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MG592456.1__AUR85801.1__NVP1081O_066__00066

Bact-Vir

MG592456.1__AUR85801.1__NVP1081O_066__00066

Identity

Accession:
MG592456 ↗
Kingdom:
phage

Quality

89.0 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-108
PDB
Domain cluster: representative
CATH (42)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2f4lA03 3.10.28.20 Alpha Beta › Roll › Endonuclease I-creI › Acetamidase/Formamidase-like domains 0.76 54.0 6.08e-01 98.1% 97.5%
2joqA01 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.67 37.0 4.30e-01 80.2% 74.7%
1vr4E00 3.30.110.70 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › Hypothetical protein apc22750. Chain B 0.63 43.0 4.56e-01 75.5% 79.6%
3eeeA00 3.90.1520.10 Alpha Beta › Alpha-Beta Complex › H-NOX domain › H-NOX domain 0.63 41.0 3.43e-01 96.2% 37.2%
6wubf01 3.30.70.60 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S6/Translation elongation factor EF1B 0.62 41.0 4.37e-01 81.1% 75.5%
4kzsA01 3.10.28.20 Alpha Beta › Roll › Endonuclease I-creI › Acetamidase/Formamidase-like domains 0.62 42.0 4.83e-01 70.8% 100.0%
3bqwA01 3.15.30.10 Alpha Beta › Super Roll › putative capsid protein of prophage fold › putative capsid protein of prophage domain like 0.60 44.0 3.58e-01 78.3% 81.4%
4noiA01 3.30.1360.10 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › RNA polymerase, RBP11-like subunit 0.59 43.0 4.40e-01 100.0% 78.6%
3pcoB06 3.30.70.380 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ferrodoxin-fold anticodon-binding domain 0.59 38.0 4.01e-01 80.2% 73.4%
3w1eA01 3.30.1660.40 Alpha Beta › 2-Layer Sandwich › Dodecin subunit-like › FlgT, N-terminal domain 0.59 43.0 4.62e-01 77.4% 98.9%
7dl8C01 3.30.110.20 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › Alba-like domain 0.58 36.0 3.89e-01 80.2% 73.0%
1dfaA03 3.10.28.10 Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases 0.58 38.0 4.04e-01 94.3% 74.7%
3d85D02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.57 40.0 4.01e-01 98.1% 71.7%
2yqzA01 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.57 48.0 3.95e-01 91.5% 93.3%
3tupA02 3.30.70.380 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ferrodoxin-fold anticodon-binding domain 0.57 37.0 3.92e-01 81.1% 72.9%
5xyiY00 3.30.70.3370 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.57 39.0 3.92e-01 93.4% 70.5%
3uebF00 3.30.300.100 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › MTH677-like 0.56 39.0 4.03e-01 80.2% 77.0%
1khmA00 3.30.1370.10 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › K Homology domain, type 1 0.56 31.0 3.39e-01 73.6% 65.2%
3kp0A03 3.30.30.60 Alpha Beta › 2-Layer Sandwich › Defensin A-like › D-lysine 5,6-aminomutase beta subunit KamE, N-terminal domain 0.56 34.0 3.95e-01 79.2% 94.0%
1v8cA02 3.30.1370.80 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › Molybdopterin cofactor biosynthesis MoaD-related, C-terminal domain 0.55 36.0 4.05e-01 81.1% 87.5%
3a27A00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.55 46.0 3.61e-01 89.6% 76.3%
2y3uA02 3.30.980.50 Alpha Beta › 2-Layer Sandwich › Threonyl-tRNA Synthetase; Chain A, domain 2 › 0.55 44.0 4.33e-01 98.1% 81.4%
2fbjH02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 35.0 4.01e-01 93.4% 93.2%
2e7vA01 3.30.70.960 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › SEA domain 0.55 41.0 4.13e-01 81.1% 79.0%
5xoyB02 3.30.70.360 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.55 40.0 4.07e-01 81.1% 77.6%
2xzmP00 3.30.70.3370 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.54 37.0 3.41e-01 93.4% 50.7%
3f62A00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 47.0 4.74e-01 100.0% 95.4%
1tz0B00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.54 35.0 3.61e-01 82.1% 70.1%
