 0.66 | 51.0 | 4.52e-01 | 82.0% | 74.9% |
| 3744877 | 4323.1.1.2 ↗ | alpha bundles › helical bundle domain in vacuolar ATP synthase subunit C › helical bundle domain in vacuolar ATP synthase subunit C › helical bundle domain in vacuolar ATP synthase subunit C › V-ATPase_C | 0.66 | 51.0 | 4.62e-01 | 82.0% | 80.6% |
| 3970681 | 192.29.1.0 ↗ | alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) | 0.66 | 47.0 | 3.77e-01 | 73.0% | 67.6% |
| 3575539 | 4323.1.1.1 ↗ | alpha bundles › helical bundle domain in vacuolar ATP synthase subunit C › helical bundle domain in vacuolar ATP synthase subunit C › helical bundle domain in vacuolar ATP synthase subunit C › V_ATPase_I | 0.66 | 51.0 | 4.97e-01 | 82.0% | 80.0% |
| 3715476 | 4323.1.1.1 ↗ | alpha bundles › helical bundle domain in vacuolar ATP synthase subunit C › helical bundle domain in vacuolar ATP synthase subunit C › helical bundle domain in vacuolar ATP synthase subunit C › V_ATPase_I | 0.64 | 50.0 | 4.64e-01 | 82.0% | 77.3% |
| 3649076 | 3939.1.1.207 ↗ | alpha duplicates or obligate multimers › XRCC4 C-terminal oligomerization domain › XRCC4 C-terminal oligomerization domain › XRCC4 C-terminal oligomerization domain › NET2A | 0.63 | 49.0 | 4.27e-01 | 82.8% | 90.0% |
| 3236134 | 4323.1.1.1 ↗ | alpha bundles › helical bundle domain in vacuolar ATP synthase subunit C › helical bundle domain in vacuolar ATP synthase subunit C › helical bundle domain in vacuolar ATP synthase subunit C › V_ATPase_I | 0.63 | 49.0 | 4.32e-01 | 82.0% | 73.7% |
| 4188455 | 601.19.1.19 ↗ | alpha bundles › Four-helical up-and-down bundle › Apolipoprotein › Apolipoprotein › ATP-synt_A | 0.62 | 45.0 | 3.66e-01 | 74.6% | 45.7% |
| 3721752 | 5086.1.1.170 ↗ | alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › Not3 | 0.62 | 51.0 | 5.09e-01 | 90.2% | 85.6% |
| 3499141 | 3343.1.1.2 ↗ | alpha complex topology › gamma-tubulin complex protein 4 (GCP4) › gamma-tubulin complex protein 4 (GCP4) › gamma-tubulin complex protein 4 (GCP4) › GCP_C_terminal,GCP_N_terminal | 0.61 | 55.0 | 3.48e-01 | 99.2% | 40.8% |
| 3587218 | 633.23.1.0 ↗ | alpha bundles › Bromodomain-like › Claudin › Claudin | 0.60 | 39.0 | 3.89e-01 | 79.5% | 62.3% |
| None | — | 0.60 | 48.0 | 3.23e-01 | 87.7% | 43.1% | |
| 3509261 | 601.15.1.2 ↗ | alpha bundles › Four-helical up-and-down bundle › Proteasome activator reg(alpha) › Proteasome activator reg(alpha) › PA28_C | 0.59 | 43.0 | 3.59e-01 | 76.2% | 77.7% |
| 5082506 | 5050.1.1.9 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_1 | 0.58 | 46.0 | 3.96e-01 | 86.9% | 91.2% |
| 3722159 | 5001.1.1.10 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Ceramidase | 0.57 | 44.0 | 3.26e-01 | 80.3% | 45.7% |
| 3741278 | 4177.1.1.0 ↗ | alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like | 0.57 | 41.0 | 3.39e-01 | 73.0% | 74.8% |
| 5059270 | 4323.1.1.0 ↗ | alpha bundles › helical bundle domain in vacuolar ATP synthase subunit C › helical bundle domain in vacuolar ATP synthase subunit C › helical bundle domain in vacuolar ATP synthase subunit C | 0.57 | 44.0 | 4.42e-01 | 82.0% | 84.0% |
| 3800481 | 174.1.1.0 ↗ | few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain | 0.57 | 42.0 | 3.93e-01 | 76.2% | 69.3% |
