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MG592456.1__AUR85855.1__NVP1081O_120__00120

Bact-Vir

MG592456.1__AUR85855.1__NVP1081O_120__00120

Identity

Accession:
MG592456 ↗
Kingdom:
phage

Quality

93.2 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pantevenvirales› Straboviridae› Schizotequatrovirus› Vibrio_phage_1.081.O._10N.286.52.C2

TaxID: 2070722

Cluster

View cluster (6 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-71
PDB
Domain cluster: rep: DGJ7_scaffold_2_2069_prodigal-single.1__X__X__00027__D3-82
CATH (15)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2eqjA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.62 38.0 3.92e-01 100.0% 65.2%
3h8zA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.59 36.0 4.14e-01 100.0% 89.6%
3pfsB00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.57 40.0 3.31e-01 74.3% 100.0%
3m4rA01 3.40.225.10 Alpha Beta › 3-Layer(aba) Sandwich › L-fuculose-1-phosphate Aldolase › Class II aldolase/adducin N-terminal domain 0.56 41.0 2.96e-01 77.1% 77.6%
1hezE00 3.10.20.10 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.56 30.0 3.19e-01 77.1% 55.7%
2k49A00 2.30.29.80 Mainly Beta › Roll › PH-domain like › 0.55 44.0 3.80e-01 92.9% 96.6%
2bmoA01 3.90.380.10 Alpha Beta › Alpha-Beta Complex › Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 › Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 0.54 36.0 2.41e-01 70.0% 75.3%
3jcuB02 3.10.680.10 Alpha Beta › Roll › Photosystem II CP47 reaction center protein › Photosystem II CP47 reaction center protein 0.52 38.0 2.92e-01 81.4% 43.9%
3dboB00 3.40.50.1010 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 5'-nuclease 0.51 45.0 3.76e-01 100.0% 75.4%
1b7eA01 3.90.350.10 Alpha Beta › Alpha-Beta Complex › Transposase Inhibitor Protein From Tn5; Chain A, domain 1 › Transposase Inhibitor Protein From Tn5; Chain A, domain 1 0.51 41.0 2.95e-01 94.3% 88.2%
3na2A00 3.40.1570.20 Alpha Beta › 3-Layer(aba) Sandwich › Heme iron utilization protein-like fold › 0.51 37.0 3.07e-01 80.0% 47.8%
4ckmB00 2.170.210.20 Mainly Beta › Beta Complex › Dna Repair Protein Xrcc4; Chain: A, domain 1 › Spindle assembly abnormal protein 6, N-terminal domain 0.51 43.0 3.50e-01 100.0% 79.2%
1cboA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.51 38.0 2.54e-01 85.7% 17.8%
1j8bA00 3.30.1310.10 Alpha Beta › 2-Layer Sandwich › Ybab; Chain: A; › Nucleoid-associated protein YbaB-like domain 0.50 32.0 3.03e-01 87.1% 50.0%
2je6A01 3.30.230.70 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › GHMP Kinase, N-terminal domain 0.50 41.0 2.82e-01 91.4% 91.6%
ECOD (17)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3316143 4987.1.1.0 ↗ few secondary structure elements › Ribosomal protein L31p › Ribosomal protein L31p › Ribosomal protein L31p 0.62 32.0 3.46e-01 91.4% 56.7%
4031327 206.1.3.102 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › PF30763 0.57 41.0 2.89e-01 75.7% 43.3%
3452696 5.1.3.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.57 45.0 2.94e-01 85.7% 97.5%
3672960 1.1.11.5 ↗ beta barrels › cradle loop barrel › RIFT-related › Type II restriction endonuclease effector domain › At2g31720-like 0.55 46.0 3.60e-01 92.9% 61.3%
3955898 2484.1.1.8 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › ROK 0.55 33.0 2.95e-01 78.6% 40.0%
5043959 65.1.1.0 ↗ beta sandwiches › Composite domain of metallo-dependent hydrolases › Composite domain of metallo-dependent hydrolases › Composite domain of metallo-dependent hydrolases 0.54 42.0 3.66e-01 100.0% 54.1%
3803611 206.1.1.1 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.54 42.0 2.70e-01 84.3% 47.6%
5004589 5.1.2.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed 0.53 36.0 3.12e-01 70.0% 64.5%
4999001 206.1.3.19 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › Dala_Dala_lig_C 0.52 45.0 3.04e-01 98.6% 51.1%
3954445 2006.1.4.2 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › PIN 0.52 46.0 4.03e-01 100.0% 94.3%
3462303 1.1.11.1 ↗ beta barrels › cradle loop barrel › RIFT-related › Type II restriction endonuclease effector domain › B3 0.52 36.0 2.61e-01 84.3% 25.4%
3601544 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.52 36.0 2.23e-01 77.1% 45.9%
4983464 11.9.1.5 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › FAH › FAH › DUF2848 0.51 42.0 3.12e-01 100.0% 48.9%
3451500 1.1.11.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Type II restriction endonuclease effector domain 0.50 43.0 3.26e-01 92.9% 61.9%
3813512 1.1.11.1 ↗ beta barrels › cradle loop barrel › RIFT-related › Type II restriction endonuclease effector domain › B3 0.50 35.0 3.08e-01 74.3% 98.2%
3513469 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.50 35.0 2.82e-01 74.3% 87.6%
5033105 244.4.1.4 ↗ a+b two layers › FAD-linked reductases, C-terminal domain-like › Ni-Fe binding domain in nickel-iron hydrogenase large subunit › Ni-Fe binding domain in nickel-iron hydrogenase large subunit › PF27537 0.50 33.0 3.22e-01 100.0% 61.3%