3ibwA00 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.54 29.0 3.22e-01 71.7% 65.8%
1j27A00 3.30.70.1120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › TT1725-like 0.54 34.0 3.52e-01 81.1% 67.3%
1qdlA00 3.60.120.10 Alpha Beta › 4-Layer Sandwich › Anthranilate synthase › Anthranilate synthase 0.53 48.0 3.21e-01 100.0% 28.9%
3e23A00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.52 44.0 3.65e-01 94.3% 91.4%
1j6wA00 3.30.1360.80 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › S-ribosylhomocysteinase (LuxS) 0.52 37.0 3.26e-01 89.6% 49.1%
4q7aC02 3.30.70.360 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.52 39.0 3.91e-01 81.1% 77.8%
2c42A03 3.40.920.10 Alpha Beta › 3-Layer(aba) Sandwich › Pyruvate-ferredoxin Oxidoreductase; domain 3 › Pyruvate-ferredoxin oxidoreductase, PFOR, domain III 0.52 37.0 3.01e-01 75.5% 93.4%
3c6kB03 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.51 42.0 3.53e-01 90.6% 98.9%
2qswA00 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.51 33.0 3.54e-01 85.8% 76.7%
1i9zA00 3.60.10.10 Alpha Beta › 4-Layer Sandwich › Deoxyribonuclease I; Chain A › Endonuclease/exonuclease/phosphatase 0.51 43.0 3.10e-01 95.3% 81.2%
1yawB01 3.30.1330.10 Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › PurM-like, N-terminal domain 0.50 43.0 4.02e-01 94.3% 95.5%
2w2sA00 3.10.460.20 Alpha Beta › Roll › VSV matrix protein › Rhabdovirus matrix protein M2 0.50 45.0 3.93e-01 100.0% 79.1%
4jb9H01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.50 44.0 4.17e-01 99.1% 96.9%
5is2A01 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.50 36.0 3.83e-01 80.2% 86.8%
ECOD (73)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4569098 304.18.1.0 a+b two layers › Alpha-beta plaits › Anticodon-binding domain of PheRS › Anticodon-binding domain of PheRS 0.68 37.0 4.49e-01 72.6% 82.4%
3992387 872.3.1.0 a+b two layers › Dodecin subunit-like › YbjQ-like › YbjQ-like 0.67 45.0 5.25e-01 75.5% 97.3%
3709183 872.3.1.7 a+b two layers › Dodecin subunit-like › YbjQ-like › YbjQ-like › YbjQ_4 0.66 47.0 4.67e-01 75.5% 70.9%
3627282 872.3.1.0 a+b two layers › Dodecin subunit-like › YbjQ-like › YbjQ-like 0.63 44.0 4.53e-01 76.4% 76.0%
3602520 304.126.1.0 a+b two layers › Alpha-beta plaits › ferredoxin-like domain in vacuolar ATP synthase subunit C › ferredoxin-like domain in vacuolar ATP synthase subunit C 0.63 35.0 3.99e-01 76.4% 74.7%
4001525 273.1.1.1 a+b three layers › PR-1-like › PR-1-like › PR-1-like › CAP 0.62 48.0 3.40e-01 95.3% 25.1%
5059640 11.1.5.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f 0.62 37.0 3.43e-01 78.3% 47.7%
3992388 872.3.1.5 a+b two layers › Dodecin subunit-like › YbjQ-like › YbjQ-like › YbjQ_2 0.62 43.0 4.09e-01 76.4% 60.8%
4027296 872.3.1.5 a+b two layers › Dodecin subunit-like › YbjQ-like › YbjQ-like › YbjQ_2 0.62 43.0 4.35e-01 76.4% 71.4%
7178 873.1.1.5 a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain › HNOB 0.62 41.0 3.42e-01 96.2% 37.8%
3498135 872.3.1.5 a+b two layers › Dodecin subunit-like › YbjQ-like › YbjQ-like › YbjQ_2 0.62 43.0 4.34e-01 75.5% 72.4%
5029745 304.133.1.1 a+b two layers › Alpha-beta plaits › 26 kDa periplasmic immunogenic protein › 26 kDa periplasmic immunogenic protein › SIMPL 0.62 43.0 4.84e-01 72.6% 96.2%
3873184 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.61 39.0 4.41e-01 92.5% 85.0%
4985331 256.1.1.1 a+b two layers › MTH1598-like › MTH1598-like › MTH1598-like › Archease 0.61 38.0 4.33e-01 75.5% 86.7%
3226473 872.1.1.9 a+b two layers › Dodecin subunit-like › Flavin-binding protein dodecin-like › Flavin-binding protein dodecin-like › PF29479 0.61 40.0 4.25e-01 75.5% 75.8%