| 4575614 | 5045.1.1.1 ↗ | alpha bundles › F1F0 ATP synthase subunit A › F1F0 ATP synthase subunit A › F1F0 ATP synthase subunit A › ATP-synt_A | 0.57 | 41.0 | 3.25e-01 | 75.4% | 46.9% |
| 3602632 | 7064.1.1.1 ↗ | alpha bundles › Transmembrane domain of VIT1 › Transmembrane domain of VIT1 › Transmembrane domain of VIT1 › VIT1 | 0.56 | 40.0 | 3.51e-01 | 74.6% | 71.9% |
| 4216571 | 601.54.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › low CO2-inducible protein LCI1 › low CO2-inducible protein LCI1 | 0.55 | 41.0 | 4.14e-01 | 81.1% | 76.8% |
| 3410814 | 174.1.1.0 ↗ | few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain | 0.55 | 43.0 | 4.27e-01 | 87.7% | 78.4% |
| 5055770 | 604.12.1.0 ↗ | alpha bundles › Spectrin repeat-like › MIT domain › MIT domain | 0.55 | 42.0 | 4.30e-01 | 86.9% | 81.7% |
| 4961158 | 5076.2.1.3 ↗ | alpha complex topology › Mitochondrial ADP/ATP carrier-like › Putative sulfate permease CysZ › Putative sulfate permease CysZ › DUF4013 | 0.55 | 45.0 | 3.70e-01 | 87.7% | 57.3% |
| 3172387 | 192.7.1.0 ↗ | alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm | 0.55 | 39.0 | 4.03e-01 | 82.8% | 77.4% |
| 3614062 | 601.1.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin | 0.54 | 42.0 | 3.67e-01 | 82.0% | 92.4% |
| 3177741 | 4006.1.1.1 ↗ | alpha bundles › Release factor (Pfam 00472) N-terminal alpha helical domain › Release factor (Pfam 00472) N-terminal alpha helical domain › Release factor (Pfam 00472) N-terminal alpha helical domain › PCRF | 0.53 | 38.0 | 4.20e-01 | 77.0% | 90.0% |
| 3789449 | 4006.1.1.0 ↗ | alpha bundles › Release factor (Pfam 00472) N-terminal alpha helical domain › Release factor (Pfam 00472) N-terminal alpha helical domain › Release factor (Pfam 00472) N-terminal alpha helical domain | 0.53 | 36.0 | 4.07e-01 | 77.0% | 90.5% |
| 3771372 | 3860.1.1.0 ↗ | alpha bundles › Myosin VI lever arm › Myosin VI lever arm › Myosin VI lever arm | 0.52 | 45.0 | 3.89e-01 | 95.1% | 84.6% |
| 3819233 | 4006.1.1.1 ↗ | alpha bundles › Release factor (Pfam 00472) N-terminal alpha helical domain › Release factor (Pfam 00472) N-terminal alpha helical domain › Release factor (Pfam 00472) N-terminal alpha helical domain › PCRF | 0.52 | 37.0 | 3.83e-01 | 73.8% | 84.3% |
| 3967307 | 601.33.1.1 ↗ | alpha bundles › Four-helical up-and-down bundle › CHAD domain › CHAD domain › CHAD | 0.51 | 40.0 | 3.92e-01 | 82.0% | 81.5% |
| 1518904 | 601.40.1.1 ↗ | alpha bundles › Four-helical up-and-down bundle › N-terminal domain in uncharacterized DUF3829-like protein › N-terminal domain in uncharacterized DUF3829-like protein › DUF6845 | 0.51 | 40.0 | 3.71e-01 | 82.0% | 83.0% |
| 4206524 | 605.2.1.3 ↗ | alpha duplicates or obligate multimers › ROP-like › Hypothetical protein D-63 › Hypothetical protein D-63 › Seryl_tRNA_N | 0.51 | 37.0 | 3.87e-01 | 82.8% | 81.8% |
| 4079591 | 192.7.1.2 ↗ | alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm › Seryl_tRNA_N | 0.51 | 36.0 | 3.85e-01 | 82.8% | 81.8% |
| 4972150 | 5060.1.1.1 ↗ | alpha bundles › V-type ATP synthase subunit C › V-type ATP synthase subunit C › V-type ATP synthase subunit C › vATP-synt_AC39 | 0.50 | 32.0 | 3.30e-01 | 82.0% | 66.7% |
| 4155141 | 1079.1.1.14 ↗ | alpha complex topology › Transmembrane reductase CcdA › Transmembrane reductase CcdA › Transmembrane reductase CcdA › MarC | 0.50 | 36.0 | 3.12e-01 | 73.8% | 76.4% |
D2
medium
residues 8-17_29-119