3964190 310.3.1.3 a+b two layers › RRF/tRNA synthetase additional domain-like › General secretion pathway protein M (EpsM) periplasmic domain-related › General secretion pathway protein M (EpsM) periplasmic domain-related › PilN 0.60 38.0 3.34e-01 96.2% 40.6%
4054495 11.1.1.96 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › C1-set 0.60 38.0 3.96e-01 92.5% 68.0%
3706258 872.3.1.5 a+b two layers › Dodecin subunit-like › YbjQ-like › YbjQ-like › YbjQ_2 0.59 45.0 4.23e-01 80.2% 66.4%
3906458 872.3.1.5 a+b two layers › Dodecin subunit-like › YbjQ-like › YbjQ-like › YbjQ_2 0.59 45.0 4.05e-01 81.1% 79.3%
3703269 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.59 39.0 3.88e-01 81.1% 63.5%
3233779 873.1.1.5 a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain › HNOB 0.59 41.0 3.41e-01 100.0% 39.5%
3222858 873.1.1.5 a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain › HNOB 0.58 40.0 3.37e-01 100.0% 39.5%
3796322 304.109.1.0 a+b two layers › Alpha-beta plaits › Ribosomal proteins S24e, L23 and L15e › Ribosomal proteins S24e, L23 and L15e 0.57 43.0 4.26e-01 81.1% 76.5%
3930325 273.1.1.0 a+b three layers › PR-1-like › PR-1-like › PR-1-like 0.57 43.0 3.93e-01 85.8% 59.4%
3369744 304.8.1.0 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.57 40.0 3.97e-01 100.0% 68.7%
3482574 872.3.1.0 a+b two layers › Dodecin subunit-like › YbjQ-like › YbjQ-like 0.57 43.0 4.23e-01 81.1% 73.7%
3927786 273.1.1.0 a+b three layers › PR-1-like › PR-1-like › PR-1-like 0.57 44.0 3.94e-01 85.8% 59.7%
3270302 304.6.1.1 a+b two layers › Alpha-beta plaits › FAD-linked oxidases, C-terminal domain › FAD-linked oxidases, C-terminal domain › FAD-oxidase_C 0.57 43.0 3.18e-01 86.8% 30.4%
3609924 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.56 42.0 3.92e-01 82.1% 63.8%
3229998 273.1.1.1 a+b three layers › PR-1-like › PR-1-like › PR-1-like › CAP 0.56 47.0 3.96e-01 94.3% 53.9%
3939102 273.1.1.1 a+b three layers › PR-1-like › PR-1-like › PR-1-like › CAP 0.56 45.0 3.80e-01 96.2% 50.5%
3367409 304.102.1.3 a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › PseudoU_synth_1 0.56 40.0 2.81e-01 80.2% 22.5%
4978302 242.1.1.0 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases 0.56 45.0 3.98e-01 91.5% 60.7%
4061575 304.8.1.5 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › NIL 0.56 38.0 4.02e-01 92.5% 81.1%
3484278 873.1.1.0 a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain 0.56 43.0 3.53e-01 100.0% 44.6%
3930992 273.1.1.1 a+b three layers › PR-1-like › PR-1-like › PR-1-like › CAP 0.55 45.0 3.91e-01 92.5% 57.0%
3605908 304.31.1.3 a+b two layers › Alpha-beta plaits › HMG-CoA reductase › NAD-binding domain of HMG-CoA reductase › FAZ1_cons 0.55 40.0 3.92e-01 81.1% 68.3%
5065186 242.1.1.0 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases 0.55 46.0 4.23e-01 91.5% 73.4%
3473979 873.1.1.5 a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain › HNOB 0.55 43.0 3.57e-01 98.1% 46.2%
3679255 304.55.1.15 a+b two layers › Alpha-beta plaits › Origin of replication-binding domains › Origin of replication-binding domains › Helitron_like_N 0.55 42.0 3.98e-01 82.1% 73.1%
1667689 304.25.1.0 a+b two layers › Alpha-beta plaits › Bacterial exopeptidase dimerisation domain › Bacterial exopeptidase dimerisation domain 0.55 41.0 4.13e-01 81.1% 78.5%
3492823 873.1.1.5 a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain › HNOB 0.54 43.0 3.56e-01 98.1% 47.4%
3682007 304.8.1.64 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › Helitron_like_N, REP_ORF2-G2P 0.54 43.0 3.48e-01 84.0% 49.7%
3651182 304.55.1.15 a+b two layers › Alpha-beta plaits › Origin of replication-binding domains › Origin of replication-binding domains › Helitron_like_N 0.54 43.0 3.55e-01 84.9% 55.0%
3398052 273.1.1.1 a+b three layers › PR-1-like › PR-1-like › PR-1-like › CAP 0.54 44.0 3.95e-01 96.2% 61.7%
4611510 304.8.1.5 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › NIL 0.54 33.0 3.50e-01 84.9% 67.4%
3938738 273.1.1.1 a+b three layers › PR-1-like › PR-1-like › PR-1-like › CAP 0.54 43.0 3.74e-01 96.2% 54.7%
3226112 304.47.1.0 a+b two layers › Alpha-beta plaits › SEA domain › SEA domain 0.54 41.0 3.86e-01 82.1% 79.2%
3476029 873.1.1.5 a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain › HNOB 0.53 40.0 3.37e-01 98.1% 45.9%
3936812 873.1.1.5 a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain › HNOB 0.53 40.0 3.37e-01 90.6% 45.9%
3405770 273.1.1.1 a+b three layers › PR-1-like › PR-1-like › PR-1-like › CAP 0.53 43.0 3.85e-01 95.3% 61.4%
5028560 304.39.1.0 a+b two layers › Alpha-beta plaits › Mechanosensitive channel protein MscS (YggB), C-terminal domain › Mechanosensitive channel protein MscS (YggB), C-terminal domain 0.53 37.0 3.68e-01 81.1% 69.1%
3252158 2003.1.5.0 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases 0.53 47.0 3.69e-01 100.0% 93.6%
3241169 304.47.1.1 a+b two layers › Alpha-beta plaits › SEA domain › SEA domain › SEA 0.53 39.0 3.81e-01 81.1% 71.3%
3940716 206.1.1.44 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › DUF1679 0.52 45.0 3.13e-01 95.3% 35.3%
3883294 304.47.1.1 a+b two layers › Alpha-beta plaits › SEA domain › SEA domain › SEA 0.52 39.0 3.63e-01 77.4% 63.8%
3387512 306.7.1.1 a+b two layers › Glucose permease domain IIB-like › Trigger factor ribosome-binding domain › Trigger factor ribosome-binding domain › Trigger_N 0.52 44.0 4.21e-01 90.6% 95.8%
3699932 2003.1.5.51 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › TPMT 0.52 44.0 3.40e-01 94.3% 93.3%
3499425 304.18.1.1 a+b two layers › Alpha-beta plaits › Anticodon-binding domain of PheRS › Anticodon-binding domain of PheRS › FDX-ACB 0.52 39.0 3.91e-01 81.1% 78.0%
3385559 880.1.1.1 a+b duplicates or obligate multimers › ADC synthase › ADC synthase › ADC synthase › Chorismate_bind 0.52 42.0 2.98e-01 90.6% 54.4%
3322115 230.2.1.1 a+b two layers › T-fold › Ribosomal protein S3-C › Ribosomal protein S3-C › Ribosomal_S3_C 0.51 38.0 3.75e-01 94.3% 72.2%
4289692 306.7.1.1 a+b two layers › Glucose permease domain IIB-like › Trigger factor ribosome-binding domain › Trigger factor ribosome-binding domain › Trigger_N 0.51 43.0 4.14e-01 90.6% 95.8%
4074612 304.8.1.5 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › NIL 0.51 35.0 3.67e-01 91.5% 78.9%
5022355 242.1.1.0 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases 0.51 42.0 3.91e-01 91.5% 69.3%
5073903 304.25.1.1 a+b two layers › Alpha-beta plaits › Bacterial exopeptidase dimerisation domain › Bacterial exopeptidase dimerisation domain › M20_dimer 0.51 39.0 3.58e-01 81.1% 82.1%
3485859 304.47.1.1 a+b two layers › Alpha-beta plaits › SEA domain › SEA domain › SEA 0.51 38.0 3.60e-01 79.2% 68.5%
3713805 2003.1.5.0 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases 0.51 45.0 3.29e-01 100.0% 83.3%
3473931 11.1.1.108 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › C2-set_2 0.51 45.0 4.44e-01 99.1% 94.8%
4121613 848.1.1.1 a+b complex topology › Hsp33 domain › Hsp33 domain › Hsp33 domain › HSP33 0.51 44.0 3.42e-01 97.2% 97.1%
3621161 304.47.1.0 a+b two layers › Alpha-beta plaits › SEA domain › SEA domain 0.51 37.0 3.60e-01 81.1% 67.5%
4611583 306.7.1.1 a+b two layers › Glucose permease domain IIB-like › Trigger factor ribosome-binding domain › Trigger factor ribosome-binding domain › Trigger_N 0.51 43.0 4.13e-01 93.4% 93.3%
3993060 304.47.1.1 a+b two layers › Alpha-beta plaits › SEA domain › SEA domain › SEA 0.51 37.0 3.61e-01 78.3% 68.3%
4105300 304.8.1.5 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › NIL 0.50 34.0 3.61e-01 85.8% 77.9%